Wall clock time and date at job start Fri Apr 10 2020 17:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47382 * 2 1 4 4 N 1.46494 * 109.47275 * 239.98982 * 2 1 3 5 5 S 1.65608 * 119.99583 * 95.00419 * 4 2 1 6 6 O 1.42102 * 106.39826 * 178.53759 * 5 4 2 7 7 O 1.42099 * 106.40116 * 311.45886 * 5 4 2 8 8 N 1.65600 * 107.21755 * 65.00217 * 5 4 2 9 9 C 1.46495 * 120.00160 * 89.99868 * 8 5 4 10 10 C 1.46498 * 119.99764 * 269.99477 * 8 5 4 11 11 C 1.50703 * 109.46821 * 95.00390 * 10 8 5 12 12 H 1.07993 * 120.00267 * 359.97438 * 11 10 8 13 13 C 1.37882 * 119.99893 * 179.97438 * 11 10 8 14 14 N 1.31513 * 119.99936 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99903 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47340 * 89.99986 * 15 13 11 17 17 H 1.48505 * 109.46897 * 209.99902 * 15 13 11 18 18 H 1.48495 * 109.47128 * 329.99475 * 15 13 11 19 19 C 1.50699 * 109.46681 * 119.99117 * 2 1 3 20 20 C 1.38237 * 119.99828 * 79.72909 * 19 2 1 21 21 C 1.38241 * 120.00168 * 179.80913 * 20 19 2 22 22 C 1.38236 * 119.99661 * 0.39474 * 21 20 19 23 23 C 1.38234 * 120.00359 * 359.85676 * 22 21 20 24 24 C 1.38238 * 120.00359 * 259.99869 * 19 2 1 25 25 H 1.09000 * 109.46714 * 60.00354 * 1 2 3 26 26 H 1.08990 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47015 * 300.00812 * 1 2 3 28 28 H 0.96995 * 120.00292 * 275.27882 * 4 2 1 29 29 H 1.09002 * 109.47233 * 89.99817 * 9 8 5 30 30 H 1.09000 * 109.47289 * 209.99876 * 9 8 5 31 31 H 1.08998 * 109.47459 * 329.99976 * 9 8 5 32 32 H 1.08999 * 109.47161 * 214.99874 * 10 8 5 33 33 H 1.09000 * 109.47434 * 335.00819 * 10 8 5 34 34 H 0.97006 * 120.00211 * 180.02562 * 14 13 11 35 35 H 1.07997 * 120.00091 * 359.97438 * 20 19 2 36 36 H 1.07997 * 119.99867 * 180.23239 * 21 20 19 37 37 H 1.08006 * 119.99779 * 179.83661 * 22 21 20 38 38 H 1.07999 * 120.00401 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.99677 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 -1.1960 5 16 2.4123 0.1769 -2.5504 6 8 2.8778 -0.7639 -3.5082 7 8 1.3248 1.0590 -2.7922 8 7 3.7099 1.1297 -2.1620 9 6 5.0720 0.6259 -2.3536 10 6 3.4955 2.4764 -1.6268 11 6 3.5357 2.4308 -0.1210 12 1 3.7037 1.4924 0.3866 13 6 3.3581 3.5871 0.6088 14 7 3.3926 3.5472 1.9229 15 14 3.0668 5.2100 -0.2690 16 1 1.6092 5.4089 -0.4713 17 1 3.6087 6.3217 0.5532 18 1 3.7512 5.1899 -1.5867 19 6 2.0322 -0.7102 1.2306 20 6 2.0613 -2.0918 1.2678 21 6 2.5257 -2.7433 2.3951 22 6 2.9533 -2.0134 3.4883 23 6 2.9194 -0.6319 3.4532 24 6 2.4586 0.0197 2.3244 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 2.1072 -1.6567 -1.1959 29 1 5.4163 0.8813 -3.3558 30 1 5.7341 1.0787 -1.6156 31 1 5.0793 -0.4573 -2.2321 32 1 4.2788 3.1411 -1.9911 33 1 2.5237 2.8468 -1.9531 34 1 3.2673 4.3606 2.4363 35 1 1.7237 -2.6621 0.4151 36 1 2.5519 -3.8227 2.4226 37 1 3.3137 -2.5224 4.3701 38 1 3.2531 -0.0616 4.3074 39 1 2.4322 1.0990 2.2968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027931607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:35 Heat of formation + Delta-G solvation = -50.728097 kcal Electronic energy + Delta-G solvation = -23524.536374 eV Core-core repulsion = 20172.907014 eV Total energy + Delta-G solvation = -3351.629361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.05612 -36.74059 -35.78633 -35.42243 -35.26375 -32.56322 -30.69718 -30.27155 -28.54987 -28.40880 -25.19817 -23.31136 -22.28456 -21.85299 -20.38231 -18.78941 -17.57390 -17.11987 -16.77369 -16.27855 -15.64689 -14.94801 -14.70525 -14.31455 -14.03458 -13.69337 -13.30175 -13.05168 -12.95982 -12.86523 -12.59148 -12.48573 -12.24086 -11.83307 -11.77305 -11.58152 -11.44684 -11.30060 -11.26981 -11.09020 -10.75611 -10.59177 -10.52906 -10.25800 -10.21264 -9.58467 -9.09952 -8.72650 -8.44874 -8.28892 -8.10746 -6.27240 -4.27146 1.24521 1.78159 1.88495 3.21336 3.28602 3.33121 3.49888 4.12546 4.26372 4.28030 4.98374 5.02871 5.13767 5.27788 5.39052 5.48876 5.57309 5.74573 5.83301 5.92612 5.96895 6.01235 6.10995 6.19654 6.26942 6.38991 6.44710 6.48723 6.64668 6.74714 6.81040 6.86476 7.05973 7.07260 7.23585 7.25722 7.43794 7.51753 7.56643 8.31077 8.76202 9.33981 10.82812 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.008683 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.971269 B = 3223.826019 C = 4663.005979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 H 0.145 0.855 4 N -1.120 6.120 5 S 2.789 3.211 6 O -1.001 7.001 7 O -0.980 6.980 8 N -0.992 5.992 9 C 0.107 3.893 10 C 0.208 3.792 11 C -0.553 4.553 12 H 0.093 0.907 13 C 0.082 3.918 14 N -0.885 5.885 15 Si 0.867 3.133 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.264 1.264 19 C -0.077 4.077 20 C -0.120 4.120 21 C -0.133 4.133 22 C -0.130 4.130 23 C -0.119 4.119 24 C -0.088 4.088 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.404 0.596 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.267 0.733 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 -8.365 0.132 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.060 3.940 3 H 0.162 0.838 4 N -0.878 5.878 5 S 2.796 3.204 6 O -0.985 6.985 7 O -0.964 6.964 8 N -0.834 5.834 9 C -0.039 4.039 10 C 0.084 3.916 11 C -0.591 4.591 12 H 0.111 0.889 13 C -0.122 4.122 14 N -0.522 5.522 15 Si 0.694 3.306 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.079 4.079 20 C -0.138 4.138 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.137 4.137 24 C -0.107 4.107 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.237 0.763 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.645 -8.059 -0.572 8.245 hybrid contribution 0.250 0.398 0.225 0.521 sum -1.395 -7.661 -0.347 7.794 Atomic orbital electron populations 1.22262 0.95203 1.01580 1.02988 1.20336 0.93623 0.99159 0.80839 0.83759 1.56087 1.82298 1.18635 1.30820 1.01657 0.73378 0.72538 0.72802 1.93549 1.82197 1.63604 1.59180 1.93565 1.52628 1.65823 1.84376 1.57383 1.18467 1.27386 1.80133 1.21227 0.83788 0.98109 1.00807 1.19666 0.97972 0.78699 0.95227 1.21597 1.51029 0.97147 0.89362 0.88892 1.24817 0.94012 0.98677 0.94730 1.69810 1.48603 1.28916 1.04899 0.86975 0.79462 0.83856 0.80332 1.19672 1.21086 1.18895 1.19994 0.98875 0.93322 0.95671 1.20848 1.00918 0.94173 0.97875 1.20946 1.01019 0.99089 0.94038 1.21074 1.01072 0.94452 0.98233 1.21177 0.99793 0.94094 0.98619 1.21660 0.94722 1.02528 0.91754 0.91142 0.93124 0.91621 0.76320 0.93725 0.90595 0.92576 0.94488 0.93769 0.92294 0.86966 0.86939 0.86963 0.86316 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.49 37.16 0.35 -2.28 16 2 C 0.17 2.99 2.71 -69.09 -0.19 2.80 16 3 H 0.15 3.03 4.12 -51.93 -0.21 2.82 16 4 N -1.12 -18.86 5.48 -5.88 -0.03 -18.89 16 5 S 2.79 53.72 6.01 -107.50 -0.65 53.07 16 6 O -1.00 -20.17 17.21 -57.17 -0.98 -21.15 16 7 O -0.98 -21.34 15.95 -57.17 -0.91 -22.26 16 8 N -0.99 -19.48 3.23 -123.06 -0.40 -19.87 16 9 C 0.11 1.79 10.31 59.84 0.62 2.41 16 10 C 0.21 4.59 4.35 -5.19 -0.02 4.57 16 11 C -0.55 -13.27 7.46 -34.44 -0.26 -13.53 16 12 H 0.09 2.32 6.27 -52.49 -0.33 2.00 16 13 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 14 N -0.89 -22.88 13.56 55.43 0.75 -22.13 16 15 Si 0.87 19.54 27.47 -169.99 -4.67 14.87 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 19 C -0.08 -1.33 4.92 -104.62 -0.51 -1.85 16 20 C -0.12 -1.79 9.15 -39.58 -0.36 -2.15 16 21 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 22 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 23 C -0.12 -1.94 10.05 -39.58 -0.40 -2.34 16 24 C -0.09 -1.64 8.99 -39.58 -0.36 -2.00 16 25 H 0.07 1.21 7.64 -51.93 -0.40 0.81 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.40 5.78 7.10 -34.48 -0.24 5.54 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.06 0.85 7.79 -51.93 -0.40 0.45 16 32 H 0.04 0.81 7.17 -51.93 -0.37 0.43 16 33 H 0.04 1.01 6.34 -51.93 -0.33 0.69 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.11 1.45 6.83 -52.49 -0.36 1.09 16 36 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.16 3.32 7.46 -52.49 -0.39 2.93 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -28.27 328.35 -9.12 -37.40 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -5.16 Total: 10.92 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.02 Total: -16.91 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.32 Total: -60.90 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -1.90 Total: -43.41 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.67 Total: 14.87 kcal Atomic # 16 Polarization: 53.72 SS G_CDS: -0.65 Total: 53.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.27 -9.12 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027931607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.330 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds