Wall clock time and date at job start Fri Apr 10 2020 17:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.47008 * 2 1 4 4 C 1.37095 * 120.00055 * 263.98332 * 3 2 1 5 5 H 1.07996 * 120.00261 * 145.39568 * 4 3 2 6 6 C 1.38950 * 120.00071 * 325.40218 * 4 3 2 7 7 N 1.31409 * 120.00354 * 155.71840 * 6 4 3 8 8 Si 1.86802 * 119.99935 * 335.71094 * 6 4 3 9 9 H 1.48508 * 109.46859 * 93.44669 * 8 6 4 10 10 H 1.48500 * 109.47252 * 213.44417 * 8 6 4 11 11 H 1.48494 * 109.47245 * 333.45174 * 8 6 4 12 12 C 1.34771 * 119.99709 * 83.98903 * 3 2 1 13 13 O 1.21286 * 120.00857 * 3.77287 * 12 3 2 14 14 C 1.50710 * 119.99772 * 183.77225 * 12 3 2 15 15 H 1.09004 * 108.44608 * 308.69314 * 14 12 3 16 16 C 1.54415 * 108.65790 * 66.63393 * 14 12 3 17 17 S 1.84364 * 101.63293 * 103.32030 * 16 14 12 18 18 C 1.83572 * 93.21011 * 31.95907 * 17 16 14 19 19 C 1.52999 * 113.27535 * 83.73616 * 18 17 16 20 20 C 1.53764 * 110.25931 * 211.04234 * 18 17 16 21 21 C 1.54866 * 100.61310 * 142.55155 * 20 18 17 22 22 C 1.51120 * 104.39016 * 334.41623 * 21 20 18 23 23 O 1.21284 * 124.73415 * 188.86600 * 22 21 20 24 24 N 1.35827 * 110.53311 * 8.89422 * 22 21 20 25 25 H 1.08995 * 109.46795 * 59.99698 * 1 2 3 26 26 H 1.09000 * 109.46924 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46752 * 299.99768 * 1 2 3 28 28 H 1.09001 * 109.46752 * 240.00231 * 2 1 3 29 29 H 1.09005 * 109.47299 * 120.00257 * 2 1 3 30 30 H 0.96994 * 120.00526 * 179.97438 * 7 6 4 31 31 H 1.08996 * 110.99457 * 221.41204 * 16 14 12 32 32 H 1.09001 * 110.99284 * 345.23822 * 16 14 12 33 33 H 1.09000 * 109.47756 * 304.48027 * 19 18 17 34 34 H 1.09005 * 109.46815 * 64.47856 * 19 18 17 35 35 H 1.09000 * 109.47030 * 184.47332 * 19 18 17 36 36 H 1.08995 * 111.18872 * 24.70729 * 20 18 17 37 37 H 1.08995 * 111.22473 * 260.40597 * 20 18 17 38 38 H 1.09005 * 110.44600 * 215.68769 * 21 20 18 39 39 H 1.08999 * 110.44854 * 93.14987 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3642 1.9860 -1.1807 5 1 2.1866 3.0423 -1.3187 6 6 2.9431 1.2400 -2.2000 7 7 2.8447 1.6432 -3.4468 8 14 3.8615 -0.3363 -1.7980 9 1 2.9360 -1.4918 -1.9145 10 1 4.9897 -0.5079 -2.7481 11 1 4.3885 -0.2622 -0.4117 12 6 2.1277 2.0572 1.1608 13 8 1.8875 1.5011 2.2115 14 6 2.5486 3.5043 1.1532 15 1 3.4616 3.5949 0.5646 16 6 1.4393 4.3379 0.4756 17 16 0.6194 5.1183 1.9308 18 6 2.1778 5.1953 2.8979 19 6 3.0324 6.4214 2.5707 20 6 1.8789 5.0649 4.4005 21 6 3.0882 4.2130 4.8590 22 6 3.5062 3.4564 3.6194 23 8 4.3262 2.5631 3.5987 24 7 2.8357 3.9169 2.5316 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8935 -0.5139 0.8900 30 1 3.2492 1.1227 -4.1583 31 1 1.8663 5.0934 -0.1839 32 1 0.7446 3.6962 -0.0664 33 1 3.2352 6.4480 1.5001 34 1 2.4972 7.3254 2.8616 35 1 3.9736 6.3646 3.1175 36 1 0.9394 4.5394 4.5712 37 1 1.8761 6.0396 4.8883 38 1 2.7894 3.5200 5.6456 39 1 3.8979 4.8559 5.2041 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068916328.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:43 Heat of formation + Delta-G solvation = -54.111268 kcal Electronic energy + Delta-G solvation = -23733.319677 eV Core-core repulsion = 20381.543611 eV Total energy + Delta-G solvation = -3351.776066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86635 -40.52092 -38.08722 -37.06450 -35.18327 -34.18460 -32.01738 -31.28325 -30.40263 -27.08398 -26.42042 -25.75736 -24.30566 -22.38060 -21.36456 -20.28474 -19.06688 -18.60051 -17.90006 -17.39820 -17.09269 -16.66160 -16.33466 -15.75585 -15.58739 -15.39884 -15.06982 -14.69269 -14.60906 -14.46852 -14.27152 -14.06364 -13.88784 -13.53471 -13.44472 -13.31755 -13.18015 -12.85064 -12.76498 -12.68743 -12.11382 -11.97155 -11.91024 -11.71146 -11.34486 -11.18941 -10.93853 -10.70922 -9.95743 -9.74036 -8.87356 -8.60825 -6.16039 0.58705 0.93707 1.08686 1.24562 1.32938 1.36434 1.70832 1.74150 2.10150 2.49421 2.82551 3.13891 3.33979 3.58437 3.71107 3.82133 3.97140 3.98879 4.18958 4.31414 4.34539 4.39541 4.41981 4.48932 4.64421 4.73128 4.74679 4.79967 4.91054 4.96147 5.02818 5.14949 5.17599 5.27008 5.36772 5.93379 6.08219 6.17191 6.85366 7.01616 7.31244 7.67038 8.51754 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.006236 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.839595 B = 4489.189199 C = 4744.914077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.089 3.911 3 N -0.468 5.468 4 C -0.356 4.356 5 H 0.110 0.890 6 C 0.045 3.955 7 N -0.876 5.876 8 Si 0.908 3.092 9 H -0.255 1.255 10 H -0.280 1.280 11 H -0.289 1.289 12 C 0.464 3.536 13 O -0.602 6.602 14 C 0.153 3.847 15 H 0.093 0.907 16 C -0.042 4.042 17 S -0.279 6.279 18 C 0.172 3.828 19 C -0.133 4.133 20 C -0.099 4.099 21 C -0.125 4.125 22 C 0.531 3.469 23 O -0.575 6.575 24 N -0.616 5.616 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.282 0.718 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.144 0.856 38 H 0.117 0.883 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.530 10.952 10.728 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 N -0.190 5.190 4 C -0.483 4.483 5 H 0.128 0.872 6 C -0.161 4.161 7 N -0.511 5.511 8 Si 0.735 3.265 9 H -0.181 1.181 10 H -0.206 1.206 11 H -0.215 1.215 12 C 0.252 3.748 13 O -0.487 6.487 14 C 0.046 3.954 15 H 0.110 0.890 16 C -0.191 4.191 17 S -0.049 6.049 18 C -0.023 4.023 19 C -0.194 4.194 20 C -0.137 4.137 21 C -0.166 4.166 22 C 0.323 3.677 23 O -0.453 6.453 24 N -0.353 5.353 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.162 0.838 38 H 0.135 0.865 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.322 10.352 11.128 15.558 hybrid contribution 1.731 -1.783 -0.995 2.677 sum -1.591 8.569 10.134 13.366 Atomic orbital electron populations 1.21876 0.93789 1.02764 1.01609 1.21706 0.96725 0.84373 1.00510 1.43868 1.56980 1.12231 1.05906 1.19256 1.41908 0.97324 0.89784 0.87225 1.25600 0.96115 0.99818 0.94576 1.69794 1.40813 1.41157 0.99376 0.86493 0.79803 0.82324 0.77831 1.18066 1.20616 1.21479 1.20837 0.80709 0.89944 0.83297 1.90532 1.55412 1.70814 1.31930 1.20803 0.99875 0.92114 0.82649 0.88978 1.24442 0.96958 1.00623 0.97057 1.88065 1.17387 1.81088 1.18404 1.24795 0.90231 0.88354 0.98871 1.22155 0.99682 0.94555 1.02961 1.22679 0.98070 1.03669 0.89321 1.22447 1.00547 1.00102 0.93479 1.22177 0.78402 0.81714 0.85454 1.90656 1.35200 1.33401 1.86000 1.49668 1.51998 1.22930 1.10733 0.92209 0.89793 0.93589 0.91436 0.92873 0.90789 0.85311 0.87136 0.92236 0.87049 0.89681 0.89912 0.83843 0.86481 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 10.19 71.98 0.73 -4.75 16 2 C 0.09 4.08 4.72 86.38 0.41 4.49 16 3 N -0.47 -22.83 2.19 -635.53 -1.39 -24.22 16 4 C -0.36 -17.77 8.40 84.04 0.71 -17.06 16 5 H 0.11 5.37 5.69 -2.91 -0.02 5.36 16 6 C 0.05 2.33 5.25 84.93 0.45 2.77 16 7 N -0.88 -46.00 13.96 21.66 0.30 -45.70 16 8 Si 0.91 42.44 25.13 68.60 1.72 44.17 16 9 H -0.25 -11.08 6.55 99.48 0.65 -10.43 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 12 C 0.46 22.49 6.69 87.66 0.59 23.08 16 13 O -0.60 -32.27 15.24 -3.05 -0.05 -32.31 16 14 C 0.15 6.14 2.89 44.69 0.13 6.26 16 15 H 0.09 3.91 7.71 -2.38 -0.02 3.89 16 16 C -0.04 -1.41 5.50 72.46 0.40 -1.01 16 17 S -0.28 -8.08 22.33 -56.49 -1.26 -9.34 16 18 C 0.17 4.23 0.88 44.89 0.04 4.27 16 19 C -0.13 -2.30 9.33 71.98 0.67 -1.63 16 20 C -0.10 -1.80 6.34 31.49 0.20 -1.60 16 21 C -0.13 -2.67 6.80 30.62 0.21 -2.46 16 22 C 0.53 19.58 7.32 87.62 0.64 20.22 16 23 O -0.57 -27.58 17.96 -3.04 -0.05 -27.64 16 24 N -0.62 -21.86 2.75 -753.45 -2.07 -23.93 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 26 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 3.09 3.28 -2.39 -0.01 3.08 16 29 H 0.05 2.52 7.56 -2.38 -0.02 2.50 16 30 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 32 H 0.11 4.17 6.75 -2.39 -0.02 4.15 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.78 7.87 -2.39 -0.02 1.76 16 37 H 0.14 1.29 8.02 -2.39 -0.02 1.27 16 38 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.80 323.11 3.38 -69.42 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 1.01 Total: 16.96 kcal Atomic # 6 Polarization: 27.42 SS G_CDS: 5.17 Total: 32.59 kcal Atomic # 7 Polarization: -90.69 SS G_CDS: -3.16 Total: -93.85 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -0.10 Total: -59.95 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.72 Total: 44.17 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.26 Total: -9.34 kcal Total: -72.80 3.38 -69.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068916328.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.313 kcal (2) G-P(sol) polarization free energy of solvation -72.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds