Wall clock time and date at job start Fri Apr 10 2020 17:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48495 * 109.47237 * 87.22178 * 3 2 1 5 5 H 1.48498 * 109.47138 * 207.22264 * 3 2 1 6 6 H 1.48504 * 109.46514 * 327.22090 * 3 2 1 7 7 C 1.40279 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99787 * 10.50571 * 7 2 1 9 9 C 1.40885 * 119.99934 * 190.51200 * 7 2 1 10 10 C 1.40714 * 120.33020 * 36.32229 * 9 7 2 11 11 C 1.37596 * 119.88143 * 179.97438 * 10 9 7 12 12 C 1.38827 * 120.57166 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67436 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.09019 * 359.69359 * 13 12 11 15 15 C 1.47437 * 120.27694 * 180.27968 * 14 13 12 16 16 O 1.21607 * 119.99890 * 175.70774 * 15 14 13 17 17 N 1.34775 * 120.00283 * 355.71167 * 15 14 13 18 18 C 1.46500 * 119.99983 * 180.02562 * 17 15 14 19 19 C 1.53001 * 109.46923 * 179.97438 * 18 17 15 20 20 S 1.81400 * 109.46867 * 179.97438 * 19 18 17 21 21 N 1.65605 * 104.44881 * 179.97438 * 20 19 18 22 22 O 1.42094 * 110.54576 * 291.62719 * 20 19 18 23 23 O 1.42102 * 110.54438 * 68.37768 * 20 19 18 24 24 H 0.96995 * 120.00424 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.05633 * 359.95638 * 10 9 7 26 26 H 1.08000 * 119.71122 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.66173 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.94745 * 179.97438 * 13 12 11 29 29 H 0.97001 * 119.99734 * 359.97438 * 17 15 14 30 30 H 1.09001 * 109.46722 * 299.99508 * 18 17 15 31 31 H 1.09001 * 109.47263 * 59.99392 * 18 17 15 32 32 H 1.09001 * 109.47351 * 299.99529 * 19 18 17 33 33 H 1.09001 * 109.47316 * 59.99830 * 19 18 17 34 34 H 0.96997 * 119.99808 * 0.02562 * 21 20 19 35 35 H 0.97003 * 119.99725 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4291 2.0804 1.3984 5 1 3.5660 1.4239 -0.6405 6 1 1.4683 2.6349 -0.7581 7 6 2.0077 -1.2149 0.0005 8 1 1.4812 -2.1423 -0.1696 9 6 3.3988 -1.2250 0.2231 10 6 3.9796 -0.3209 1.1316 11 6 5.3392 -0.3392 1.3423 12 6 6.1466 -1.2431 0.6653 13 6 5.6008 -2.1407 -0.2330 14 6 4.2278 -2.1504 -0.4632 15 6 3.6405 -3.1103 -1.4159 16 8 2.4338 -3.1676 -1.5552 17 7 4.4409 -3.9242 -2.1322 18 6 3.8574 -4.8775 -3.0792 19 6 4.9753 -5.6730 -3.7563 20 16 4.2526 -6.8539 -4.9284 21 7 5.5567 -7.6376 -5.5823 22 8 3.5421 -7.8716 -4.2367 23 8 3.6677 -6.1703 -6.0283 24 1 -0.4850 0.8400 -0.0004 25 1 3.3594 0.3863 1.6623 26 1 5.7821 0.3556 2.0405 27 1 7.2121 -1.2443 0.8416 28 1 6.2399 -2.8385 -0.7537 29 1 5.4035 -3.8783 -2.0213 30 1 3.1964 -5.5609 -2.5460 31 1 3.2877 -4.3366 -3.8349 32 1 5.6360 -4.9894 -4.2896 33 1 5.5453 -6.2139 -3.0009 34 1 6.4546 -7.4051 -5.2985 35 1 5.4226 -8.3297 -6.2486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624830722.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:29 Heat of formation + Delta-G solvation = -86.112794 kcal Electronic energy + Delta-G solvation = -21400.590573 eV Core-core repulsion = 17911.593722 eV Total energy + Delta-G solvation = -3488.996851 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 298.082 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.18891 -37.21036 -37.18602 -36.13475 -34.99559 -33.67647 -33.51085 -31.36765 -30.51524 -29.52640 -25.53610 -23.89029 -22.24990 -21.01388 -19.92019 -19.54380 -17.86205 -17.78330 -17.49615 -16.70037 -16.40451 -15.81525 -15.33487 -15.11114 -14.99861 -14.21640 -14.15608 -13.58516 -13.57955 -12.74653 -12.63279 -12.37867 -12.34946 -12.29553 -12.17985 -12.13627 -11.83224 -11.48655 -11.23032 -10.98433 -10.76441 -10.75654 -10.49625 -10.21860 -9.85628 -9.30086 -8.62719 -8.57158 -7.88525 -7.64959 -6.94599 -4.53760 -0.07474 2.03491 2.55194 2.58184 3.05480 3.14795 3.25329 3.31624 3.82241 3.90161 3.93727 4.01627 4.18604 4.53506 4.68912 5.02652 5.32592 5.54394 5.57031 5.64316 5.71345 5.89848 6.00023 6.31050 6.44747 6.67919 6.73487 6.86298 7.04052 7.16812 7.32693 7.52594 7.69299 7.95760 8.16948 8.42584 8.58092 8.81132 9.23508 10.01997 Molecular weight = 298.08amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.003728 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.124307 B = 7507.977958 C = 8334.506510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.242 1.242 6 H -0.288 1.288 7 C -0.401 4.401 8 H 0.125 0.875 9 C 0.117 3.883 10 C -0.224 4.224 11 C -0.065 4.065 12 C -0.255 4.255 13 C -0.041 4.041 14 C -0.252 4.252 15 C 0.560 3.440 16 O -0.523 6.523 17 N -0.744 5.744 18 C 0.137 3.863 19 C -0.639 4.639 20 S 2.625 3.375 21 N -1.253 6.253 22 O -0.957 6.957 23 O -0.957 6.957 24 H 0.288 0.712 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.395 0.605 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.412 0.588 35 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.802 -8.952 -7.213 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.166 1.166 6 H -0.215 1.215 7 C -0.427 4.427 8 H 0.142 0.858 9 C 0.112 3.888 10 C -0.243 4.243 11 C -0.083 4.083 12 C -0.275 4.275 13 C -0.060 4.060 14 C -0.257 4.257 15 C 0.353 3.647 16 O -0.400 6.400 17 N -0.401 5.401 18 C 0.011 3.989 19 C -0.768 4.768 20 S 2.715 3.285 21 N -0.926 5.926 22 O -0.946 6.946 23 O -0.946 6.946 24 H 0.099 0.901 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.229 0.771 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.238 0.762 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 11.488 -8.971 -7.473 16.379 hybrid contribution 1.865 0.883 0.237 2.077 sum 13.353 -8.088 -7.236 17.206 Atomic orbital electron populations 1.69564 1.08243 1.30487 1.32910 1.26406 0.94889 1.01721 0.91255 0.86373 0.81313 0.79710 0.79222 1.19374 1.16555 1.21506 1.20235 0.90889 0.96690 1.34899 0.85773 1.17531 0.93116 0.89487 0.88693 1.21164 0.94725 1.04908 1.03517 1.20744 0.93725 0.96657 0.97224 1.20276 0.97873 1.03193 1.06114 1.20752 0.93457 0.96048 0.95716 1.19324 0.92780 1.07127 1.06424 1.18425 0.86265 0.79960 0.80023 1.90751 1.14156 1.68374 1.66721 1.45905 1.10063 1.40093 1.44024 1.20701 0.92476 0.92241 0.93461 1.30713 1.12014 1.16806 1.17244 1.04469 0.73364 0.75289 0.75380 1.53164 1.23643 1.56251 1.59544 1.93632 1.69945 1.55360 1.75710 1.93635 1.74669 1.75848 1.50465 0.90136 0.87713 0.88526 0.88526 0.88776 0.77054 0.90253 0.90229 0.84041 0.84061 0.76245 0.75065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.33 13.92 55.56 0.77 -20.56 16 2 C 0.08 2.07 5.47 -17.30 -0.09 1.98 16 3 Si 0.91 20.50 24.51 -169.99 -4.17 16.33 16 4 H -0.27 -5.74 6.76 56.52 0.38 -5.36 16 5 H -0.24 -5.59 6.72 56.52 0.38 -5.21 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.40 -11.15 8.31 -37.81 -0.31 -11.46 16 8 H 0.12 3.83 5.96 -52.49 -0.31 3.51 16 9 C 0.12 2.95 5.03 -106.54 -0.54 2.42 16 10 C -0.22 -5.20 7.00 -38.88 -0.27 -5.47 16 11 C -0.06 -1.31 10.01 -39.60 -0.40 -1.71 16 12 C -0.26 -4.82 10.03 -39.37 -0.39 -5.22 16 13 C -0.04 -0.78 9.52 -39.22 -0.37 -1.15 16 14 C -0.25 -5.74 5.92 -104.37 -0.62 -6.36 16 15 C 0.56 12.39 7.72 -12.51 -0.10 12.29 16 16 O -0.52 -13.73 13.54 5.27 0.07 -13.66 16 17 N -0.74 -11.93 5.51 -61.38 -0.34 -12.27 16 18 C 0.14 1.89 5.68 -4.04 -0.02 1.86 16 19 C -0.64 -4.89 6.20 37.16 0.23 -4.66 16 20 S 2.63 23.68 5.97 -107.50 -0.64 23.04 16 21 N -1.25 -6.05 9.43 60.35 0.57 -5.48 16 22 O -0.96 -12.58 18.10 -57.54 -1.04 -13.62 16 23 O -0.96 -12.67 18.10 -57.54 -1.04 -13.71 16 24 H 0.29 6.97 8.29 -40.82 -0.34 6.63 16 25 H 0.11 2.40 5.00 -52.49 -0.26 2.13 16 26 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 27 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.09 1.39 6.42 -52.49 -0.34 1.05 16 29 H 0.39 4.97 6.52 -40.82 -0.27 4.71 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.14 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.14 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.41 0.70 8.83 -34.47 -0.30 0.39 16 35 H 0.42 1.72 8.96 -34.47 -0.31 1.41 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -37.40 309.27 -7.55 -44.95 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -3.50 Total: 7.80 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -2.89 Total: -17.48 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 1.00 Total: -38.31 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -2.01 Total: -40.99 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.17 Total: 16.33 kcal Atomic # 16 Polarization: 23.68 SS G_CDS: -0.64 Total: 23.04 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -37.40 -7.55 -44.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624830722.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.160 kcal (2) G-P(sol) polarization free energy of solvation -37.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds