Wall clock time and date at job start Fri Apr 10 2020 17:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47150 * 2 1 4 4 C 1.46502 * 119.99748 * 270.00278 * 3 2 1 5 5 C 1.53004 * 109.46880 * 269.99650 * 4 3 2 6 6 C 1.34774 * 120.00408 * 89.99620 * 3 2 1 7 7 O 1.21284 * 119.99911 * 0.02562 * 6 3 2 8 8 C 1.50698 * 120.00197 * 180.02562 * 6 3 2 9 9 S 1.81001 * 109.47052 * 179.97438 * 8 6 3 10 10 C 1.76202 * 99.99784 * 179.97438 * 9 8 6 11 11 N 1.32388 * 126.26021 * 359.97438 * 10 9 8 12 12 N 1.28516 * 110.20609 * 180.02562 * 11 10 9 13 13 C 1.33098 * 109.74302 * 0.02562 * 12 11 10 14 14 C 1.39776 * 126.56257 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99778 * 186.09356 * 14 13 12 16 16 C 1.40085 * 120.00068 * 6.08606 * 14 13 12 17 17 N 1.30808 * 119.99942 * 184.12744 * 16 14 13 18 18 Si 1.86799 * 119.99669 * 4.13543 * 16 14 13 19 19 H 1.48509 * 109.46950 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47355 * 299.99259 * 18 16 14 21 21 H 1.48501 * 109.47215 * 59.99928 * 18 16 14 22 22 N 1.36669 * 126.25987 * 180.30691 * 10 9 8 23 23 C 1.46505 * 127.15024 * 359.97438 * 22 10 9 24 24 H 1.08999 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47279 * 299.99930 * 1 2 3 26 26 H 1.09000 * 109.47017 * 60.00478 * 1 2 3 27 27 H 1.08994 * 109.47498 * 239.99841 * 2 1 3 28 28 H 1.09000 * 109.47735 * 119.99316 * 2 1 3 29 29 H 1.09004 * 109.47214 * 29.99267 * 4 3 2 30 30 H 1.08993 * 109.47363 * 149.99835 * 4 3 2 31 31 H 1.08999 * 109.46839 * 300.00313 * 5 4 3 32 32 H 1.09007 * 109.47121 * 59.99773 * 5 4 3 33 33 H 1.09000 * 109.47311 * 179.97438 * 5 4 3 34 34 H 1.09003 * 109.46642 * 59.99892 * 8 6 3 35 35 H 1.08993 * 109.47041 * 300.00220 * 8 6 3 36 36 H 0.97000 * 120.00392 * 354.84969 * 17 16 14 37 37 H 1.08991 * 109.47295 * 270.14314 * 23 22 10 38 38 H 1.08996 * 109.46934 * 30.14387 * 23 22 10 39 39 H 1.09000 * 109.46691 * 150.13746 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7075 1.8315 -1.7104 6 6 2.2429 2.0167 1.1671 7 8 2.0412 1.4449 2.2175 8 6 2.7447 3.4377 1.1671 9 16 2.9451 4.0068 2.8736 10 6 3.5246 5.6453 2.5835 11 7 3.7245 6.2075 1.4017 12 7 4.1504 7.4110 1.5489 13 6 4.2512 7.6969 2.8449 14 6 4.6796 8.9061 3.4000 15 1 4.8150 8.9920 4.4681 16 6 4.9333 10.0064 2.5710 17 7 5.4110 11.1126 3.0803 18 14 4.5894 9.8940 0.7384 19 1 4.9394 11.1830 0.0891 20 1 5.4061 8.8038 0.1474 21 1 3.1486 9.6064 0.5219 22 7 3.8561 6.5662 3.5374 23 6 3.8016 6.3930 4.9912 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.5816 1.6876 -2.0284 30 1 2.0955 3.1410 -1.1385 31 1 4.3882 2.2156 -0.9508 32 1 3.8745 0.7622 -1.8407 33 1 3.8890 2.3449 -2.6547 34 1 2.0263 4.0766 0.6533 35 1 3.7047 3.4840 0.6531 36 1 5.5193 11.1973 4.0405 37 1 2.8188 6.6914 5.3560 38 1 3.9790 5.3466 5.2393 39 1 4.5666 7.0122 5.4597 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075322770.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:20 Heat of formation + Delta-G solvation = 18.681558 kcal Electronic energy + Delta-G solvation = -21740.948535 eV Core-core repulsion = 18424.621755 eV Total energy + Delta-G solvation = -3316.326781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94411 -40.07967 -36.37233 -33.95398 -33.59190 -32.70576 -30.44779 -29.96589 -28.88248 -26.73606 -25.33476 -23.83756 -23.28324 -21.46307 -20.32441 -19.13376 -18.21444 -17.35303 -17.04376 -16.29475 -15.61526 -15.19083 -15.03656 -14.26162 -14.17507 -14.02265 -13.88896 -13.59728 -13.39722 -13.09018 -12.86137 -12.65079 -12.55829 -12.40396 -12.27367 -11.95380 -11.90519 -11.36885 -11.25826 -11.15804 -10.88315 -10.34695 -9.99052 -9.89999 -9.59382 -9.41756 -9.11240 -8.94924 -8.69027 -8.41821 -7.44366 -7.08091 -4.85660 1.62850 2.47089 2.55391 2.87304 2.89159 3.54829 3.57668 3.85819 4.02804 4.12370 4.29110 4.39020 4.65671 4.84436 4.86146 5.02104 5.09080 5.10942 5.17149 5.25873 5.37369 5.39666 5.47519 5.57542 5.59968 5.69266 5.74126 5.92579 5.93552 5.98323 6.32145 6.35372 6.62980 7.09217 7.11209 7.38396 7.51196 7.97024 8.03234 8.33457 8.54075 9.94339 10.08328 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.003857 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.059505 B = 7258.181349 C = 8148.463098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.611 5.611 4 C 0.100 3.900 5 C -0.173 4.173 6 C 0.536 3.464 7 O -0.525 6.525 8 C -0.134 4.134 9 S 0.028 5.972 10 C 0.053 3.947 11 N -0.274 5.274 12 N -0.416 5.416 13 C 0.345 3.655 14 C -0.492 4.492 15 H 0.083 0.917 16 C 0.064 3.936 17 N -0.808 5.808 18 Si 1.113 2.887 19 H -0.311 1.311 20 H -0.260 1.260 21 H -0.281 1.281 22 N -0.511 5.511 23 C 0.101 3.899 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.283 0.717 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 -17.649 -5.800 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.346 5.346 4 C -0.023 4.023 5 C -0.231 4.231 6 C 0.323 3.677 7 O -0.401 6.401 8 C -0.286 4.286 9 S 0.253 5.747 10 C -0.321 4.321 11 N -0.118 5.118 12 N -0.266 5.266 13 C 0.102 3.898 14 C -0.533 4.533 15 H 0.101 0.899 16 C -0.159 4.159 17 N -0.432 5.432 18 Si 0.942 3.058 19 H -0.242 1.242 20 H -0.186 1.186 21 H -0.207 1.207 22 N -0.211 5.211 23 C -0.044 4.044 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.360 -17.536 -7.054 19.943 hybrid contribution 0.148 -0.137 1.949 1.959 sum -6.212 -17.673 -5.105 19.416 Atomic orbital electron populations 1.22137 0.95829 1.02169 1.02510 1.21416 0.94418 0.82009 1.03149 1.47948 1.66337 1.14360 1.05920 1.21678 0.97187 0.98356 0.85054 1.22217 0.96492 1.02180 1.02232 1.19876 0.77053 0.87206 0.83605 1.90717 1.51420 1.67358 1.30638 1.23513 1.07290 0.96427 1.01364 1.85229 1.83438 1.00701 1.05337 1.25806 1.18221 0.98834 0.89264 1.74223 1.14740 1.03581 1.19222 1.73952 1.32250 1.07802 1.12596 1.21718 0.93174 0.87540 0.87351 1.19402 1.43801 0.93264 0.96821 0.89874 1.27360 0.88837 0.90240 1.09421 1.70671 1.29034 1.26931 1.16520 0.82692 0.79220 0.73248 0.70644 1.24157 1.18606 1.20726 1.45813 1.57190 1.12051 1.06090 1.21562 1.02519 1.02135 0.78173 0.91627 0.92045 0.92567 0.90549 0.89787 0.90070 0.89547 0.91990 0.92404 0.91033 0.86253 0.86225 0.90532 0.92048 0.91051 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.11 0.98 6.13 -4.04 -0.02 0.96 16 3 N -0.61 -6.42 2.47 -173.69 -0.43 -6.85 16 4 C 0.10 0.82 5.93 -4.04 -0.02 0.80 16 5 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 6 C 0.54 7.50 7.69 -10.99 -0.08 7.41 16 7 O -0.53 -8.91 15.44 5.55 0.09 -8.82 16 8 C -0.13 -2.01 4.26 36.00 0.15 -1.86 16 9 S 0.03 0.50 20.92 -107.50 -2.25 -1.75 16 10 C 0.05 1.19 8.09 -87.28 -0.71 0.49 16 11 N -0.27 -6.86 11.62 30.89 0.36 -6.50 16 12 N -0.42 -11.43 7.52 31.26 0.23 -11.19 16 13 C 0.35 9.21 7.27 -154.81 -1.13 8.08 16 14 C -0.49 -13.22 9.50 -38.31 -0.36 -13.58 16 15 H 0.08 2.17 7.46 -52.49 -0.39 1.78 16 16 C 0.06 1.73 5.52 -17.29 -0.10 1.63 16 17 N -0.81 -21.67 13.65 55.56 0.76 -20.91 16 18 Si 1.11 27.82 25.90 -169.99 -4.40 23.42 16 19 H -0.31 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.26 -6.68 6.76 56.52 0.38 -6.29 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 N -0.51 -11.92 3.26 -123.18 -0.40 -12.32 16 23 C 0.10 1.82 10.89 59.85 0.65 2.47 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 28 H 0.08 0.85 7.42 -51.93 -0.39 0.47 16 29 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.09 0.75 6.44 -51.93 -0.33 0.42 16 31 H 0.06 0.59 7.22 -51.93 -0.38 0.22 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.12 1.73 7.40 -51.91 -0.38 1.35 16 35 H 0.12 1.75 7.19 -51.92 -0.37 1.38 16 36 H 0.28 7.23 8.72 -40.82 -0.36 6.87 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 39 H 0.08 1.38 7.48 -51.93 -0.39 1.00 16 LS Contribution 339.68 15.07 5.12 5.12 Total: -1.00 -32.93 339.68 -7.37 -40.30 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -5.59 Total: -4.94 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.86 Total: 4.44 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.52 Total: -57.77 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 27.82 SS G_CDS: -4.40 Total: 23.42 kcal Atomic # 16 Polarization: 0.50 SS G_CDS: -2.25 Total: -1.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.93 -7.37 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322770.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.985 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds