Wall clock time and date at job start Fri Apr 10 2020 17:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36952 * 119.99748 * 2 1 4 4 H 1.08003 * 119.99858 * 193.32277 * 3 2 1 5 5 C 1.38981 * 120.00110 * 13.32478 * 3 2 1 6 6 N 1.31407 * 120.00172 * 28.91637 * 5 3 2 7 7 Si 1.86805 * 119.99693 * 208.91647 * 5 3 2 8 8 H 1.48501 * 109.47271 * 94.99927 * 7 5 3 9 9 H 1.48507 * 109.46793 * 214.99150 * 7 5 3 10 10 H 1.48496 * 109.47416 * 334.99511 * 7 5 3 11 11 C 1.34773 * 119.99831 * 179.97438 * 2 1 3 12 12 O 1.21677 * 119.99488 * 184.65960 * 11 2 1 13 13 C 1.47048 * 120.00325 * 4.66186 * 11 2 1 14 14 C 1.37969 * 119.99625 * 312.49526 * 13 11 2 15 15 N 1.34854 * 122.15258 * 179.72185 * 14 13 11 16 16 C 1.36488 * 120.39419 * 0.26314 * 15 14 13 17 17 C 1.37984 * 114.78638 * 180.02562 * 16 15 14 18 18 C 1.37695 * 118.91908 * 179.97438 * 17 16 15 19 19 C 1.39073 * 120.16693 * 359.97438 * 18 17 16 20 20 C 1.38023 * 121.21671 * 0.03625 * 19 18 17 21 21 C 1.39428 * 118.98235 * 359.97281 * 20 19 18 22 22 C 1.47413 * 123.36739 * 180.02562 * 21 20 19 23 23 O 1.21862 * 121.83894 * 359.96036 * 22 21 20 24 24 C 1.51006 * 106.92870 * 359.97438 * 17 16 15 25 25 C 1.47343 * 131.22967 * 180.25405 * 15 14 13 26 26 H 1.08999 * 109.47323 * 267.80984 * 1 2 3 27 27 H 1.08997 * 109.47388 * 27.81223 * 1 2 3 28 28 H 1.09005 * 109.46927 * 147.81561 * 1 2 3 29 29 H 0.97001 * 119.99963 * 180.02562 * 6 5 3 30 30 H 1.08000 * 118.92023 * 0.02562 * 14 13 11 31 31 H 1.08001 * 119.91757 * 179.97438 * 18 17 16 32 32 H 1.07998 * 119.39407 * 180.02562 * 19 18 17 33 33 H 1.08006 * 120.51172 * 179.97438 * 20 19 18 34 34 H 1.09005 * 110.44434 * 118.74083 * 24 17 16 35 35 H 1.09001 * 110.44654 * 241.26769 * 24 17 16 36 36 H 1.09005 * 110.24414 * 298.99538 * 25 15 14 37 37 H 1.09009 * 110.24360 * 60.98554 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1861 0.0000 4 1 3.2079 1.1987 -0.2155 5 6 1.4828 2.3735 0.2774 6 7 0.4263 2.3666 1.0588 7 14 2.0884 3.9791 -0.4606 8 1 1.3386 4.2634 -1.7105 9 1 1.8707 5.0827 0.5090 10 1 3.5372 3.8679 -0.7669 11 6 2.1388 -1.1672 0.0005 12 8 3.3526 -1.1688 0.0861 13 6 1.4073 -2.4386 -0.1024 14 6 0.3042 -2.6662 0.6945 15 7 -0.4017 -3.8135 0.6321 16 6 -0.0357 -4.8034 -0.2333 17 6 -0.8383 -5.9254 -0.2017 18 6 -0.5461 -6.9769 -1.0414 19 6 0.5417 -6.9006 -1.9045 20 6 1.3487 -5.7815 -1.9411 21 6 1.0600 -4.7123 -1.0940 22 6 1.8558 -3.4722 -1.0535 23 8 2.8281 -3.3085 -1.7697 24 6 -1.9083 -5.6716 0.8331 25 6 -1.5948 -4.2610 1.3719 26 1 -0.3634 -0.0393 1.0269 27 1 -0.3634 0.9089 -0.4795 28 1 -0.3633 -0.8698 -0.5474 29 1 -0.0393 3.1953 1.2521 30 1 -0.0069 -1.8984 1.3874 31 1 -1.1633 -7.8631 -1.0297 32 1 0.7592 -7.7324 -2.5580 33 1 2.1909 -5.7346 -2.6157 34 1 -2.8960 -5.6923 0.3724 35 1 -1.8455 -6.4079 1.6343 36 1 -1.3821 -4.3039 2.4402 37 1 -2.4316 -3.5894 1.1799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064552188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:11 Heat of formation + Delta-G solvation = 8.447349 kcal Electronic energy + Delta-G solvation = -23794.278936 eV Core-core repulsion = 20309.771664 eV Total energy + Delta-G solvation = -3484.507272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78747 -38.73924 -37.78680 -36.94296 -34.59725 -34.39484 -31.80511 -30.53446 -30.14034 -29.12837 -26.35019 -25.04753 -24.40065 -23.52557 -22.67943 -21.19242 -19.66515 -17.98286 -17.72034 -16.92984 -16.52297 -16.36031 -15.49859 -15.39522 -14.82550 -14.45023 -14.41109 -14.19614 -13.83594 -13.44222 -13.33499 -13.04293 -13.03171 -12.53718 -12.47395 -12.33298 -11.95836 -11.59452 -11.49050 -11.42511 -11.29439 -11.15353 -10.81990 -10.33233 -10.23451 -9.20971 -9.03304 -8.97080 -8.95654 -8.32543 -7.74282 -7.34209 -6.43135 -3.73957 0.79390 1.01168 1.83937 2.53748 3.04605 3.20731 3.28511 3.35603 3.86973 4.01242 4.09910 4.10953 4.25232 4.47962 4.66603 4.71623 4.83101 4.92503 5.05885 5.10828 5.13880 5.21760 5.29108 5.39539 5.43356 5.68251 5.77657 5.97952 6.03565 6.08712 6.23771 6.28463 6.55315 6.57505 6.67887 6.88204 7.00037 7.17003 7.58262 8.14002 8.29722 8.51441 9.22514 9.44181 10.06895 10.64080 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.004470 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.123323 B = 6262.497339 C = 7090.439785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.440 5.440 3 C -0.306 4.306 4 H 0.106 0.894 5 C 0.034 3.966 6 N -0.867 5.867 7 Si 0.915 3.085 8 H -0.278 1.278 9 H -0.285 1.285 10 H -0.267 1.267 11 C 0.504 3.496 12 O -0.571 6.571 13 C -0.275 4.275 14 C 0.182 3.818 15 N -0.502 5.502 16 C 0.166 3.834 17 C -0.154 4.154 18 C -0.046 4.046 19 C -0.165 4.165 20 C -0.028 4.028 21 C -0.184 4.184 22 C 0.432 3.568 23 O -0.463 6.463 24 C -0.078 4.078 25 C 0.103 3.897 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.268 0.732 30 H 0.167 0.833 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 -17.344 0.253 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.159 5.159 3 C -0.434 4.434 4 H 0.123 0.877 5 C -0.170 4.170 6 N -0.505 5.505 7 Si 0.742 3.258 8 H -0.204 1.204 9 H -0.211 1.211 10 H -0.191 1.191 11 C 0.292 3.708 12 O -0.454 6.454 13 C -0.286 4.286 14 C 0.056 3.944 15 N -0.193 5.193 16 C 0.062 3.938 17 C -0.157 4.157 18 C -0.065 4.065 19 C -0.184 4.184 20 C -0.047 4.047 21 C -0.188 4.188 22 C 0.314 3.686 23 O -0.341 6.341 24 C -0.115 4.115 25 C -0.017 4.017 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.184 0.816 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.640 -16.951 0.184 20.563 hybrid contribution -0.119 0.963 -0.094 0.975 sum -11.759 -15.988 0.090 19.846 Atomic orbital electron populations 1.21632 0.81869 1.00338 1.00168 1.43557 1.05103 1.04809 1.62401 1.19714 0.96088 0.81942 1.45628 0.87657 1.25187 0.96769 0.99526 0.95552 1.70137 1.21475 1.28700 1.30176 0.86081 0.79813 0.80916 0.79036 1.20372 1.21106 1.19093 1.17042 0.87084 0.81873 0.84787 1.90644 1.13474 1.86263 1.55056 1.22296 1.00141 1.00452 1.05685 1.21995 0.89594 0.86096 0.96730 1.43402 1.26917 1.13534 1.35429 1.18061 0.94605 0.89760 0.91377 1.19524 0.99210 0.94750 1.02237 1.20453 0.96190 0.96633 0.93176 1.21044 0.96721 0.98976 1.01658 1.21156 0.97672 0.90805 0.95047 1.20091 0.98489 0.98894 1.01344 1.19525 0.83243 0.84319 0.81473 1.90683 1.24537 1.79730 1.39114 1.21098 0.98182 0.95172 0.97093 1.22625 0.86072 0.95887 0.97148 0.93284 0.90771 0.94992 0.92220 0.81556 0.85345 0.85294 0.84318 0.88653 0.88714 0.88956 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.31 7.39 59.85 0.44 2.75 16 2 N -0.44 -11.80 3.02 -123.55 -0.37 -12.17 16 3 C -0.31 -8.85 9.31 -14.99 -0.14 -8.99 16 4 H 0.11 3.25 7.42 -52.48 -0.39 2.86 16 5 C 0.03 0.90 4.71 -17.46 -0.08 0.82 16 6 N -0.87 -22.80 11.24 55.50 0.62 -22.18 16 7 Si 0.92 20.89 29.64 -169.99 -5.04 15.86 16 8 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 9 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.50 13.71 7.01 -12.69 -0.09 13.62 16 12 O -0.57 -17.99 16.32 1.03 0.02 -17.98 16 13 C -0.27 -6.05 5.13 -102.68 -0.53 -6.58 16 14 C 0.18 3.08 8.53 -16.32 -0.14 2.94 16 15 N -0.50 -6.72 3.14 -113.57 -0.36 -7.07 16 16 C 0.17 2.35 6.33 -85.37 -0.54 1.81 16 17 C -0.15 -1.60 6.39 -104.76 -0.67 -2.27 16 18 C -0.05 -0.42 10.05 -39.47 -0.40 -0.82 16 19 C -0.16 -1.72 10.00 -39.35 -0.39 -2.11 16 20 C -0.03 -0.39 9.79 -39.22 -0.38 -0.78 16 21 C -0.18 -3.11 5.88 -105.20 -0.62 -3.73 16 22 C 0.43 9.49 7.16 -32.10 -0.23 9.26 16 23 O -0.46 -11.78 16.94 0.87 0.01 -11.77 16 24 C -0.08 -0.52 6.96 -27.09 -0.19 -0.71 16 25 C 0.10 0.82 7.73 -2.94 -0.02 0.80 16 26 H 0.05 1.04 6.99 -51.93 -0.36 0.67 16 27 H 0.07 1.74 6.62 -51.93 -0.34 1.39 16 28 H 0.03 0.61 5.99 -51.93 -0.31 0.30 16 29 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.17 2.62 6.11 -52.49 -0.32 2.30 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.14 1.89 7.97 -52.48 -0.42 1.47 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -37.42 312.07 -8.20 -45.62 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.82 Total: -1.02 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -3.98 Total: 6.01 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.11 Total: -41.42 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: 0.03 Total: -29.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.04 Total: 15.86 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.42 -8.20 -45.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064552188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.068 kcal (2) G-P(sol) polarization free energy of solvation -37.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds