Wall clock time and date at job start Fri Apr 10 2020 17:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 119.99927 * 2 1 4 4 H 1.48499 * 109.47385 * 270.00542 * 3 2 1 5 5 H 1.48504 * 109.47308 * 30.00351 * 3 2 1 6 6 H 1.48508 * 109.47032 * 150.00428 * 3 2 1 7 7 C 1.38820 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99614 * 179.97438 * 7 2 1 9 9 O 1.34839 * 120.00121 * 359.97438 * 7 2 1 10 10 C 1.34834 * 117.00023 * 179.97438 * 9 7 2 11 11 O 1.21600 * 120.00004 * 0.02562 * 10 9 7 12 12 C 1.46843 * 119.99628 * 179.97438 * 10 9 7 13 13 C 1.38216 * 126.50848 * 186.35559 * 12 10 9 14 14 C 1.39199 * 107.68679 * 179.97438 * 13 12 10 15 15 C 1.50705 * 125.57125 * 180.02562 * 14 13 12 16 16 C 1.52994 * 117.50130 * 343.61940 * 15 14 13 17 17 C 1.53002 * 117.49743 * 274.99209 * 15 14 13 18 18 N 1.31039 * 108.85619 * 359.73669 * 14 13 12 19 19 N 1.37024 * 126.51470 * 6.33023 * 12 10 9 20 20 C 1.40003 * 126.17250 * 359.97438 * 19 12 10 21 21 C 1.38888 * 120.07316 * 225.94007 * 20 19 12 22 22 C 1.38097 * 119.93039 * 179.97438 * 21 20 19 23 23 C 1.38293 * 120.07292 * 359.97438 * 22 21 20 24 24 C 1.38291 * 120.14333 * 0.02562 * 23 22 21 25 25 C 1.38113 * 120.06562 * 359.97438 * 24 23 22 26 26 H 0.96994 * 120.00252 * 359.97438 * 1 2 3 27 27 H 1.08003 * 126.15625 * 359.97438 * 13 12 10 28 28 H 1.09001 * 115.54712 * 129.32911 * 15 14 13 29 29 H 1.09006 * 117.49835 * 359.97438 * 16 15 14 30 30 H 1.08995 * 117.50253 * 145.02148 * 16 15 14 31 31 H 1.08995 * 117.49914 * 214.98389 * 17 15 14 32 32 H 1.08998 * 117.49443 * 359.97438 * 17 15 14 33 33 H 1.08006 * 120.02897 * 0.02562 * 21 20 19 34 34 H 1.07994 * 119.96543 * 180.25783 * 22 21 20 35 35 H 1.07997 * 119.93112 * 179.97438 * 23 22 21 36 36 H 1.07997 * 119.96715 * 179.97438 * 24 23 22 37 37 H 1.08005 * 120.02826 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0083 -1.2022 -0.0005 8 1 3.0882 -1.2021 -0.0010 9 8 1.3341 -2.3700 -0.0005 10 6 2.0685 -3.5008 -0.0016 11 8 3.2828 -3.4371 -0.0021 12 6 1.4017 -4.8091 -0.0011 13 6 2.0123 -6.0431 0.1209 14 6 1.0163 -7.0143 0.0727 15 6 1.2370 -8.5020 0.1701 16 6 2.6594 -9.0210 -0.0492 17 6 1.5884 -9.2497 -1.1177 18 7 -0.1452 -6.4234 -0.0649 19 7 0.0562 -5.0386 -0.1210 20 6 -0.9385 -4.0642 -0.2666 21 6 -2.0993 -4.1358 0.4926 22 6 -3.0783 -3.1727 0.3470 23 6 -2.9036 -2.1374 -0.5530 24 6 -1.7490 -2.0632 -1.3105 25 6 -0.7661 -3.0232 -1.1696 26 1 -0.4850 0.8400 0.0004 27 1 3.0715 -6.2216 0.2334 28 1 0.6182 -9.0221 0.9012 29 1 3.4356 -8.2865 -0.2643 30 1 2.9768 -9.8828 0.5378 31 1 1.2011 -10.2620 -1.2335 32 1 1.6595 -8.6657 -2.0353 33 1 -2.2358 -4.9434 1.1966 34 1 -3.9794 -3.2256 0.9400 35 1 -3.6709 -1.3858 -0.6653 36 1 -1.6157 -1.2537 -2.0128 37 1 0.1353 -2.9648 -1.7617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007233262.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:13 Heat of formation + Delta-G solvation = 46.699811 kcal Electronic energy + Delta-G solvation = -23733.655341 eV Core-core repulsion = 20250.806820 eV Total energy + Delta-G solvation = -3482.848521 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.71829 -40.80067 -39.86074 -37.96323 -37.35142 -34.46420 -34.02740 -32.13794 -31.50716 -29.86882 -27.81132 -25.38584 -24.99793 -23.61040 -23.16567 -22.88946 -21.10276 -20.60643 -19.88976 -19.45858 -17.82073 -17.29566 -17.12083 -16.77038 -16.28567 -16.24028 -15.91356 -15.69357 -15.17673 -14.99371 -14.63316 -14.51262 -14.31071 -13.73261 -13.39475 -13.23660 -13.02932 -12.57961 -12.52509 -12.32482 -12.27987 -12.20945 -12.07336 -11.98306 -11.70476 -11.36853 -11.25056 -10.67848 -10.56984 -10.24280 -9.73725 -9.20950 -8.51156 -6.29389 -0.40294 0.52509 0.57162 1.12263 1.25396 1.36038 1.42092 1.49213 1.95680 2.02528 2.49127 2.82777 2.95352 2.99611 3.36086 3.86043 3.93827 4.00450 4.02638 4.04359 4.24860 4.28597 4.30347 4.50837 4.56558 4.64202 4.73308 4.82918 4.85696 5.05158 5.12150 5.12818 5.20283 5.30618 5.34096 5.45121 5.54814 5.67037 5.75626 5.79482 6.16170 6.37623 6.48999 6.87094 7.58251 8.61393 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.016028 B = 0.005557 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.473889 B = 5037.166559 C = 6544.331446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.019 3.981 3 Si 1.010 2.990 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.274 1.274 7 C -0.429 4.429 8 H 0.077 0.923 9 O -0.198 6.198 10 C 0.438 3.562 11 O -0.564 6.564 12 C 0.049 3.951 13 C -0.194 4.194 14 C 0.104 3.896 15 C -0.098 4.098 16 C -0.152 4.152 17 C -0.156 4.156 18 N -0.278 5.278 19 N -0.304 5.304 20 C 0.108 3.892 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.105 4.105 24 C -0.061 4.061 25 C -0.079 4.079 26 H 0.281 0.719 27 H 0.172 0.828 28 H 0.140 0.860 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.123 0.877 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 -10.237 -0.751 11.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.187 4.187 3 Si 0.830 3.170 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.198 1.198 7 C -0.504 4.504 8 H 0.095 0.905 9 O -0.103 6.103 10 C 0.286 3.714 11 O -0.462 6.462 12 C -0.076 4.076 13 C -0.224 4.224 14 C -0.060 4.060 15 C -0.118 4.118 16 C -0.189 4.189 17 C -0.194 4.194 18 N -0.101 5.101 19 N -0.083 5.083 20 C 0.018 3.982 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.079 4.079 25 C -0.099 4.099 26 H 0.091 0.909 27 H 0.189 0.811 28 H 0.157 0.843 29 H 0.111 0.889 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.100 0.900 33 H 0.147 0.853 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.141 0.859 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.565 -10.101 -0.861 12.078 hybrid contribution 1.809 1.223 0.072 2.184 sum -4.756 -8.878 -0.789 10.103 Atomic orbital electron populations 1.70055 1.06499 1.29258 1.42387 1.26251 0.97063 1.00988 0.94440 0.84730 0.77711 0.75279 0.79290 1.18706 1.18225 1.19839 1.21469 0.92260 0.80856 1.55802 0.90515 1.84139 1.38513 1.13335 1.74342 1.20054 0.85682 0.84950 0.80678 1.90641 1.15092 1.87665 1.52833 1.20824 0.84737 0.93689 1.08346 1.21810 1.01750 0.87997 1.10803 1.21867 0.88872 0.96676 0.98590 1.20338 1.02705 0.84753 1.03956 1.23177 0.90296 1.03453 1.01991 1.23091 1.02537 1.01764 0.91984 1.77277 1.23386 0.85202 1.24207 1.46224 1.03399 1.04629 1.54072 1.17664 0.90042 0.89857 1.00611 1.21024 0.93034 1.01036 0.98903 1.21267 0.99129 0.93424 0.98708 1.21463 0.97549 0.98177 0.95149 1.20780 0.92513 0.95373 0.99273 1.20663 0.98065 0.94445 0.96743 0.90874 0.81101 0.84277 0.88928 0.85037 0.85398 0.90049 0.85284 0.81965 0.82882 0.85949 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.30 12.42 21.64 0.27 -43.03 16 2 C 0.02 0.96 5.50 84.89 0.47 1.43 16 3 Si 1.01 40.92 29.55 68.60 2.03 42.94 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.43 -25.00 9.65 67.96 0.66 -24.34 16 8 H 0.08 4.66 6.86 -2.91 -0.02 4.64 16 9 O -0.20 -11.40 5.64 10.45 0.06 -11.34 16 10 C 0.44 24.21 7.45 70.07 0.52 24.73 16 11 O -0.56 -32.97 16.15 19.51 0.32 -32.65 16 12 C 0.05 2.33 6.78 40.58 0.28 2.60 16 13 C -0.19 -7.64 9.91 22.50 0.22 -7.42 16 14 C 0.10 3.57 6.81 42.91 0.29 3.86 16 15 C -0.10 -2.29 6.33 -11.54 -0.07 -2.36 16 16 C -0.15 -2.73 10.01 30.59 0.31 -2.43 16 17 C -0.16 -2.94 10.24 30.60 0.31 -2.63 16 18 N -0.28 -10.94 12.42 -47.70 -0.59 -11.53 16 19 N -0.30 -13.53 3.72 -176.37 -0.66 -14.19 16 20 C 0.11 4.71 5.85 38.15 0.22 4.93 16 21 C -0.12 -4.43 9.89 22.39 0.22 -4.21 16 22 C -0.11 -3.27 10.04 22.25 0.22 -3.05 16 23 C -0.11 -3.35 10.04 22.30 0.22 -3.13 16 24 C -0.06 -2.36 8.80 22.25 0.20 -2.16 16 25 C -0.08 -3.53 7.17 22.39 0.16 -3.37 16 26 H 0.28 13.01 8.31 -92.71 -0.77 12.24 16 27 H 0.17 6.07 7.36 -2.91 -0.02 6.05 16 28 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.09 1.87 7.12 -2.38 -0.02 1.85 16 30 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 35 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.12 4.65 8.06 -2.91 -0.02 4.62 16 37 H 0.09 4.43 6.84 -2.91 -0.02 4.41 16 Total: -1.00 -69.85 326.99 6.75 -63.10 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 1.10 Total: 24.26 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.23 Total: -17.56 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -0.98 Total: -68.75 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: 0.37 Total: -44.00 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -69.85 6.75 -63.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007233262.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.804 kcal (2) G-P(sol) polarization free energy of solvation -69.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds