Wall clock time and date at job start Fri Apr 10 2020 17:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36952 * 119.99748 * 2 1 4 4 H 1.08003 * 119.99858 * 193.32277 * 3 2 1 5 5 C 1.38981 * 120.00110 * 13.32478 * 3 2 1 6 6 N 1.31407 * 120.00172 * 28.91637 * 5 3 2 7 7 Si 1.86805 * 119.99693 * 208.91647 * 5 3 2 8 8 H 1.48501 * 109.47271 * 94.99927 * 7 5 3 9 9 H 1.48507 * 109.46793 * 214.99150 * 7 5 3 10 10 H 1.48496 * 109.47416 * 334.99511 * 7 5 3 11 11 C 1.34773 * 119.99831 * 179.97438 * 2 1 3 12 12 O 1.21677 * 119.99488 * 184.65960 * 11 2 1 13 13 C 1.47048 * 120.00325 * 4.66186 * 11 2 1 14 14 C 1.37969 * 119.99625 * 312.49526 * 13 11 2 15 15 N 1.34854 * 122.15258 * 179.72185 * 14 13 11 16 16 C 1.36488 * 120.39419 * 0.26314 * 15 14 13 17 17 C 1.37984 * 114.78638 * 180.02562 * 16 15 14 18 18 C 1.37695 * 118.91908 * 179.97438 * 17 16 15 19 19 C 1.39073 * 120.16693 * 359.97438 * 18 17 16 20 20 C 1.38023 * 121.21671 * 0.03625 * 19 18 17 21 21 C 1.39428 * 118.98235 * 359.97281 * 20 19 18 22 22 C 1.47413 * 123.36739 * 180.02562 * 21 20 19 23 23 O 1.21862 * 121.83894 * 359.96036 * 22 21 20 24 24 C 1.51006 * 106.92870 * 359.97438 * 17 16 15 25 25 C 1.47343 * 131.22967 * 180.25405 * 15 14 13 26 26 H 1.08999 * 109.47323 * 267.80984 * 1 2 3 27 27 H 1.08997 * 109.47388 * 27.81223 * 1 2 3 28 28 H 1.09005 * 109.46927 * 147.81561 * 1 2 3 29 29 H 0.97001 * 119.99963 * 180.02562 * 6 5 3 30 30 H 1.08000 * 118.92023 * 0.02562 * 14 13 11 31 31 H 1.08001 * 119.91757 * 179.97438 * 18 17 16 32 32 H 1.07998 * 119.39407 * 180.02562 * 19 18 17 33 33 H 1.08006 * 120.51172 * 179.97438 * 20 19 18 34 34 H 1.09005 * 110.44434 * 118.74083 * 24 17 16 35 35 H 1.09001 * 110.44654 * 241.26769 * 24 17 16 36 36 H 1.09005 * 110.24414 * 298.99538 * 25 15 14 37 37 H 1.09009 * 110.24360 * 60.98554 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1861 0.0000 4 1 3.2079 1.1987 -0.2155 5 6 1.4828 2.3735 0.2774 6 7 0.4263 2.3666 1.0588 7 14 2.0884 3.9791 -0.4606 8 1 1.3386 4.2634 -1.7105 9 1 1.8707 5.0827 0.5090 10 1 3.5372 3.8679 -0.7669 11 6 2.1388 -1.1672 0.0005 12 8 3.3526 -1.1688 0.0861 13 6 1.4073 -2.4386 -0.1024 14 6 0.3042 -2.6662 0.6945 15 7 -0.4017 -3.8135 0.6321 16 6 -0.0357 -4.8034 -0.2333 17 6 -0.8383 -5.9254 -0.2017 18 6 -0.5461 -6.9769 -1.0414 19 6 0.5417 -6.9006 -1.9045 20 6 1.3487 -5.7815 -1.9411 21 6 1.0600 -4.7123 -1.0940 22 6 1.8558 -3.4722 -1.0535 23 8 2.8281 -3.3085 -1.7697 24 6 -1.9083 -5.6716 0.8331 25 6 -1.5948 -4.2610 1.3719 26 1 -0.3634 -0.0393 1.0269 27 1 -0.3634 0.9089 -0.4795 28 1 -0.3633 -0.8698 -0.5474 29 1 -0.0393 3.1953 1.2521 30 1 -0.0069 -1.8984 1.3874 31 1 -1.1633 -7.8631 -1.0297 32 1 0.7592 -7.7324 -2.5580 33 1 2.1909 -5.7346 -2.6157 34 1 -2.8960 -5.6923 0.3724 35 1 -1.8455 -6.4079 1.6343 36 1 -1.3821 -4.3039 2.4402 37 1 -2.4316 -3.5894 1.1799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064552188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:11 Heat of formation + Delta-G solvation = -18.062463 kcal Electronic energy + Delta-G solvation = -23795.428488 eV Core-core repulsion = 20309.771664 eV Total energy + Delta-G solvation = -3485.656824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.87049 -40.50915 -39.32421 -38.13715 -36.65706 -35.59378 -33.76843 -31.80070 -31.28896 -30.05389 -28.25961 -26.85846 -25.51212 -24.92356 -23.68303 -22.28053 -21.23301 -19.33824 -19.07602 -18.91169 -17.92073 -17.30880 -17.04839 -16.71698 -16.34625 -16.01638 -15.83832 -15.75551 -15.27148 -15.09650 -14.64105 -14.35023 -13.97534 -13.86123 -13.56825 -13.52280 -13.35313 -13.32452 -13.11409 -12.78740 -12.65697 -12.39879 -12.30200 -12.16541 -11.89493 -11.01655 -10.86816 -10.39612 -10.17609 -9.94048 -9.81302 -8.60108 -8.49203 -5.91179 -0.33410 -0.16951 0.66350 1.31291 1.39093 1.46448 1.51716 1.74963 2.19558 2.28857 2.81266 2.84972 3.08640 3.18690 3.37373 3.41934 3.75264 3.78692 4.01557 4.15256 4.18743 4.30030 4.35290 4.49754 4.52226 4.58909 4.82982 4.85118 4.86138 5.02728 5.06015 5.11261 5.15476 5.32497 5.43469 5.46317 5.53632 5.90556 5.92701 6.03888 6.45205 6.80417 7.13138 7.39173 8.03430 8.56679 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.004470 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.123323 B = 6262.497339 C = 7090.439785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.452 5.452 3 C -0.360 4.360 4 H 0.063 0.937 5 C 0.014 3.986 6 N -0.871 5.871 7 Si 0.979 3.021 8 H -0.263 1.263 9 H -0.265 1.265 10 H -0.282 1.282 11 C 0.493 3.507 12 O -0.639 6.639 13 C -0.345 4.345 14 C 0.241 3.759 15 N -0.487 5.487 16 C 0.134 3.866 17 C -0.131 4.131 18 C -0.033 4.033 19 C -0.140 4.140 20 C -0.060 4.060 21 C -0.208 4.208 22 C 0.413 3.587 23 O -0.539 6.539 24 C -0.069 4.069 25 C 0.086 3.914 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.280 0.720 30 H 0.183 0.817 31 H 0.182 0.818 32 H 0.165 0.835 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.112 -20.240 1.646 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.169 5.169 3 C -0.487 4.487 4 H 0.081 0.919 5 C -0.190 4.190 6 N -0.507 5.507 7 Si 0.802 3.198 8 H -0.188 1.188 9 H -0.190 1.190 10 H -0.207 1.207 11 C 0.284 3.716 12 O -0.528 6.528 13 C -0.357 4.357 14 C 0.108 3.892 15 N -0.175 5.175 16 C 0.031 3.969 17 C -0.134 4.134 18 C -0.051 4.051 19 C -0.159 4.159 20 C -0.079 4.079 21 C -0.212 4.212 22 C 0.302 3.698 23 O -0.424 6.424 24 C -0.106 4.106 25 C -0.031 4.031 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.200 0.800 31 H 0.199 0.801 32 H 0.182 0.818 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.401 -19.916 1.610 26.496 hybrid contribution 1.372 1.620 -0.413 2.162 sum -16.029 -18.296 1.197 24.354 Atomic orbital electron populations 1.21638 0.79274 1.00757 1.01070 1.43762 1.06779 1.04213 1.62150 1.19504 0.95296 0.84199 1.49742 0.91892 1.25865 0.96861 1.01615 0.94704 1.70121 1.21386 1.30203 1.29037 0.85163 0.78483 0.77164 0.78952 1.18844 1.18954 1.20723 1.17863 0.86763 0.83674 0.83337 1.90548 1.16642 1.87698 1.57907 1.21722 1.04027 0.99208 1.10738 1.21862 0.86867 0.87082 0.93358 1.43928 1.27108 1.11805 1.34628 1.18426 0.94990 0.91665 0.91775 1.20174 0.98554 0.92728 1.01936 1.21068 0.95336 0.97727 0.90968 1.21508 0.95431 0.97793 1.01153 1.21240 0.99007 0.92024 0.95616 1.19928 0.99567 0.97629 1.04053 1.20175 0.82934 0.86206 0.80532 1.90609 1.27915 1.81500 1.42382 1.21340 0.98031 0.94461 0.96750 1.23318 0.84207 0.97513 0.98058 0.91999 0.92141 0.92402 0.91023 0.80043 0.80089 0.81787 0.85937 0.85259 0.85456 0.86472 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.22 7.39 127.77 0.94 6.16 16 2 N -0.45 -25.94 3.02 -663.03 -2.00 -27.95 16 3 C -0.36 -22.40 9.31 84.07 0.78 -21.61 16 4 H 0.06 4.34 7.42 -2.91 -0.02 4.32 16 5 C 0.01 0.78 4.71 84.93 0.40 1.18 16 6 N -0.87 -45.72 11.24 21.67 0.24 -45.48 16 7 Si 0.98 43.87 29.64 68.60 2.03 45.90 16 8 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 11 C 0.49 29.52 7.01 86.55 0.61 30.12 16 12 O -0.64 -45.24 16.32 -0.28 0.00 -45.25 16 13 C -0.35 -16.44 5.13 -18.60 -0.10 -16.54 16 14 C 0.24 8.09 8.53 84.17 0.72 8.81 16 15 N -0.49 -11.59 3.14 -513.22 -1.61 -13.20 16 16 C 0.13 3.48 6.33 38.69 0.24 3.72 16 17 C -0.13 -1.96 6.39 -19.96 -0.13 -2.08 16 18 C -0.03 -0.39 10.05 22.34 0.22 -0.16 16 19 C -0.14 -2.40 10.00 22.42 0.22 -2.17 16 20 C -0.06 -1.72 9.79 22.51 0.22 -1.50 16 21 C -0.21 -7.32 5.88 -20.24 -0.12 -7.43 16 22 C 0.41 20.09 7.16 27.12 0.19 20.29 16 23 O -0.54 -31.43 16.94 -0.88 -0.01 -31.44 16 24 C -0.07 -0.37 6.96 30.36 0.21 -0.16 16 25 C 0.09 0.84 7.73 86.63 0.67 1.51 16 26 H 0.06 2.59 6.99 -2.39 -0.02 2.57 16 27 H 0.06 2.87 6.62 -2.39 -0.02 2.85 16 28 H 0.06 2.26 5.99 -2.38 -0.01 2.24 16 29 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.18 5.48 6.11 -2.91 -0.02 5.47 16 31 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.12 3.75 7.97 -2.91 -0.02 3.72 16 34 H 0.13 0.03 8.14 -2.38 -0.02 0.01 16 35 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -98.21 312.07 4.86 -93.36 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.12 Total: 3.93 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 5.10 Total: 20.13 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -3.37 Total: -86.62 kcal Atomic # 8 Polarization: -76.67 SS G_CDS: -0.02 Total: -76.69 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -98.21 4.86 -93.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064552188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.293 kcal (2) G-P(sol) polarization free energy of solvation -98.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds