Wall clock time and date at job start Fri Apr 10 2020 17:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 120.00014 * 2 1 4 4 C 1.50702 * 109.47316 * 90.00449 * 3 2 1 5 5 H 1.07997 * 119.99940 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00239 * 180.27851 * 4 3 2 7 7 N 1.31519 * 120.00016 * 179.72509 * 6 4 3 8 8 Si 1.86800 * 120.00062 * 359.72012 * 6 4 3 9 9 H 1.48497 * 109.47374 * 90.00046 * 8 6 4 10 10 H 1.48504 * 109.47058 * 210.00630 * 8 6 4 11 11 H 1.48507 * 109.47025 * 330.00034 * 8 6 4 12 12 C 1.34779 * 120.00249 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00377 * 185.32694 * 12 2 1 14 14 C 1.50703 * 119.99588 * 5.32115 * 12 2 1 15 15 H 1.09002 * 110.11972 * 45.41463 * 14 12 2 16 16 C 1.55815 * 110.14726 * 283.67168 * 14 12 2 17 17 S 1.83953 * 100.69374 * 197.68784 * 16 14 12 18 18 C 1.82960 * 96.07499 * 19.88900 * 17 16 14 19 19 C 1.52997 * 112.91302 * 245.69529 * 18 17 16 20 20 C 1.53882 * 110.31420 * 119.45800 * 18 17 16 21 21 C 1.54834 * 101.03605 * 217.42774 * 20 18 17 22 22 C 1.51265 * 104.37015 * 25.36382 * 21 20 18 23 23 O 1.21281 * 124.79235 * 169.34377 * 22 21 20 24 24 N 1.34789 * 110.41193 * 349.29459 * 22 21 20 25 25 H 1.09002 * 109.47402 * 84.69199 * 1 2 3 26 26 H 1.08996 * 109.47131 * 204.69470 * 1 2 3 27 27 H 1.09003 * 109.47064 * 324.69360 * 1 2 3 28 28 H 1.09005 * 109.47445 * 330.00098 * 3 2 1 29 29 H 1.09006 * 109.47393 * 209.99930 * 3 2 1 30 30 H 0.97003 * 119.99683 * 180.02562 * 7 6 4 31 31 H 1.09002 * 111.16646 * 315.54241 * 16 14 12 32 32 H 1.08992 * 111.17387 * 79.82619 * 16 14 12 33 33 H 1.08998 * 109.47647 * 177.22835 * 19 18 17 34 34 H 1.08999 * 109.47751 * 297.23368 * 19 18 17 35 35 H 1.09007 * 109.47093 * 57.22825 * 19 18 17 36 36 H 1.08997 * 111.10739 * 335.37228 * 20 18 17 37 37 H 1.09001 * 111.10633 * 99.48739 * 20 18 17 38 38 H 1.09008 * 110.44971 * 144.08556 * 21 20 18 39 39 H 1.08997 * 110.45633 * 266.51012 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0961 2.2417 6 6 3.1215 2.8805 1.6728 7 7 3.3360 3.2629 2.9127 8 14 3.7284 3.9319 0.2530 9 1 2.6742 4.9060 -0.1276 10 1 4.9526 4.6636 0.6668 11 1 4.0410 3.0616 -0.9091 12 6 2.1389 -1.1672 -0.0005 13 8 3.3477 -1.1695 0.0970 14 6 1.3902 -2.4694 -0.1221 15 1 0.6416 -2.3993 -0.9113 16 6 0.7106 -2.8265 1.2338 17 16 0.3767 -4.6185 0.9868 18 6 1.5956 -4.8593 -0.3562 19 6 0.9446 -5.2102 -1.6956 20 6 2.6530 -5.8963 0.0615 21 6 3.9294 -5.2895 -0.5708 22 6 3.6328 -3.8094 -0.6683 23 8 4.4504 -2.9563 -0.9415 24 7 2.3312 -3.5727 -0.4098 25 1 -0.3634 0.0951 -1.0233 26 1 -0.3633 -0.9336 0.4293 27 1 -0.3633 0.8387 0.5940 28 1 1.6083 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5138 30 1 3.8090 4.0910 3.0899 31 1 1.3911 -2.6644 2.0698 32 1 -0.2157 -2.2684 1.3689 33 1 1.7141 -5.2924 -2.4632 34 1 0.4180 -6.1603 -1.6059 35 1 0.2377 -4.4278 -1.9720 36 1 2.7408 -5.9521 1.1465 37 1 2.4318 -6.8754 -0.3634 38 1 4.7925 -5.4635 0.0718 39 1 4.1016 -5.7114 -1.5609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066236920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:15 Heat of formation + Delta-G solvation = -30.267945 kcal Electronic energy + Delta-G solvation = -23182.903106 eV Core-core repulsion = 19832.160964 eV Total energy + Delta-G solvation = -3350.742142 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.79990 -38.92745 -36.85079 -35.01096 -34.07755 -32.47949 -30.46148 -29.90099 -28.34534 -26.29981 -25.52726 -24.56672 -22.45388 -21.63177 -19.78055 -18.23550 -17.49151 -16.99969 -16.70058 -16.20770 -15.83578 -15.25000 -14.83279 -14.63832 -14.50926 -13.93666 -13.77389 -13.63617 -13.33634 -13.18045 -12.79547 -12.69121 -12.46510 -12.29559 -12.20298 -12.12027 -11.83970 -11.59211 -11.38269 -11.20104 -10.92947 -10.53800 -10.50559 -10.10821 -9.69538 -9.53486 -9.13273 -8.82069 -8.59561 -7.99474 -7.76061 -6.09300 -4.08122 1.37904 1.88826 2.50625 2.71480 3.17534 3.26787 3.35488 3.41034 3.65324 4.01061 4.19001 4.39927 4.40766 4.45845 4.71323 4.79623 4.80847 5.03226 5.07442 5.18520 5.24500 5.32888 5.42679 5.47311 5.58373 5.61922 5.67705 5.74914 5.80028 5.95771 6.08083 6.60549 6.93748 7.19957 7.25341 7.59195 8.11058 8.25679 8.45021 8.85622 8.93785 9.50796 11.04063 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.004811 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.972511 B = 5818.474231 C = 6325.287586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.596 5.596 3 C 0.219 3.781 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.073 3.927 7 N -0.897 5.897 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.498 3.502 13 O -0.486 6.486 14 C 0.137 3.863 15 H 0.111 0.889 16 C -0.073 4.073 17 S -0.269 6.269 18 C 0.168 3.832 19 C -0.135 4.135 20 C -0.112 4.112 21 C -0.143 4.143 22 C 0.536 3.464 23 O -0.470 6.470 24 N -0.613 5.613 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.027 0.973 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 -19.553 -8.567 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.330 5.330 3 C 0.099 3.901 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.189 1.189 12 C 0.280 3.720 13 O -0.358 6.358 14 C 0.030 3.970 15 H 0.128 0.872 16 C -0.223 4.223 17 S -0.039 6.039 18 C -0.029 4.029 19 C -0.195 4.195 20 C -0.151 4.151 21 C -0.184 4.184 22 C 0.323 3.677 23 O -0.339 6.339 24 N -0.353 5.353 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.351 -19.481 -8.006 22.657 hybrid contribution 0.788 1.530 -0.965 1.973 sum -7.563 -17.950 -8.971 21.445 Atomic orbital electron populations 1.21873 0.81061 1.02968 1.01134 1.47759 1.06134 1.06701 1.72362 1.19677 0.92396 0.79519 0.98524 1.21282 1.37250 1.06970 0.91130 0.90780 1.24843 0.95161 0.97361 0.95569 1.69895 1.41645 1.23343 1.18654 0.86872 0.78960 0.80777 0.83316 1.20061 1.20872 1.18863 1.19806 0.88329 0.84120 0.79750 1.90898 1.12895 1.85885 1.46095 1.22157 0.90814 0.87363 0.96679 0.87166 1.25041 1.04911 0.92660 0.99670 1.87756 1.54404 1.14084 1.47692 1.24139 0.93749 0.88964 0.96034 1.22057 1.01043 1.02907 0.93531 1.22783 0.91917 0.97555 1.02878 1.22433 0.99814 0.92169 1.04012 1.20778 0.79679 0.90921 0.76364 1.90856 1.48579 1.50623 1.43807 1.49559 1.08326 1.04547 1.72898 0.93333 0.92046 0.90141 0.95463 0.94166 0.92546 0.87418 0.85518 0.91024 0.90290 0.91171 0.88512 0.88664 0.87296 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.05 59.84 0.60 1.66 16 2 N -0.60 -12.17 2.86 -182.95 -0.52 -12.69 16 3 C 0.22 5.43 4.21 -5.19 -0.02 5.41 16 4 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 5 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 8 Si 0.87 21.95 27.46 -169.99 -4.67 17.28 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.26 -6.57 6.55 56.52 0.37 -6.20 16 12 C 0.50 10.38 7.02 -10.98 -0.08 10.30 16 13 O -0.49 -12.76 13.05 -18.18 -0.24 -13.00 16 14 C 0.14 2.05 2.39 -66.84 -0.16 1.89 16 15 H 0.11 1.36 7.41 -51.93 -0.38 0.98 16 16 C -0.07 -0.95 6.51 38.66 0.25 -0.70 16 17 S -0.27 -3.00 22.24 -107.50 -2.39 -5.40 16 18 C 0.17 1.75 0.91 -66.48 -0.06 1.69 16 19 C -0.13 -1.06 9.18 37.16 0.34 -0.72 16 20 C -0.11 -0.94 6.30 -25.31 -0.16 -1.10 16 21 C -0.14 -1.44 6.82 -26.64 -0.18 -1.62 16 22 C 0.54 8.79 7.85 -10.70 -0.08 8.70 16 23 O -0.47 -10.42 15.29 -18.18 -0.28 -10.70 16 24 N -0.61 -9.03 3.12 -151.11 -0.47 -9.50 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.70 4.26 -51.93 -0.22 0.48 16 27 H 0.08 1.21 8.11 -51.93 -0.42 0.79 16 28 H 0.03 0.63 7.49 -51.93 -0.39 0.24 16 29 H 0.04 1.10 6.57 -51.93 -0.34 0.76 16 30 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 31 H 0.11 1.63 8.12 -51.93 -0.42 1.21 16 32 H 0.13 1.36 6.03 -51.93 -0.31 1.05 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.57 7.86 -51.92 -0.41 0.16 16 36 H 0.10 0.87 7.87 -51.93 -0.41 0.46 16 37 H 0.09 0.53 7.98 -51.93 -0.41 0.11 16 38 H 0.11 1.02 8.14 -51.92 -0.42 0.59 16 39 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -38.27 324.21 -8.33 -46.60 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.43 Total: -2.24 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 0.01 Total: 11.94 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.22 Total: -49.38 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.52 Total: -23.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Atomic # 16 Polarization: -3.00 SS G_CDS: -2.39 Total: -5.40 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -38.27 -8.33 -46.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066236920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.332 kcal (2) G-P(sol) polarization free energy of solvation -38.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds