Wall clock time and date at job start Fri Apr 10 2020 17:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86793 * 120.00384 * 2 1 4 4 H 1.48496 * 109.47276 * 240.00351 * 3 2 1 5 5 H 1.48510 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47046 * 119.99863 * 3 2 1 7 7 C 1.38953 * 119.99651 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99846 * 157.31375 * 7 2 1 9 9 N 1.37104 * 119.99933 * 337.30846 * 7 2 1 10 10 C 1.46493 * 120.00056 * 325.30315 * 9 7 2 11 11 C 1.53010 * 109.46873 * 269.99641 * 10 9 7 12 12 C 1.50697 * 109.47240 * 180.02562 * 11 10 9 13 13 O 1.20832 * 120.00059 * 0.02562 * 12 11 10 14 14 O 1.34223 * 119.99852 * 180.02562 * 12 11 10 15 15 C 1.34774 * 119.99618 * 145.29589 * 9 7 2 16 16 O 1.21300 * 119.99919 * 185.09418 * 15 9 7 17 17 C 1.50704 * 120.00243 * 5.09684 * 15 9 7 18 18 C 1.53000 * 109.47064 * 174.17757 * 17 15 9 19 19 H 1.08994 * 110.66547 * 52.06699 * 18 17 15 20 20 C 1.54232 * 110.60499 * 175.00033 * 18 17 15 21 21 C 1.51319 * 103.55365 * 118.51508 * 20 18 17 22 22 O 1.21223 * 125.39628 * 179.97438 * 21 20 18 23 23 N 1.33880 * 109.20799 * 0.02562 * 21 20 18 24 24 C 1.33880 * 114.47163 * 359.97438 * 23 21 20 25 25 O 1.21232 * 125.39020 * 180.02562 * 24 23 21 26 26 H 0.97003 * 119.99482 * 5.53314 * 1 2 3 27 27 H 1.09001 * 109.47875 * 29.99396 * 10 9 7 28 28 H 1.08993 * 109.47299 * 150.00015 * 10 9 7 29 29 H 1.09001 * 109.46670 * 300.00493 * 11 10 9 30 30 H 1.09006 * 109.46739 * 59.99857 * 11 10 9 31 31 H 0.96707 * 117.00088 * 180.02562 * 14 12 11 32 32 H 1.09002 * 109.47013 * 54.17797 * 17 15 9 33 33 H 1.09001 * 109.47177 * 294.18077 * 17 15 9 34 34 H 1.08992 * 110.60636 * 237.03243 * 20 18 17 35 35 H 1.09005 * 110.60437 * 0.02562 * 20 18 17 36 36 H 0.96995 * 122.75935 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0262 -1.2395 -0.3613 9 7 1.4029 -2.3450 0.4570 10 6 0.4521 -2.2742 1.5692 11 6 1.2010 -2.4478 2.8922 12 6 0.2229 -2.3756 4.0363 13 8 -0.9527 -2.2035 3.8162 14 8 0.6576 -2.5026 5.2998 15 6 1.6819 -3.5322 -0.1166 16 8 1.0785 -4.5275 0.2250 17 6 2.7434 -3.6233 -1.1824 18 6 2.9629 -5.0897 -1.5596 19 1 2.0159 -5.5690 -1.8074 20 6 3.9539 -5.2051 -2.7358 21 6 5.1036 -5.9987 -2.1543 22 8 6.1090 -6.3184 -2.7513 23 7 4.8340 -6.2926 -0.8763 24 6 3.6567 -5.8305 -0.4374 25 8 3.2164 -5.9814 0.6820 26 1 -0.4849 0.8362 -0.0810 27 1 -0.0476 -1.3055 1.5591 28 1 -0.2891 -3.0665 1.4646 29 1 1.7007 -3.4165 2.9023 30 1 1.9422 -1.6555 2.9967 31 1 -0.0072 -2.4498 6.0002 32 1 3.6750 -3.2020 -0.8044 33 1 2.4234 -3.0656 -2.0626 34 1 3.4998 -5.7419 -3.5687 35 1 4.2908 -4.2178 -3.0519 36 1 5.4420 -6.7981 -0.3145 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185264.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:19 Heat of formation + Delta-G solvation = -191.910909 kcal Electronic energy + Delta-G solvation = -24576.069674 eV Core-core repulsion = 20639.732202 eV Total energy + Delta-G solvation = -3936.337472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67443 -39.80291 -38.77432 -38.18390 -35.83135 -35.68989 -35.01520 -33.23876 -31.95815 -30.72020 -28.28335 -25.30666 -25.09756 -23.49888 -21.66099 -20.90729 -20.14933 -19.12170 -17.81493 -17.76273 -17.10073 -16.37851 -16.13300 -15.99608 -15.78351 -15.41158 -15.04374 -14.53472 -14.39147 -14.11173 -13.88045 -13.51590 -13.22772 -12.82186 -12.67516 -12.50475 -12.12764 -11.92515 -11.43435 -11.28190 -11.14286 -11.11969 -10.97294 -10.68183 -10.53993 -10.45540 -10.21382 -10.11946 -10.04644 -9.74004 -9.23814 -8.51421 -7.62637 -6.46365 -4.15359 1.61455 2.69362 2.84308 2.88138 3.04361 3.15743 3.15948 3.42735 3.81456 4.04365 4.20876 4.28424 4.46349 4.75960 4.87860 5.04852 5.49533 5.52728 5.61551 5.70450 5.83196 5.95752 6.02702 6.16729 6.22259 6.30737 6.37462 6.72806 6.83863 6.89750 7.26217 7.38244 7.44141 7.82014 8.00736 8.24987 8.33308 8.97590 9.40005 9.84426 10.54882 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.005358 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.847141 B = 5224.428885 C = 6697.426279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.354 4.354 8 H 0.092 0.908 9 N -0.440 5.440 10 C 0.124 3.876 11 C -0.125 4.125 12 C 0.483 3.517 13 O -0.515 6.515 14 O -0.525 6.525 15 C 0.469 3.531 16 O -0.582 6.582 17 C -0.106 4.106 18 C -0.108 4.108 19 H 0.131 0.869 20 C -0.157 4.157 21 C 0.533 3.467 22 O -0.499 6.499 23 N -0.686 5.686 24 C 0.526 3.474 25 O -0.446 6.446 26 H 0.274 0.726 27 H 0.118 0.882 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.401 0.599 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 -4.436 -0.861 7.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.161 4.161 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.109 0.891 9 N -0.159 5.159 10 C 0.000 4.000 11 C -0.163 4.163 12 C 0.326 3.674 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.258 3.742 16 O -0.466 6.466 17 C -0.147 4.147 18 C -0.130 4.130 19 H 0.149 0.851 20 C -0.197 4.197 21 C 0.321 3.679 22 O -0.372 6.372 23 N -0.353 5.353 24 C 0.312 3.688 25 O -0.313 6.313 26 H 0.084 0.916 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.258 0.742 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 6.074 -4.888 -0.793 7.837 hybrid contribution 0.366 0.792 0.791 1.178 sum 6.441 -4.096 -0.002 7.632 Atomic orbital electron populations 1.69833 1.06306 1.28408 1.44131 1.25364 0.95048 0.99868 0.95776 0.86234 0.79420 0.81267 0.79212 1.19631 1.20855 1.19755 1.19361 0.97784 0.85314 1.45681 0.89072 1.43308 1.39560 1.05642 1.27367 1.21202 0.91123 1.05957 0.81705 1.21861 0.98021 1.05043 0.91425 1.23793 0.89181 0.71316 0.83152 1.90700 1.19375 1.45047 1.85094 1.84595 1.46097 1.85280 1.17655 1.20195 0.85989 0.84262 0.83790 1.90609 1.53900 1.36402 1.65722 1.21345 1.00248 0.92030 1.01036 1.21906 1.00507 0.98676 0.91893 0.85149 1.22639 0.94069 1.03302 0.99650 1.20848 0.87711 0.78076 0.81246 1.90780 1.29100 1.53283 1.64072 1.44925 1.22323 1.52863 1.15146 1.20872 0.80175 0.78082 0.89637 1.90857 1.66597 1.53598 1.20266 0.91580 0.86453 0.91488 0.88452 0.87899 0.74183 0.89756 0.87451 0.86149 0.85814 0.75184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.56 11.34 55.50 0.63 -20.93 16 2 C 0.05 1.10 4.95 -17.46 -0.09 1.02 16 3 Si 0.91 18.18 29.61 -169.99 -5.03 13.14 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.35 -8.12 8.76 -14.93 -0.13 -8.25 16 8 H 0.09 1.93 6.85 -52.49 -0.36 1.57 16 9 N -0.44 -10.21 2.54 -114.81 -0.29 -10.50 16 10 C 0.12 2.92 4.34 -4.04 -0.02 2.90 16 11 C -0.12 -2.48 6.14 -27.88 -0.17 -2.65 16 12 C 0.48 9.06 8.33 36.00 0.30 9.36 16 13 O -0.51 -11.12 16.74 -18.75 -0.31 -11.43 16 14 O -0.52 -7.74 13.42 -39.24 -0.53 -8.26 16 15 C 0.47 10.23 7.21 -10.98 -0.08 10.15 16 16 O -0.58 -14.13 13.82 -13.90 -0.19 -14.33 16 17 C -0.11 -1.71 3.70 -27.88 -0.10 -1.82 16 18 C -0.11 -1.45 2.69 -90.83 -0.24 -1.69 16 19 H 0.13 1.79 7.80 -51.93 -0.41 1.39 16 20 C -0.16 -1.51 6.67 -26.93 -0.18 -1.69 16 21 C 0.53 6.27 8.55 -11.08 -0.09 6.17 16 22 O -0.50 -7.21 18.02 5.61 0.10 -7.11 16 23 N -0.69 -8.15 5.48 -11.39 -0.06 -8.21 16 24 C 0.53 7.92 7.73 -11.09 -0.09 7.83 16 25 O -0.45 -8.69 16.15 -13.84 -0.22 -8.91 16 26 H 0.27 6.61 8.32 -40.82 -0.34 6.27 16 27 H 0.12 3.01 5.32 -51.93 -0.28 2.73 16 28 H 0.07 1.70 7.31 -51.93 -0.38 1.32 16 29 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 30 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 31 H 0.40 3.93 9.10 45.56 0.41 4.35 16 32 H 0.08 1.28 7.49 -51.93 -0.39 0.89 16 33 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.12 1.02 7.74 -51.93 -0.40 0.62 16 36 H 0.41 4.16 8.96 -40.82 -0.37 3.80 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -33.00 318.96 -4.99 -37.99 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -2.99 Total: 12.41 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: -0.89 Total: 21.33 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.28 Total: -39.64 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -1.16 Total: -50.04 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.00 -4.99 -37.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185264.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.918 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds