Wall clock time and date at job start Fri Apr 10 2020 17:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.36579 * 125.78259 * 2 1 4 4 H 0.97008 * 125.91141 * 0.02562 * 3 2 1 5 5 N 1.40123 * 108.17064 * 179.97438 * 3 2 1 6 6 C 1.38309 * 126.16003 * 179.97438 * 5 3 2 7 7 N 1.30898 * 125.05084 * 179.72280 * 6 5 3 8 8 C 1.35848 * 109.61886 * 179.86612 * 7 6 5 9 9 C 1.39731 * 133.41359 * 180.08679 * 8 7 6 10 10 C 1.37666 * 119.77949 * 180.33453 * 9 8 7 11 11 C 1.38724 * 120.50279 * 359.97438 * 10 9 8 12 12 C 1.37941 * 120.43947 * 0.02562 * 11 10 9 13 13 C 1.38696 * 119.84810 * 359.97438 * 12 11 10 14 14 N 1.36518 * 125.05807 * 0.02567 * 6 5 3 15 15 H 0.96996 * 126.37791 * 359.97438 * 14 6 5 16 16 C 1.34868 * 107.67065 * 0.02562 * 5 3 2 17 17 O 1.21773 * 126.18167 * 179.97438 * 16 5 3 18 18 C 1.34882 * 125.78089 * 179.69241 * 2 1 3 19 19 C 1.50706 * 125.95211 * 359.97438 * 18 2 1 20 20 C 1.50695 * 109.47415 * 95.00122 * 19 18 2 21 21 H 1.08007 * 119.99753 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00576 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99426 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00309 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47188 * 60.00266 * 24 22 20 26 26 H 1.48495 * 109.47025 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47156 * 300.00191 * 24 22 20 28 28 H 1.09002 * 109.47152 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46980 * 240.02513 * 1 2 3 30 30 H 1.09004 * 109.47113 * 120.02493 * 1 2 3 31 31 H 1.08002 * 120.11077 * 0.30869 * 9 8 7 32 32 H 1.08001 * 119.74834 * 180.02562 * 10 9 8 33 33 H 1.07998 * 119.77657 * 180.02562 * 11 10 9 34 34 H 1.07999 * 120.07427 * 179.97438 * 12 11 10 35 35 H 1.09003 * 109.46658 * 214.99959 * 19 18 2 36 36 H 1.08997 * 109.47343 * 334.99405 * 19 18 2 37 37 H 0.96993 * 119.99626 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3056 1.1080 0.0000 4 1 2.0009 2.0290 0.0004 5 7 3.6412 0.6840 0.0006 6 6 4.7569 1.5014 0.0003 7 7 5.9966 1.0813 0.0060 8 6 6.8393 2.1468 0.0008 9 6 8.2311 2.2704 0.0016 10 6 8.8065 3.5210 0.0019 11 6 8.0150 4.6603 0.0009 12 6 6.6396 4.5556 0.0000 13 6 6.0425 3.3037 -0.0003 14 7 4.7290 2.8663 -0.0002 15 1 3.9365 3.4255 -0.0007 16 6 3.6426 -0.6647 0.0004 17 8 4.6262 -1.3825 0.0003 18 6 2.2957 -1.0942 0.0059 19 6 1.8233 -2.5253 0.0141 20 6 1.7829 -3.0492 -1.3983 21 1 2.0702 -2.4096 -2.2199 22 6 1.3793 -4.3448 -1.6419 23 7 1.0300 -5.1238 -0.6414 24 14 1.3286 -4.9939 -3.3927 25 1 2.6881 -4.9242 -3.9860 26 1 0.8633 -6.4040 -3.3845 27 1 0.3936 -4.1692 -4.1994 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5135 0.8902 30 1 -0.3633 -0.5142 -0.8898 31 1 8.8535 1.3876 0.0025 32 1 9.8824 3.6159 0.0022 33 1 8.4788 5.6356 0.0007 34 1 6.0290 5.4464 -0.0005 35 1 2.5091 -3.1308 0.6067 36 1 0.8252 -2.5760 0.4491 37 1 0.7457 -6.0351 -0.8127 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009060127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:21 Heat of formation + Delta-G solvation = 101.946021 kcal Electronic energy + Delta-G solvation = -22962.841330 eV Core-core repulsion = 19514.681216 eV Total energy + Delta-G solvation = -3448.160114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.117 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.62261 -42.55308 -38.44651 -38.34510 -35.87606 -34.52559 -34.40497 -32.22749 -31.03136 -30.69540 -29.42613 -28.48283 -25.43819 -23.84387 -23.51122 -22.94285 -21.69086 -20.99385 -20.07962 -18.57511 -18.42317 -17.91517 -17.63148 -17.34251 -16.48708 -16.21470 -16.09692 -15.57049 -15.34425 -14.88995 -14.52346 -14.40762 -14.31597 -14.02867 -13.47410 -13.25048 -13.06306 -12.92906 -12.76844 -12.60086 -12.55691 -12.52283 -12.05949 -11.76765 -11.56959 -11.20750 -10.90557 -10.89361 -10.50226 -9.38314 -9.10264 -8.79620 -8.08967 -6.21550 -0.27872 -0.00876 0.42987 0.56531 1.30626 1.39206 1.44746 1.51235 1.58549 2.23572 2.48150 2.81296 2.84012 3.16368 3.20292 3.66272 3.82672 3.99402 4.14399 4.20650 4.31867 4.36117 4.43581 4.60850 4.78467 4.86924 4.97597 5.04910 5.18381 5.28596 5.38508 5.45599 5.46530 5.53289 5.59008 5.83392 5.87731 5.97495 6.07861 6.30760 6.49229 6.75895 6.88349 7.05833 7.44976 8.98039 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.023521 B = 0.003593 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.125149 B = 7791.143048 C = 8478.204165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.219 3.781 3 N -0.474 5.474 4 H 0.462 0.538 5 N -0.350 5.350 6 C 0.510 3.490 7 N -0.535 5.535 8 C 0.022 3.978 9 C -0.096 4.096 10 C -0.111 4.111 11 C -0.094 4.094 12 C -0.101 4.101 13 C 0.046 3.954 14 N -0.587 5.587 15 H 0.439 0.561 16 C 0.529 3.471 17 O -0.551 6.551 18 C -0.308 4.308 19 C 0.115 3.885 20 C -0.520 4.520 21 H 0.044 0.956 22 C 0.005 3.995 23 N -0.929 5.929 24 Si 0.957 3.043 25 H -0.286 1.286 26 H -0.278 1.278 27 H -0.256 1.256 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.122 0.878 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.162 0.838 35 H -0.024 1.024 36 H 0.035 0.965 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 28.556 1.923 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.106 3.894 3 N -0.206 5.206 4 H 0.314 0.686 5 N -0.169 5.169 6 C 0.156 3.844 7 N -0.264 5.264 8 C -0.095 4.095 9 C -0.116 4.116 10 C -0.130 4.130 11 C -0.113 4.113 12 C -0.122 4.122 13 C -0.062 4.062 14 N -0.209 5.209 15 H 0.282 0.718 16 C 0.329 3.671 17 O -0.426 6.426 18 C -0.320 4.320 19 C 0.077 3.923 20 C -0.559 4.559 21 H 0.062 0.938 22 C -0.192 4.192 23 N -0.570 5.570 24 Si 0.782 3.218 25 H -0.212 1.212 26 H -0.203 1.203 27 H -0.180 1.180 28 H 0.140 0.860 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.140 0.860 32 H 0.180 0.820 33 H 0.192 0.808 34 H 0.180 0.820 35 H -0.006 1.006 36 H 0.053 0.947 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.852 27.223 1.973 27.564 hybrid contribution -0.433 -0.017 -0.731 0.849 sum 3.419 27.206 1.242 27.448 Atomic orbital electron populations 1.20834 0.81619 1.06285 1.05681 1.21287 0.95157 0.82888 0.90072 1.43531 0.90101 1.08850 1.78094 0.68649 1.44480 0.95736 1.05603 1.71034 1.18829 0.86207 0.79454 0.99939 1.70733 0.97691 1.31277 1.26660 1.19466 0.95602 0.87638 1.06831 1.20558 0.89849 0.99847 1.01331 1.21329 1.01876 0.90354 0.99490 1.21446 0.91799 1.00215 0.97878 1.20394 0.95824 0.92786 1.03184 1.19024 0.82435 0.97018 1.07766 1.42447 1.08697 1.03657 1.66080 0.71781 1.17660 0.91924 0.78540 0.78980 1.90817 1.41833 1.56092 1.53844 1.20618 0.90657 0.98728 1.22016 1.17140 0.94692 0.85138 0.95361 1.21384 1.43571 0.97600 0.93320 0.93813 1.25829 0.95174 0.97003 1.01238 1.70058 1.46244 1.07955 1.32693 0.85633 0.78261 0.77766 0.80158 1.21214 1.20311 1.17984 0.86000 0.87947 0.88692 0.86013 0.81975 0.80754 0.82032 1.00616 0.94710 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 9.80 71.24 0.70 -1.02 16 2 C 0.22 6.70 7.21 41.05 0.30 6.99 16 3 N -0.47 -11.66 7.23 -47.36 -0.34 -12.00 16 4 H 0.46 5.40 8.91 -213.29 -1.90 3.50 16 5 N -0.35 -13.15 3.73 -320.37 -1.19 -14.34 16 6 C 0.51 18.19 8.74 260.36 2.28 20.47 16 7 N -0.53 -22.77 10.46 -190.11 -1.99 -24.76 16 8 C 0.02 0.72 7.22 39.43 0.28 1.01 16 9 C -0.10 -2.54 10.10 22.50 0.23 -2.31 16 10 C -0.11 -1.81 10.01 22.25 0.22 -1.59 16 11 C -0.09 -1.15 10.03 22.32 0.22 -0.92 16 12 C -0.10 -1.49 10.06 22.31 0.22 -1.26 16 13 C 0.05 1.11 7.30 38.75 0.28 1.39 16 14 N -0.59 -13.46 6.27 -189.07 -1.19 -14.65 16 15 H 0.44 5.42 8.91 -92.71 -0.83 4.60 16 16 C 0.53 26.73 7.85 85.00 0.67 27.40 16 17 O -0.55 -33.94 17.17 -4.58 -0.08 -34.01 16 18 C -0.31 -14.29 5.32 -19.86 -0.11 -14.39 16 19 C 0.11 6.45 5.25 29.10 0.15 6.60 16 20 C -0.52 -31.35 9.09 25.60 0.23 -31.12 16 21 H 0.04 2.63 7.74 -2.91 -0.02 2.61 16 22 C 0.01 0.31 5.46 84.65 0.46 0.78 16 23 N -0.93 -57.84 13.29 21.45 0.28 -57.55 16 24 Si 0.96 46.49 29.54 68.60 2.03 48.51 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 27 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 28 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 35 H -0.02 -1.61 8.14 -2.39 -0.02 -1.63 16 36 H 0.03 1.86 7.72 -2.39 -0.02 1.84 16 37 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -98.05 328.84 2.08 -95.97 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -1.59 Total: 0.82 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.14 Total: 12.02 kcal Atomic # 7 Polarization: -118.88 SS G_CDS: -4.43 Total: -123.31 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.08 Total: -34.01 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -98.05 2.08 -95.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009060127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.920 kcal (2) G-P(sol) polarization free energy of solvation -98.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds