Wall clock time and date at job start Fri Apr 10 2020 17:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00381 * 2 1 4 4 C 1.50705 * 109.46746 * 269.99746 * 3 2 1 5 5 H 1.07993 * 120.00282 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99677 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99672 * 180.02562 * 6 4 3 8 8 Si 1.86795 * 120.00012 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47506 * 89.99581 * 8 6 4 10 10 H 1.48499 * 109.47341 * 209.99833 * 8 6 4 11 11 H 1.48504 * 109.47118 * 329.99741 * 8 6 4 12 12 C 1.34782 * 119.99721 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99554 * 179.97438 * 12 2 1 14 14 C 1.50694 * 120.00066 * 0.02562 * 12 2 1 15 15 H 1.08995 * 108.45376 * 56.48431 * 14 12 2 16 16 C 1.54417 * 108.65756 * 298.54014 * 14 12 2 17 17 S 1.84362 * 101.63697 * 221.13446 * 16 14 12 18 18 C 1.83561 * 93.20898 * 31.95503 * 17 16 14 19 19 C 1.53007 * 112.73943 * 84.16760 * 18 17 16 20 20 C 1.53773 * 110.26194 * 211.04226 * 18 17 16 21 21 C 1.54861 * 100.61376 * 142.55839 * 20 18 17 22 22 C 1.51131 * 104.39314 * 334.42024 * 21 20 18 23 23 O 1.21274 * 124.74144 * 188.91284 * 22 21 20 24 24 N 1.35835 * 110.52496 * 8.89228 * 22 21 20 25 25 H 1.08996 * 109.46660 * 270.00185 * 1 2 3 26 26 H 1.08997 * 109.46707 * 30.00229 * 1 2 3 27 27 H 1.09002 * 109.47062 * 150.00096 * 1 2 3 28 28 H 1.09001 * 109.46795 * 29.99461 * 3 2 1 29 29 H 1.08996 * 109.47481 * 150.00088 * 3 2 1 30 30 H 0.97003 * 119.99478 * 180.02562 * 7 6 4 31 31 H 1.08997 * 110.99231 * 339.22138 * 16 14 12 32 32 H 1.09004 * 110.99085 * 103.00658 * 16 14 12 33 33 H 1.08997 * 109.47234 * 61.00583 * 19 18 17 34 34 H 1.08997 * 109.47199 * 181.01270 * 19 18 17 35 35 H 1.09003 * 109.46927 * 301.01347 * 19 18 17 36 36 H 1.08997 * 111.19188 * 260.39769 * 20 18 17 37 37 H 1.08997 * 111.18417 * 24.67650 * 20 18 17 38 38 H 1.08999 * 110.45188 * 93.14889 * 21 20 18 39 39 H 1.09000 * 110.44785 * 215.69975 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7036 -1.4209 5 1 2.0976 1.0961 -2.2417 6 6 3.1263 2.8778 -1.6729 7 7 3.3450 3.2576 -2.9128 8 14 3.7332 3.9291 -0.2531 9 1 5.1067 3.5079 0.1229 10 1 3.7482 5.3558 -0.6646 11 1 2.8272 3.7592 0.9113 12 6 2.1389 -1.1673 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0005 15 1 0.7188 -2.4858 -0.8617 16 6 0.5325 -2.5503 1.2854 17 16 0.7665 -4.3107 1.7808 18 6 2.4704 -4.3828 1.1019 19 6 3.5200 -3.8526 2.0809 20 6 2.7865 -5.8039 0.6065 21 6 3.6247 -5.4858 -0.6562 22 6 3.1586 -4.1121 -1.0803 23 8 3.4646 -3.5692 -2.1207 24 7 2.3488 -3.5707 -0.1337 25 1 -0.3632 0.0000 1.0277 26 1 -0.3632 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5138 29 1 3.1500 1.1384 0.5138 30 1 3.8220 4.0835 -3.0900 31 1 0.9161 -1.8751 2.0503 32 1 -0.5155 -2.3400 1.0719 33 1 3.5115 -4.4592 2.9864 34 1 4.5060 -3.9031 1.6189 35 1 3.2901 -2.8178 2.3347 36 1 3.3739 -6.3555 1.3405 37 1 1.8749 -6.3433 0.3495 38 1 4.6873 -5.4695 -0.4139 39 1 3.4231 -6.2153 -1.4407 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066236921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:17 Heat of formation + Delta-G solvation = -64.787335 kcal Electronic energy + Delta-G solvation = -23253.050272 eV Core-core repulsion = 19900.811257 eV Total energy + Delta-G solvation = -3352.239015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.97163 -40.50476 -38.17352 -36.76129 -35.43865 -34.54950 -31.46913 -31.20924 -29.96493 -27.66974 -26.48863 -26.01554 -24.14373 -22.45302 -21.10759 -19.94445 -19.21752 -18.53287 -18.40797 -17.15159 -17.08484 -16.94693 -16.49488 -15.83114 -15.60802 -15.39469 -15.12710 -14.76008 -14.67936 -14.32278 -14.19996 -13.93448 -13.71708 -13.69363 -13.56574 -13.31385 -13.21036 -12.85173 -12.76677 -12.48984 -12.19515 -12.07609 -11.98409 -11.81404 -11.65470 -11.14724 -10.89466 -10.75269 -9.94191 -9.49906 -8.91182 -8.39604 -6.46209 0.51734 0.82411 1.26247 1.29491 1.32736 1.41172 1.48237 1.58605 2.25773 2.28032 2.94590 2.97296 3.21463 3.40352 3.47431 3.73105 3.76500 3.92880 4.27138 4.28487 4.29994 4.35101 4.55975 4.58495 4.60920 4.72813 4.75067 4.85559 4.89937 4.94465 4.97988 5.09460 5.16536 5.39311 5.50336 5.93362 6.16321 6.53112 6.55911 6.92194 7.12850 7.27256 8.78252 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.004990 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.175639 B = 5609.370471 C = 6110.324526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.602 5.602 3 C 0.227 3.773 4 C -0.541 4.541 5 H 0.017 0.983 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.230 1.230 12 C 0.483 3.517 13 O -0.575 6.575 14 C 0.139 3.861 15 H 0.112 0.888 16 C -0.059 4.059 17 S -0.232 6.232 18 C 0.163 3.837 19 C -0.134 4.134 20 C -0.093 4.093 21 C -0.127 4.127 22 C 0.525 3.475 23 O -0.575 6.575 24 N -0.615 5.615 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.017 0.983 30 H 0.269 0.731 31 H 0.107 0.893 32 H 0.165 0.835 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.125 0.875 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 -19.993 15.953 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.334 5.334 3 C 0.105 3.895 4 C -0.580 4.580 5 H 0.036 0.964 6 C -0.191 4.191 7 N -0.588 5.588 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.153 1.153 12 C 0.269 3.731 13 O -0.454 6.454 14 C 0.031 3.969 15 H 0.129 0.871 16 C -0.208 4.208 17 S -0.002 6.002 18 C -0.032 4.032 19 C -0.194 4.194 20 C -0.132 4.132 21 C -0.168 4.168 22 C 0.316 3.684 23 O -0.452 6.452 24 N -0.352 5.352 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.183 0.817 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.143 0.857 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.313 -20.280 15.764 26.998 hybrid contribution 1.371 2.251 -1.201 2.897 sum -6.942 -18.029 14.563 24.193 Atomic orbital electron populations 1.22216 0.77308 1.04108 1.03812 1.47938 1.08628 1.05569 1.71263 1.19337 0.92780 0.82405 0.94998 1.21568 1.37233 1.06705 0.92458 0.96413 1.25974 0.95126 0.99034 0.98957 1.70079 1.42579 1.24504 1.21632 0.85622 0.79459 0.77609 0.79636 1.20500 1.19720 1.15307 1.21515 0.88273 0.86555 0.76775 1.90656 1.16157 1.87596 1.50971 1.21216 0.90120 0.83352 1.02200 0.87074 1.24712 1.04810 0.96250 0.95012 1.88018 1.17316 1.14925 1.79913 1.24615 0.94768 0.96437 0.87346 1.22088 0.96983 1.01338 0.98999 1.22693 1.02288 0.91402 0.96771 1.22464 1.03148 0.90389 1.00756 1.22393 0.75769 0.88861 0.81393 1.90746 1.58039 1.68122 1.28332 1.49615 1.43001 1.28740 1.13832 0.88481 0.91213 0.89757 0.92230 0.96534 0.92204 0.87405 0.81706 0.86904 0.91747 0.94142 0.84703 0.87247 0.85710 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.79 8.96 127.77 1.14 2.93 16 2 N -0.60 -24.44 2.86 -851.12 -2.43 -26.87 16 3 C 0.23 11.23 4.23 85.63 0.36 11.60 16 4 C -0.54 -33.36 9.94 25.60 0.25 -33.11 16 5 H 0.02 1.24 8.06 -2.91 -0.02 1.22 16 6 C 0.01 0.42 5.47 84.66 0.46 0.88 16 7 N -0.95 -62.57 13.96 21.45 0.30 -62.27 16 8 Si 0.95 45.50 27.47 68.60 1.88 47.38 16 9 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.23 -9.57 6.54 99.48 0.65 -8.92 16 12 C 0.48 20.34 6.87 87.65 0.60 20.94 16 13 O -0.57 -30.57 15.89 -3.04 -0.05 -30.62 16 14 C 0.14 4.18 2.87 44.68 0.13 4.30 16 15 H 0.11 3.24 7.18 -2.39 -0.02 3.23 16 16 C -0.06 -1.13 5.43 72.46 0.39 -0.73 16 17 S -0.23 -4.08 22.30 -56.49 -1.26 -5.34 16 18 C 0.16 3.33 0.88 44.90 0.04 3.37 16 19 C -0.13 -2.76 9.33 71.98 0.67 -2.08 16 20 C -0.09 -1.16 6.34 31.49 0.20 -0.96 16 21 C -0.13 -2.29 6.81 30.62 0.21 -2.08 16 22 C 0.52 17.77 8.27 87.63 0.72 18.50 16 23 O -0.57 -27.28 18.03 -3.01 -0.05 -27.33 16 24 N -0.62 -18.63 2.39 -753.47 -1.80 -20.42 16 25 H 0.10 1.70 7.84 -2.39 -0.02 1.69 16 26 H 0.07 2.03 8.07 -2.39 -0.02 2.02 16 27 H 0.08 1.79 5.79 -2.39 -0.01 1.78 16 28 H 0.06 2.61 7.13 -2.39 -0.02 2.60 16 29 H 0.02 0.88 6.85 -2.39 -0.02 0.87 16 30 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 31 H 0.11 2.10 7.78 -2.39 -0.02 2.08 16 32 H 0.17 1.91 7.26 -2.39 -0.02 1.90 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.13 0.79 8.01 -2.39 -0.02 0.77 16 37 H 0.11 1.15 7.87 -2.39 -0.02 1.13 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -95.51 329.87 2.78 -92.73 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.00 Total: 9.20 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: 5.19 Total: 23.54 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -3.93 Total: -109.56 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -0.10 Total: -57.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Atomic # 16 Polarization: -4.08 SS G_CDS: -1.26 Total: -5.34 kcal Total: -95.51 2.78 -92.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066236921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.939 kcal (2) G-P(sol) polarization free energy of solvation -95.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds