Wall clock time and date at job start Fri Apr 10 2020 17:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 120.00014 * 2 1 4 4 C 1.50702 * 109.47316 * 90.00449 * 3 2 1 5 5 H 1.07997 * 119.99940 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00239 * 180.27851 * 4 3 2 7 7 N 1.31519 * 120.00016 * 179.72509 * 6 4 3 8 8 Si 1.86800 * 120.00062 * 359.72012 * 6 4 3 9 9 H 1.48497 * 109.47374 * 90.00046 * 8 6 4 10 10 H 1.48504 * 109.47058 * 210.00630 * 8 6 4 11 11 H 1.48507 * 109.47025 * 330.00034 * 8 6 4 12 12 C 1.34779 * 120.00249 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00377 * 185.32694 * 12 2 1 14 14 C 1.50703 * 119.99588 * 5.32115 * 12 2 1 15 15 H 1.09002 * 110.11972 * 45.41463 * 14 12 2 16 16 C 1.55815 * 110.14726 * 283.67168 * 14 12 2 17 17 S 1.83953 * 100.69374 * 197.68784 * 16 14 12 18 18 C 1.82960 * 96.07499 * 19.88900 * 17 16 14 19 19 C 1.52997 * 112.91302 * 245.69529 * 18 17 16 20 20 C 1.53882 * 110.31420 * 119.45800 * 18 17 16 21 21 C 1.54834 * 101.03605 * 217.42774 * 20 18 17 22 22 C 1.51265 * 104.37015 * 25.36382 * 21 20 18 23 23 O 1.21281 * 124.79235 * 169.34377 * 22 21 20 24 24 N 1.34789 * 110.41193 * 349.29459 * 22 21 20 25 25 H 1.09002 * 109.47402 * 84.69199 * 1 2 3 26 26 H 1.08996 * 109.47131 * 204.69470 * 1 2 3 27 27 H 1.09003 * 109.47064 * 324.69360 * 1 2 3 28 28 H 1.09005 * 109.47445 * 330.00098 * 3 2 1 29 29 H 1.09006 * 109.47393 * 209.99930 * 3 2 1 30 30 H 0.97003 * 119.99683 * 180.02562 * 7 6 4 31 31 H 1.09002 * 111.16646 * 315.54241 * 16 14 12 32 32 H 1.08992 * 111.17387 * 79.82619 * 16 14 12 33 33 H 1.08998 * 109.47647 * 177.22835 * 19 18 17 34 34 H 1.08999 * 109.47751 * 297.23368 * 19 18 17 35 35 H 1.09007 * 109.47093 * 57.22825 * 19 18 17 36 36 H 1.08997 * 111.10739 * 335.37228 * 20 18 17 37 37 H 1.09001 * 111.10633 * 99.48739 * 20 18 17 38 38 H 1.09008 * 110.44971 * 144.08556 * 21 20 18 39 39 H 1.08997 * 110.45633 * 266.51012 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0975 1.0961 2.2417 6 6 3.1215 2.8805 1.6728 7 7 3.3360 3.2629 2.9127 8 14 3.7284 3.9319 0.2530 9 1 2.6742 4.9060 -0.1276 10 1 4.9526 4.6636 0.6668 11 1 4.0410 3.0616 -0.9091 12 6 2.1389 -1.1672 -0.0005 13 8 3.3477 -1.1695 0.0970 14 6 1.3902 -2.4694 -0.1221 15 1 0.6416 -2.3993 -0.9113 16 6 0.7106 -2.8265 1.2338 17 16 0.3767 -4.6185 0.9868 18 6 1.5956 -4.8593 -0.3562 19 6 0.9446 -5.2102 -1.6956 20 6 2.6530 -5.8963 0.0615 21 6 3.9294 -5.2895 -0.5708 22 6 3.6328 -3.8094 -0.6683 23 8 4.4504 -2.9563 -0.9415 24 7 2.3312 -3.5727 -0.4098 25 1 -0.3634 0.0951 -1.0233 26 1 -0.3633 -0.9336 0.4293 27 1 -0.3633 0.8387 0.5940 28 1 1.6083 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5138 30 1 3.8090 4.0910 3.0899 31 1 1.3911 -2.6644 2.0698 32 1 -0.2157 -2.2684 1.3689 33 1 1.7141 -5.2924 -2.4632 34 1 0.4180 -6.1603 -1.6059 35 1 0.2377 -4.4278 -1.9720 36 1 2.7408 -5.9521 1.1465 37 1 2.4318 -6.8754 -0.3634 38 1 4.7925 -5.4635 0.0718 39 1 4.1016 -5.7114 -1.5609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066236920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:14 Heat of formation + Delta-G solvation = -58.163601 kcal Electronic energy + Delta-G solvation = -23184.112752 eV Core-core repulsion = 19832.160964 eV Total energy + Delta-G solvation = -3351.951788 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95013 -40.43693 -38.10790 -36.74879 -35.31883 -34.55357 -31.24613 -31.19960 -30.04824 -27.68396 -26.32005 -26.03240 -24.15918 -22.64056 -21.05120 -19.61873 -19.20884 -18.63279 -18.07106 -17.25274 -17.10182 -16.75415 -16.22549 -16.15025 -15.59323 -15.47620 -14.90863 -14.79395 -14.67757 -14.43605 -14.09105 -13.81702 -13.74282 -13.67887 -13.39201 -13.28852 -13.16132 -12.98560 -12.70569 -12.47081 -12.28257 -12.09777 -11.95346 -11.81319 -11.43999 -10.92262 -10.86427 -10.62131 -10.05924 -9.47880 -8.86886 -8.39083 -6.43869 0.45604 0.88871 1.25915 1.31103 1.39372 1.42413 1.51865 1.72297 2.18452 2.26526 2.94923 3.07440 3.18230 3.37862 3.60097 3.66789 3.80822 3.96073 3.98843 4.29634 4.36814 4.48643 4.55946 4.59119 4.70741 4.75614 4.79909 4.87198 4.91842 4.97301 5.03793 5.05754 5.25370 5.39893 5.51473 6.06963 6.17735 6.53173 6.57070 7.05151 7.17089 7.31542 8.77958 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.004811 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.972511 B = 5818.474231 C = 6325.287586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.603 5.603 3 C 0.228 3.772 4 C -0.534 4.534 5 H 0.030 0.970 6 C 0.012 3.988 7 N -0.944 5.944 8 Si 0.946 3.054 9 H -0.244 1.244 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.486 3.514 13 O -0.552 6.552 14 C 0.144 3.856 15 H 0.146 0.854 16 C -0.078 4.078 17 S -0.241 6.241 18 C 0.164 3.836 19 C -0.132 4.132 20 C -0.103 4.103 21 C -0.130 4.130 22 C 0.518 3.482 23 O -0.546 6.546 24 N -0.627 5.627 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.009 0.991 30 H 0.269 0.731 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 -21.814 -10.744 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.336 5.336 3 C 0.106 3.894 4 C -0.573 4.573 5 H 0.048 0.952 6 C -0.186 4.186 7 N -0.584 5.584 8 Si 0.769 3.231 9 H -0.168 1.168 10 H -0.207 1.207 11 H -0.189 1.189 12 C 0.270 3.730 13 O -0.429 6.429 14 C 0.037 3.963 15 H 0.164 0.836 16 C -0.227 4.227 17 S -0.011 6.011 18 C -0.032 4.032 19 C -0.192 4.192 20 C -0.143 4.143 21 C -0.171 4.171 22 C 0.307 3.693 23 O -0.420 6.420 24 N -0.366 5.366 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.169 0.831 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.157 0.843 38 H 0.132 0.868 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.922 -21.791 -10.175 26.413 hybrid contribution 1.500 2.151 -0.189 2.629 sum -9.422 -19.639 -10.364 24.123 Atomic orbital electron populations 1.22225 0.77190 1.04488 1.03639 1.47865 1.08571 1.05350 1.71769 1.19304 0.92325 0.82324 0.95486 1.21502 1.37071 1.06487 0.92212 0.95211 1.25824 0.95209 0.98984 0.98561 1.70045 1.42900 1.24290 1.21161 0.85739 0.79069 0.79037 0.79264 1.16764 1.20723 1.18856 1.20879 0.88034 0.86040 0.78005 1.90873 1.16015 1.87121 1.48909 1.22216 0.90805 0.84392 0.98859 0.83646 1.24943 1.04984 0.95460 0.97335 1.87678 1.53965 1.11239 1.48216 1.24623 0.93872 0.87282 0.97394 1.22114 1.01240 1.04210 0.91658 1.22894 0.89896 0.98775 1.02695 1.22495 1.00886 0.87558 1.06148 1.22056 0.79465 0.92965 0.74770 1.90808 1.50618 1.53302 1.47321 1.49770 1.08657 1.06233 1.71929 0.89698 0.88870 0.90886 0.92723 0.97300 0.92220 0.90665 0.83124 0.90258 0.87529 0.91255 0.89199 0.84308 0.86836 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.78 10.05 127.77 1.28 3.06 16 2 N -0.60 -24.95 2.86 -851.13 -2.43 -27.39 16 3 C 0.23 11.57 4.21 85.63 0.36 11.93 16 4 C -0.53 -32.38 9.94 25.60 0.25 -32.13 16 5 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 6 C 0.01 0.75 5.47 84.65 0.46 1.21 16 7 N -0.94 -61.06 13.96 21.45 0.30 -60.76 16 8 Si 0.95 46.14 27.46 68.60 1.88 48.03 16 9 H -0.24 -10.65 7.11 99.48 0.71 -9.94 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.26 -12.80 6.55 99.48 0.65 -12.15 16 12 C 0.49 20.95 7.02 87.66 0.62 21.56 16 13 O -0.55 -31.08 13.05 19.67 0.26 -30.82 16 14 C 0.14 4.19 2.39 44.96 0.11 4.30 16 15 H 0.15 3.17 7.41 -2.39 -0.02 3.15 16 16 C -0.08 -1.94 6.51 72.96 0.47 -1.46 16 17 S -0.24 -4.65 22.24 -56.49 -1.26 -5.91 16 18 C 0.16 2.88 0.91 44.94 0.04 2.92 16 19 C -0.13 -1.47 9.18 71.98 0.66 -0.81 16 20 C -0.10 -1.37 6.30 31.52 0.20 -1.17 16 21 C -0.13 -2.36 6.82 30.65 0.21 -2.15 16 22 C 0.52 17.26 7.85 87.83 0.69 17.95 16 23 O -0.55 -25.81 15.29 19.66 0.30 -25.51 16 24 N -0.63 -18.00 3.12 -750.38 -2.34 -20.35 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.87 4.26 -2.39 -0.01 1.86 16 27 H 0.07 2.10 8.11 -2.39 -0.02 2.08 16 28 H 0.05 2.47 7.49 -2.38 -0.02 2.45 16 29 H 0.01 0.51 6.57 -2.38 -0.02 0.49 16 30 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 31 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 32 H 0.15 2.90 6.03 -2.39 -0.01 2.89 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.81 7.86 -2.38 -0.02 0.80 16 36 H 0.09 1.36 7.87 -2.39 -0.02 1.34 16 37 H 0.14 0.71 7.98 -2.39 -0.02 0.69 16 38 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -93.35 324.21 3.07 -90.28 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.00 Total: 7.19 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 5.36 Total: 25.22 kcal Atomic # 7 Polarization: -104.02 SS G_CDS: -4.48 Total: -108.49 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: 0.56 Total: -56.33 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.03 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -1.26 Total: -5.91 kcal Total: -93.35 3.07 -90.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066236920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.118 kcal (2) G-P(sol) polarization free energy of solvation -93.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds