Wall clock time and date at job start Fri Apr 10 2020 17:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47268 * 275.81919 * 3 2 1 5 5 C 1.36842 * 120.00376 * 136.31470 * 4 3 2 6 6 H 1.08000 * 120.00473 * 227.74838 * 5 4 3 7 7 C 1.39061 * 119.99797 * 48.02806 * 5 4 3 8 8 N 1.31356 * 120.00156 * 358.46748 * 7 5 4 9 9 Si 1.86795 * 120.00201 * 178.46537 * 7 5 4 10 10 H 1.48499 * 109.47143 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47108 * 119.99885 * 9 7 5 12 12 H 1.48498 * 109.47572 * 240.00019 * 9 7 5 13 13 C 1.34777 * 119.99544 * 316.31886 * 4 3 2 14 14 O 1.21616 * 119.99949 * 174.09182 * 13 4 3 15 15 C 1.47591 * 120.00396 * 354.08571 * 13 4 3 16 16 C 1.40247 * 120.47070 * 167.44084 * 15 13 4 17 17 C 1.38040 * 118.37172 * 179.75886 * 16 15 13 18 18 C 1.39484 * 119.22640 * 0.48776 * 17 16 15 19 19 C 1.48311 * 119.56154 * 179.74853 * 18 17 16 20 20 N 1.34105 * 126.68099 * 0.04322 * 19 18 17 21 21 N 1.28989 * 107.26348 * 180.02562 * 20 19 18 22 22 N 1.28729 * 108.95688 * 0.02562 * 21 20 19 23 23 H 0.97003 * 125.32802 * 179.97438 * 22 21 20 24 24 N 1.28872 * 109.33723 * 359.72696 * 22 21 20 25 25 N 1.32749 * 120.87925 * 359.77094 * 18 17 16 26 26 C 1.31508 * 121.77996 * 359.97428 * 25 18 17 27 27 H 4.40640 * 5.51333 * 179.97438 * 4 1 2 28 28 H 1.09004 * 109.47060 * 155.81647 * 3 2 1 29 29 H 1.08999 * 109.46977 * 35.81703 * 3 2 1 30 30 H 0.96996 * 120.00524 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.81393 * 359.97158 * 16 15 13 32 32 H 1.08005 * 120.38810 * 180.21853 * 17 16 15 33 33 H 1.07999 * 119.65922 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1392 1.3741 5 6 4.1708 -0.9894 1.6487 6 1 4.0964 -1.6831 2.4732 7 6 5.3224 -0.9563 0.8698 8 7 5.4033 -0.1299 -0.1480 9 14 6.7541 -2.0870 1.2709 10 1 6.4142 -2.9148 2.4560 11 1 7.0256 -2.9728 0.1103 12 1 7.9607 -1.2727 1.5650 13 6 2.5628 0.5696 2.3677 14 8 2.8942 0.3754 3.5217 15 6 1.5349 1.5817 2.0556 16 6 0.7491 2.1357 3.0767 17 6 -0.1960 3.0825 2.7366 18 6 -0.3443 3.4467 1.3983 19 6 -1.3613 4.4591 1.0239 20 7 -2.1970 5.1002 1.8540 21 7 -2.9174 5.8927 1.1352 22 7 -2.5682 5.7723 -0.0980 23 1 -2.9574 6.2591 -0.8413 24 7 -1.6172 4.9075 -0.1897 25 7 0.4124 2.8988 0.4552 26 6 1.3272 1.9973 0.7381 27 1 -1.0500 0.0002 0.0000 28 1 3.0089 0.9383 -0.4210 29 1 3.0097 -0.8325 -0.6014 30 1 6.2066 -0.1065 -0.6911 31 1 0.8826 1.8314 4.1043 32 1 -0.8165 3.5329 3.4973 33 1 1.9235 1.5735 -0.0564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602720395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:09 Heat of formation + Delta-G solvation = 225.802705 kcal Electronic energy + Delta-G solvation = -22983.547611 eV Core-core repulsion = 19437.217982 eV Total energy + Delta-G solvation = -3546.329629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.092 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.51183 -42.11573 -39.88996 -37.56631 -35.72601 -35.21274 -34.38672 -33.49185 -33.04190 -31.62355 -28.71136 -27.55665 -25.99669 -25.73136 -24.23825 -23.39736 -21.59658 -20.39366 -19.72976 -19.02235 -18.25958 -18.19757 -17.91468 -17.34536 -17.13769 -16.02647 -15.90937 -15.73788 -15.14538 -15.02410 -14.86997 -14.35667 -14.27886 -13.92641 -13.52819 -13.40337 -13.02857 -12.75924 -12.51278 -12.43447 -12.23850 -12.19730 -12.10952 -11.62004 -11.37137 -10.93736 -10.85905 -10.72059 -10.38764 -9.58920 -9.52682 -8.44404 -6.26180 -0.74538 0.10255 0.20059 0.98396 1.35322 1.42741 1.45259 1.56242 1.66339 1.83162 2.10051 2.28938 2.33921 2.83045 2.91222 2.97095 3.03392 3.43761 3.66067 3.80895 3.87049 3.97140 4.08000 4.21330 4.44658 4.55652 4.60090 4.89997 4.97343 4.97738 5.10586 5.41667 5.44808 5.59592 6.17870 6.40327 6.54571 6.69426 7.06112 7.07587 7.19881 7.86093 8.65170 Molecular weight = 298.09amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.003799 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.338595 B = 7367.985855 C = 7721.108198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.214 4.214 3 C 0.226 3.774 4 N -0.441 5.441 5 C -0.349 4.349 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.891 5.891 9 Si 0.990 3.010 10 H -0.272 1.272 11 H -0.263 1.263 12 H -0.276 1.276 13 C 0.502 3.498 14 O -0.608 6.608 15 C -0.177 4.177 16 C -0.024 4.024 17 C -0.134 4.134 18 C 0.202 3.798 19 C 0.212 3.788 20 N -0.273 5.273 21 N -0.049 5.049 22 N -0.198 5.198 23 H 0.496 0.504 24 N -0.267 5.267 25 N -0.471 5.471 26 C 0.123 3.877 27 H 0.243 0.757 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.280 0.720 31 H 0.153 0.847 32 H 0.174 0.826 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.919 8.824 -4.355 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.215 4.215 3 C 0.105 3.895 4 N -0.159 5.159 5 C -0.477 4.477 6 H 0.088 0.912 7 C -0.189 4.189 8 N -0.526 5.526 9 Si 0.813 3.187 10 H -0.196 1.196 11 H -0.188 1.188 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.494 6.494 15 C -0.184 4.184 16 C -0.050 4.050 17 C -0.156 4.156 18 C 0.062 3.938 19 C -0.069 4.069 20 N -0.147 5.147 21 N -0.044 5.044 22 N -0.050 5.050 23 H 0.356 0.644 24 N -0.121 5.121 25 N -0.182 5.182 26 C -0.033 4.033 27 H 0.259 0.741 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.170 0.830 32 H 0.191 0.809 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.180 9.459 -4.733 17.690 hybrid contribution 1.019 -0.861 0.405 1.393 sum -13.161 8.598 -4.329 16.306 Atomic orbital electron populations 1.25440 0.96238 1.00575 0.96835 1.23268 0.95299 0.99588 1.03394 1.18790 0.81710 1.03337 0.85704 1.43379 1.29978 1.37030 1.05529 1.19437 0.94024 1.16820 1.17376 0.91221 1.26314 0.99838 0.97786 0.95005 1.69812 1.30007 1.35980 1.16818 0.84935 0.77230 0.77870 0.78687 1.19647 1.18778 1.20180 1.18603 0.84218 0.82247 0.85725 1.90572 1.67197 1.70461 1.21207 1.21241 0.99694 1.01023 0.96396 1.21709 0.91004 0.92339 0.99967 1.21953 0.99498 0.97988 0.96186 1.18160 0.92350 0.93016 0.90265 1.23029 0.98685 0.99714 0.85476 1.76087 1.05814 1.06672 1.26123 1.78846 1.18755 1.16722 0.90099 1.47883 1.21376 1.26040 1.09655 0.64424 1.75162 1.06543 1.06497 1.23855 1.67628 1.05537 1.09162 1.35828 1.24692 0.93507 0.89074 0.96025 0.74091 0.88556 0.88434 0.90991 0.82967 0.80907 0.78267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.39 17.18 74.32 1.28 -4.11 16 2 C -0.21 -7.89 8.74 31.13 0.27 -7.61 16 3 C 0.23 9.65 4.20 84.57 0.36 10.01 16 4 N -0.44 -22.35 2.77 -679.32 -1.88 -24.23 16 5 C -0.35 -19.05 8.70 84.11 0.73 -18.32 16 6 H 0.07 4.02 7.81 -2.91 -0.02 4.00 16 7 C 0.02 0.76 5.29 84.96 0.45 1.21 16 8 N -0.89 -44.83 11.87 21.68 0.26 -44.58 16 9 Si 0.99 40.77 29.55 68.60 2.03 42.80 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 12 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 13 C 0.50 25.27 7.24 86.71 0.63 25.90 16 14 O -0.61 -34.52 16.44 -4.08 -0.07 -34.59 16 15 C -0.18 -7.19 5.00 -19.97 -0.10 -7.29 16 16 C -0.02 -0.81 9.70 22.71 0.22 -0.59 16 17 C -0.13 -3.83 9.72 22.52 0.22 -3.61 16 18 C 0.20 6.14 6.76 41.99 0.28 6.42 16 19 C 0.21 5.70 8.02 137.30 1.10 6.80 16 20 N -0.27 -6.81 12.20 -52.23 -0.64 -7.45 16 21 N -0.05 -0.98 13.47 37.02 0.50 -0.48 16 22 N -0.20 -3.02 7.90 37.02 0.29 -2.73 16 23 H 0.50 2.23 8.96 -347.52 -3.12 -0.89 16 24 N -0.27 -6.27 12.38 -52.18 -0.65 -6.91 16 25 N -0.47 -15.95 10.03 -183.73 -1.84 -17.79 16 26 C 0.12 4.58 6.39 85.10 0.54 5.12 16 27 H 0.24 5.66 7.80 -4.42 -0.03 5.62 16 28 H 0.10 4.08 6.21 -2.38 -0.01 4.07 16 29 H 0.10 4.31 7.50 -2.39 -0.02 4.29 16 30 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16 31 H 0.15 5.00 7.78 -2.91 -0.02 4.98 16 32 H 0.17 3.91 7.86 -2.91 -0.02 3.89 16 33 H 0.20 7.65 2.48 -23.81 -0.06 7.59 16 Total: -1.00 -68.77 299.60 2.02 -66.74 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -1.96 Total: 15.29 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 5.98 Total: 13.93 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -3.96 Total: -104.18 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.07 Total: -34.59 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -68.77 2.02 -66.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602720395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 292.545 kcal (2) G-P(sol) polarization free energy of solvation -68.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 223.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 225.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds