Wall clock time and date at job start Fri Apr 10 2020 17:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28441 * 125.20520 * 2 1 4 4 C 1.30898 * 110.96368 * 180.28279 * 3 2 1 5 5 C 1.39600 * 107.89430 * 359.71491 * 4 3 2 6 6 N 1.48019 * 127.32808 * 179.97438 * 5 4 3 7 7 O 1.31692 * 119.99678 * 0.03130 * 6 5 4 8 8 O 1.31698 * 120.00096 * 180.02562 * 6 5 4 9 9 C 1.36683 * 125.19947 * 179.79387 * 2 1 3 10 10 C 1.46948 * 126.89980 * 0.02562 * 9 2 1 11 11 O 1.21567 * 119.99958 * 264.69933 * 10 9 2 12 12 N 1.34773 * 120.00756 * 84.70281 * 10 9 2 13 13 C 1.33272 * 120.00666 * 174.56829 * 12 10 9 14 14 H 1.07999 * 119.99972 * 9.56914 * 13 12 10 15 15 C 1.46794 * 120.00065 * 189.29556 * 13 12 10 16 16 N 1.29313 * 119.99955 * 15.46766 * 15 13 12 17 17 Si 1.86797 * 119.99614 * 195.47444 * 15 13 12 18 18 H 1.48494 * 109.47618 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47168 * 120.00007 * 17 15 13 20 20 H 1.48511 * 109.46958 * 239.99372 * 17 15 13 21 21 C 1.46504 * 119.99451 * 354.56485 * 12 10 9 22 22 C 1.50699 * 109.47280 * 93.89175 * 21 12 10 23 23 O 1.20821 * 119.99881 * 5.33869 * 22 21 12 24 24 O 1.34228 * 119.99984 * 185.33294 * 22 21 12 25 25 H 1.09001 * 109.46714 * 275.09031 * 1 2 3 26 26 H 1.09003 * 109.47118 * 35.07942 * 1 2 3 27 27 H 1.08993 * 109.47268 * 155.08843 * 1 2 3 28 28 H 1.08001 * 126.05625 * 179.75232 * 4 3 2 29 29 H 0.97001 * 119.99999 * 179.97438 * 16 15 13 30 30 H 1.09002 * 109.47294 * 213.89560 * 21 12 10 31 31 H 1.09004 * 109.47351 * 333.89063 * 21 12 10 32 32 H 0.96704 * 116.99523 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0495 0.0000 4 6 3.4742 0.7275 -0.0060 5 6 3.5631 -0.6657 -0.0037 6 7 4.7949 -1.4864 -0.0091 7 8 5.9752 -0.9024 -0.0164 8 8 4.7106 -2.8007 -0.0065 9 6 2.2528 -1.1169 0.0040 10 6 1.8012 -2.5152 0.0085 11 8 1.7065 -3.1200 1.0588 12 7 1.4919 -3.1274 -1.1516 13 6 1.1869 -4.4247 -1.1601 14 1 1.0359 -4.9500 -0.2286 15 6 1.0503 -5.1383 -2.4356 16 7 1.5080 -4.6107 -3.5239 17 14 0.2152 -6.8084 -2.4865 18 1 -0.2165 -7.1881 -1.1174 19 1 -0.9698 -6.7423 -3.3792 20 1 1.1684 -7.8230 -3.0037 21 6 1.4909 -2.3665 -2.4036 22 6 2.8320 -2.5051 -3.0768 23 8 3.6661 -3.2470 -2.6146 24 8 3.0998 -1.8045 -4.1899 25 1 -0.3633 0.0912 1.0236 26 1 -0.3633 0.8410 -0.5906 27 1 -0.3633 -0.9320 -0.4328 28 1 4.3051 1.4174 -0.0112 29 1 1.4181 -5.0824 -4.3667 30 1 0.7122 -2.7515 -3.0622 31 1 1.2986 -1.3151 -2.1897 32 1 3.9738 -1.9262 -4.5856 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608158686.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:15 Heat of formation + Delta-G solvation = 18.606989 kcal Electronic energy + Delta-G solvation = -25808.131642 eV Core-core repulsion = 21777.382568 eV Total energy + Delta-G solvation = -4030.749075 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.084 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.93995 -39.58655 -38.28805 -37.98923 -35.49355 -34.66201 -33.76141 -33.56354 -32.46482 -31.20428 -28.12118 -27.91964 -26.05417 -25.12764 -22.31620 -21.51603 -21.24181 -19.70761 -18.14539 -17.49680 -17.33121 -17.07008 -16.84359 -16.43209 -15.84686 -15.58602 -15.06275 -14.99089 -14.59205 -14.43322 -14.10230 -13.34221 -13.04541 -12.99665 -12.90057 -12.18380 -12.08796 -11.85840 -11.30843 -11.22321 -10.68488 -10.66710 -10.54408 -10.46373 -10.38521 -9.94118 -9.82905 -9.54692 -9.51599 -9.35003 -8.99449 -8.56322 -6.98215 -4.02109 0.08798 1.45048 1.59232 2.29972 2.39187 2.82177 3.03088 3.10443 3.17134 3.40886 3.72058 3.95046 4.11557 4.22105 4.55655 4.69706 4.88813 4.94226 5.07196 5.24075 5.25133 5.43120 5.72563 6.16091 6.29681 6.34573 6.43334 6.88728 7.39404 7.40271 7.49512 7.65025 8.00940 8.64289 8.80428 8.98268 9.48322 10.05992 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.016800 B = 0.007267 C = 0.006681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.302879 B = 3851.983531 C = 4190.287642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.271 5.271 3 N -0.280 5.280 4 C 0.077 3.923 5 C -0.106 4.106 6 N 0.018 4.982 7 O -0.220 6.220 8 O -0.110 6.110 9 C 0.125 3.875 10 C 0.455 3.545 11 O -0.552 6.552 12 N -0.363 5.363 13 C -0.328 4.328 14 H 0.125 0.875 15 C 0.046 3.954 16 N -0.837 5.837 17 Si 0.945 3.055 18 H -0.258 1.258 19 H -0.275 1.275 20 H -0.276 1.276 21 C 0.134 3.866 22 C 0.481 3.519 23 O -0.476 6.476 24 O -0.538 6.538 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.207 0.793 29 H 0.286 0.714 30 H 0.140 0.860 31 H 0.063 0.937 32 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 8.953 -2.036 10.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.057 5.057 3 N -0.108 5.108 4 C -0.105 4.105 5 C -0.206 4.206 6 N 0.495 4.505 7 O -0.397 6.397 8 O -0.315 6.315 9 C -0.011 4.011 10 C 0.243 3.757 11 O -0.436 6.436 12 N -0.077 5.077 13 C -0.457 4.457 14 H 0.143 0.857 15 C -0.166 4.166 16 N -0.471 5.471 17 Si 0.770 3.230 18 H -0.182 1.182 19 H -0.201 1.201 20 H -0.201 1.201 21 C 0.008 3.992 22 C 0.320 3.680 23 O -0.359 6.359 24 O -0.350 6.350 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.224 0.776 29 H 0.099 0.901 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.810 9.822 -1.406 12.035 hybrid contribution 1.415 -1.563 -0.680 2.215 sum -5.396 8.259 -2.085 10.083 Atomic orbital electron populations 1.22440 0.71234 1.06321 1.05695 1.46111 1.08438 1.01713 1.49445 1.73369 1.02177 1.13506 1.21743 1.23521 0.94518 0.91551 1.00891 1.20491 0.83668 0.91449 1.24970 1.49161 1.01834 1.03068 0.96425 1.96200 1.09494 1.75023 1.59019 1.96451 1.95572 0.87338 1.52107 1.22467 0.89645 0.91705 0.97268 1.16214 0.90230 0.83090 0.86163 1.90697 1.58264 1.64484 1.30156 1.42476 1.52507 1.09831 1.02924 1.20833 1.45883 0.84789 0.94194 0.85737 1.26951 0.95379 1.00431 0.93888 1.68677 1.37336 1.40382 1.00748 0.85545 0.78519 0.79452 0.79512 1.18151 1.20086 1.20107 1.21041 0.95171 0.94617 0.88334 1.23327 0.89810 0.76812 0.78061 1.90736 1.47659 1.33900 1.63569 1.84477 1.41007 1.66710 1.42762 0.88525 0.87527 0.87602 0.77626 0.90087 0.84214 0.91905 0.74856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 11.08 59.84 0.66 1.55 16 2 N -0.27 -4.28 3.44 -63.89 -0.22 -4.50 16 3 N -0.28 -4.27 11.90 30.58 0.36 -3.91 16 4 C 0.08 1.24 11.85 -17.44 -0.21 1.03 16 5 C -0.11 -2.16 7.37 -79.31 -0.58 -2.75 16 6 N 0.02 0.43 4.98 34.27 0.17 0.60 16 7 O -0.22 -4.89 19.83 -31.56 -0.63 -5.51 16 8 O -0.11 -2.96 17.82 -35.51 -0.63 -3.59 16 9 C 0.13 2.54 4.94 -82.05 -0.41 2.14 16 10 C 0.45 10.83 5.58 -12.73 -0.07 10.76 16 11 O -0.55 -15.02 16.65 5.31 0.09 -14.94 16 12 N -0.36 -8.56 2.09 -115.93 -0.24 -8.80 16 13 C -0.33 -8.25 9.50 -13.47 -0.13 -8.38 16 14 H 0.13 3.32 7.26 -52.49 -0.38 2.94 16 15 C 0.05 1.07 5.29 -15.15 -0.08 0.99 16 16 N -0.84 -19.32 8.17 56.00 0.46 -18.87 16 17 Si 0.95 18.33 29.67 -169.99 -5.04 13.29 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 19 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 21 C 0.13 2.77 5.10 -5.19 -0.03 2.75 16 22 C 0.48 10.66 6.30 36.01 0.23 10.89 16 23 O -0.48 -12.42 15.51 -22.52 -0.35 -12.77 16 24 O -0.54 -9.85 13.42 -39.25 -0.53 -10.38 16 25 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.11 1.17 7.66 -51.93 -0.40 0.77 16 28 H 0.21 2.55 8.06 -52.49 -0.42 2.12 16 29 H 0.29 6.18 8.26 -40.82 -0.34 5.85 16 30 H 0.14 2.84 6.29 -51.93 -0.33 2.51 16 31 H 0.06 1.11 6.47 -51.93 -0.34 0.78 16 32 H 0.39 5.78 9.10 45.56 0.41 6.19 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -34.22 301.20 -4.06 -38.28 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -1.43 Total: 7.58 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: -0.61 Total: 18.98 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.53 Total: -35.47 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -2.05 Total: -47.19 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.04 Total: 13.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.22 -4.06 -38.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608158686.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.888 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds