Wall clock time and date at job start Fri Apr 10 2020 17:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36579 * 125.78259 * 2 1 4 4 H 0.97008 * 125.91141 * 0.02562 * 3 2 1 5 5 N 1.40123 * 108.17064 * 179.97438 * 3 2 1 6 6 C 1.38309 * 126.16003 * 179.97438 * 5 3 2 7 7 N 1.30898 * 125.05084 * 179.72280 * 6 5 3 8 8 C 1.35848 * 109.61886 * 179.86612 * 7 6 5 9 9 C 1.39731 * 133.41359 * 180.08679 * 8 7 6 10 10 C 1.37666 * 119.77949 * 180.33453 * 9 8 7 11 11 C 1.38724 * 120.50279 * 359.97438 * 10 9 8 12 12 C 1.37941 * 120.43947 * 0.02562 * 11 10 9 13 13 C 1.38696 * 119.84810 * 359.97438 * 12 11 10 14 14 N 1.36518 * 125.05807 * 0.02567 * 6 5 3 15 15 H 0.96996 * 126.37791 * 359.97438 * 14 6 5 16 16 C 1.34868 * 107.67065 * 0.02562 * 5 3 2 17 17 O 1.21773 * 126.18167 * 179.97438 * 16 5 3 18 18 C 1.34882 * 125.78089 * 179.69241 * 2 1 3 19 19 C 1.50706 * 125.95211 * 359.97438 * 18 2 1 20 20 C 1.50695 * 109.47415 * 95.00122 * 19 18 2 21 21 H 1.08007 * 119.99753 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00576 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99426 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00309 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47188 * 60.00266 * 24 22 20 26 26 H 1.48495 * 109.47025 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47156 * 300.00191 * 24 22 20 28 28 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46980 * 240.02513 * 1 2 3 30 30 H 1.09004 * 109.47113 * 120.02493 * 1 2 3 31 31 H 1.08002 * 120.11077 * 0.30869 * 9 8 7 32 32 H 1.08001 * 119.74834 * 180.02562 * 10 9 8 33 33 H 1.07998 * 119.77657 * 180.02562 * 11 10 9 34 34 H 1.07999 * 120.07427 * 179.97438 * 12 11 10 35 35 H 1.09003 * 109.46658 * 214.99959 * 19 18 2 36 36 H 1.08997 * 109.47343 * 334.99405 * 19 18 2 37 37 H 0.96993 * 119.99626 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3056 1.1080 0.0000 4 1 2.0009 2.0290 0.0004 5 7 3.6412 0.6840 0.0006 6 6 4.7569 1.5014 0.0003 7 7 5.9966 1.0813 0.0060 8 6 6.8393 2.1468 0.0008 9 6 8.2311 2.2704 0.0016 10 6 8.8065 3.5210 0.0019 11 6 8.0150 4.6603 0.0009 12 6 6.6396 4.5556 0.0000 13 6 6.0425 3.3037 -0.0003 14 7 4.7290 2.8663 -0.0002 15 1 3.9365 3.4255 -0.0007 16 6 3.6426 -0.6647 0.0004 17 8 4.6262 -1.3825 0.0003 18 6 2.2957 -1.0942 0.0059 19 6 1.8233 -2.5253 0.0141 20 6 1.7829 -3.0492 -1.3983 21 1 2.0702 -2.4096 -2.2199 22 6 1.3793 -4.3448 -1.6419 23 7 1.0300 -5.1238 -0.6414 24 14 1.3286 -4.9939 -3.3927 25 1 2.6881 -4.9242 -3.9860 26 1 0.8633 -6.4040 -3.3845 27 1 0.3936 -4.1692 -4.1994 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5135 0.8902 30 1 -0.3633 -0.5142 -0.8898 31 1 8.8535 1.3876 0.0025 32 1 9.8824 3.6159 0.0022 33 1 8.4788 5.6356 0.0007 34 1 6.0290 5.4464 -0.0005 35 1 2.5091 -3.1308 0.6067 36 1 0.8252 -2.5760 0.4491 37 1 0.7457 -6.0351 -0.8127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009060127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:22 Heat of formation + Delta-G solvation = 128.238753 kcal Electronic energy + Delta-G solvation = -22961.701191 eV Core-core repulsion = 19514.681216 eV Total energy + Delta-G solvation = -3447.019976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.117 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41788 -41.18789 -37.41610 -36.77574 -34.22415 -33.32959 -32.63786 -30.53963 -30.08613 -29.62079 -27.97138 -26.96967 -23.61863 -22.56024 -22.52546 -21.73749 -20.25686 -19.59139 -18.80255 -17.49284 -16.86731 -16.51242 -16.05654 -15.90795 -14.80559 -14.79183 -14.56133 -14.44030 -14.35894 -14.02624 -13.19342 -13.10748 -12.45456 -12.31786 -12.18593 -12.11184 -11.77600 -11.67770 -11.66519 -11.17993 -10.95007 -10.70294 -10.53357 -9.97923 -9.88253 -9.68780 -9.32984 -9.24225 -8.47864 -8.29670 -7.88935 -7.23118 -5.91582 -3.94005 0.77283 1.32636 1.32804 1.91538 2.35576 2.77376 3.39068 3.43848 3.48220 3.73596 3.91716 3.98989 4.22293 4.55277 4.69453 4.86696 4.92844 5.06092 5.11132 5.29494 5.30269 5.41873 5.52880 5.68719 5.83391 5.87788 5.89413 6.19597 6.23360 6.31450 6.36722 6.41955 6.69384 6.92850 7.04517 7.26239 7.56558 7.63596 7.82695 8.01291 8.03806 8.45677 8.63722 9.08781 9.68437 11.17750 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.003593 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.125149 B = 7791.143048 C = 8478.204165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.151 3.849 3 N -0.519 5.519 4 H 0.431 0.569 5 N -0.347 5.347 6 C 0.537 3.463 7 N -0.477 5.477 8 C 0.074 3.926 9 C -0.067 4.067 10 C -0.124 4.124 11 C -0.111 4.111 12 C -0.107 4.107 13 C 0.045 3.955 14 N -0.617 5.617 15 H 0.418 0.582 16 C 0.549 3.451 17 O -0.473 6.473 18 C -0.228 4.228 19 C 0.097 3.903 20 C -0.505 4.505 21 H 0.052 0.948 22 C 0.059 3.941 23 N -0.896 5.896 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.278 1.278 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.063 23.037 2.802 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.250 5.250 4 H 0.275 0.725 5 N -0.168 5.168 6 C 0.184 3.816 7 N -0.205 5.205 8 C -0.044 4.044 9 C -0.087 4.087 10 C -0.144 4.144 11 C -0.131 4.131 12 C -0.128 4.128 13 C -0.063 4.063 14 N -0.236 5.236 15 H 0.256 0.744 16 C 0.346 3.654 17 O -0.340 6.340 18 C -0.240 4.240 19 C 0.059 3.941 20 C -0.543 4.543 21 H 0.070 0.930 22 C -0.142 4.142 23 N -0.535 5.535 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.204 1.204 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.043 21.536 2.852 22.301 hybrid contribution -0.914 1.387 -1.062 1.972 sum 4.129 22.923 1.790 23.361 Atomic orbital electron populations 1.20527 0.85792 1.02272 1.05611 1.20773 0.93457 0.84209 0.97217 1.43434 0.92193 1.07685 1.81700 0.72451 1.44955 0.93848 1.06295 1.71712 1.19152 0.87135 0.77771 0.97585 1.70941 0.95572 1.27853 1.26152 1.19008 0.94289 0.87265 1.03880 1.20315 0.90654 0.98276 0.99501 1.20883 0.99973 0.91518 1.02076 1.20824 0.92201 0.98805 1.01265 1.19852 0.94905 0.93153 1.04889 1.18652 0.82964 0.96659 1.08005 1.42760 1.07754 1.05671 1.67409 0.74401 1.17530 0.92106 0.77142 0.78657 1.90901 1.39958 1.53855 1.49320 1.21218 0.89851 0.99022 1.13936 1.17609 0.96179 0.82802 0.97518 1.21040 1.43997 0.97116 0.92182 0.92958 1.24958 0.95567 0.96776 0.96921 1.69936 1.45407 1.07623 1.30543 0.86658 0.78474 0.77775 0.85124 1.20232 1.21299 1.20371 0.91979 0.88922 0.88166 0.84916 0.85220 0.85308 0.86091 0.94923 0.94898 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.80 36.01 0.35 -0.64 16 2 C 0.15 2.41 7.21 -81.67 -0.59 1.82 16 3 N -0.52 -6.97 7.23 33.68 0.24 -6.73 16 4 H 0.43 3.55 8.91 -182.57 -1.63 1.92 16 5 N -0.35 -6.33 3.73 -15.27 -0.06 -6.38 16 6 C 0.54 9.30 8.74 -319.58 -2.79 6.51 16 7 N -0.48 -9.43 10.46 -11.44 -0.12 -9.55 16 8 C 0.07 1.19 7.22 -84.69 -0.61 0.58 16 9 C -0.07 -0.88 10.10 -39.23 -0.40 -1.27 16 10 C -0.12 -1.20 10.01 -39.61 -0.40 -1.60 16 11 C -0.11 -0.97 10.03 -39.51 -0.40 -1.36 16 12 C -0.11 -1.04 10.06 -39.52 -0.40 -1.43 16 13 C 0.05 0.59 7.30 -83.87 -0.61 -0.02 16 14 N -0.62 -7.60 6.27 -11.11 -0.07 -7.67 16 15 H 0.42 3.33 8.91 -40.82 -0.36 2.97 16 16 C 0.55 12.78 7.85 -15.03 -0.12 12.66 16 17 O -0.47 -13.00 17.17 5.12 0.09 -12.91 16 18 C -0.23 -5.00 5.32 -104.62 -0.56 -5.56 16 19 C 0.10 2.52 5.25 -29.03 -0.15 2.37 16 20 C -0.50 -14.40 9.09 -34.44 -0.31 -14.71 16 21 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 24 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.03 0.83 7.72 -51.93 -0.40 0.43 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -38.08 328.84 -11.64 -49.72 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.32 Total: -1.40 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -7.08 Total: -1.07 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.73 Total: -56.32 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -38.08 -11.64 -49.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009060127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.955 kcal (2) G-P(sol) polarization free energy of solvation -38.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds