Wall clock time and date at job start Fri Apr 10 2020 17:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.54115 * 2 1 4 4 C 1.53103 * 109.50303 * 239.89323 * 2 1 3 5 5 O 1.43020 * 109.25691 * 183.21582 * 4 2 1 6 6 C 1.43013 * 113.73498 * 58.66742 * 5 4 2 7 7 C 1.53090 * 109.26337 * 301.33010 * 6 5 4 8 8 N 1.47013 * 109.50685 * 120.11125 * 2 1 3 9 9 C 1.46899 * 111.00024 * 302.32659 * 8 2 1 10 10 N 1.46498 * 109.47003 * 302.41242 * 9 8 2 11 11 N 1.40166 * 126.14797 * 89.97510 * 10 9 8 12 12 C 1.32241 * 107.75934 * 179.97438 * 11 10 9 13 13 C 1.40119 * 125.92174 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99234 * 179.97438 * 13 12 11 15 15 C 1.40031 * 120.00162 * 359.96279 * 13 12 11 16 16 N 1.30791 * 120.00375 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99947 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47174 * 89.99530 * 17 15 13 19 19 H 1.48496 * 109.47116 * 210.00088 * 17 15 13 20 20 H 1.48503 * 109.46751 * 329.99465 * 17 15 13 21 21 N 1.38499 * 108.14612 * 0.02562 * 12 11 10 22 22 C 1.46506 * 125.83149 * 179.97438 * 21 12 11 23 23 C 1.34722 * 108.33246 * 0.22618 * 21 12 11 24 24 S 1.71198 * 125.97451 * 179.74343 * 23 21 12 25 25 H 1.09003 * 109.46976 * 299.88279 * 1 2 3 26 26 H 1.09000 * 109.47690 * 59.88925 * 1 2 3 27 27 H 1.08998 * 109.47200 * 179.89348 * 1 2 3 28 28 H 1.08994 * 109.50578 * 63.27862 * 4 2 1 29 29 H 1.08997 * 109.50798 * 303.14699 * 4 2 1 30 30 H 1.09002 * 109.50270 * 181.39579 * 6 5 4 31 31 H 1.09000 * 109.54178 * 61.29218 * 6 5 4 32 32 H 1.09001 * 109.51026 * 296.91270 * 7 6 5 33 33 H 1.09003 * 109.50733 * 176.78610 * 7 6 5 34 34 H 1.08998 * 109.46747 * 182.41291 * 9 8 2 35 35 H 1.08993 * 109.47499 * 62.41410 * 9 8 2 36 36 H 0.96998 * 120.00833 * 180.02562 * 16 15 13 37 37 H 1.08999 * 109.46892 * 90.00490 * 22 21 12 38 38 H 1.09000 * 109.46803 * 209.99664 * 22 21 12 39 39 H 1.09000 * 109.47214 * 330.00457 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7239 -1.2485 5 8 3.4694 -0.7867 -1.2058 6 6 3.9818 -1.4578 -0.0515 7 6 3.4903 -0.7414 1.2090 8 7 2.0209 -0.6952 1.1987 9 6 1.5055 -0.0645 2.4212 10 7 1.8983 1.3466 2.4457 11 7 1.1666 2.4179 1.9150 12 6 1.8543 3.5254 2.1371 13 6 1.4706 4.8202 1.7635 14 1 2.1088 5.6603 1.9946 15 6 0.2598 5.0248 1.0904 16 7 -0.5127 4.0074 0.8099 17 14 -0.2514 6.7510 0.5917 18 1 0.2682 7.0479 -0.7673 19 1 -1.7333 6.8464 0.5870 20 1 0.3046 7.7307 1.5593 21 7 3.0196 3.1833 2.8030 22 6 4.0639 4.1144 3.2376 23 6 3.0312 1.8475 2.9778 24 16 4.2668 0.9444 3.7450 25 1 -0.3633 0.5120 0.8911 26 1 -0.3634 0.5155 -0.8890 27 1 -0.3633 -1.0276 -0.0019 28 1 1.7272 -0.1795 -2.1390 29 1 1.6332 -1.7343 -1.2761 30 1 5.0714 -1.4442 -0.0765 31 1 3.6308 -2.4898 -0.0440 32 1 3.8863 0.2739 1.2284 33 1 3.8313 -1.2826 2.0916 34 1 1.9180 -0.5717 3.2933 35 1 0.4182 -0.1393 2.4380 36 1 -1.3512 4.1490 0.3434 37 1 3.8427 4.4632 4.2463 38 1 5.0284 3.6067 3.2321 39 1 4.0974 4.9658 2.5579 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794619823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:11 Heat of formation + Delta-G solvation = 44.037931 kcal Electronic energy + Delta-G solvation = -23704.468231 eV Core-core repulsion = 20389.240985 eV Total energy + Delta-G solvation = -3315.227246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07074 -39.29356 -36.16184 -34.17310 -33.62883 -32.24153 -30.68751 -28.77010 -27.07115 -26.62086 -26.05789 -23.81131 -22.44898 -21.65909 -20.88431 -19.60126 -17.78862 -16.77704 -16.33203 -16.05180 -15.78739 -15.36584 -15.20918 -14.77420 -14.56317 -14.43134 -14.07171 -13.59186 -13.21688 -12.53500 -12.32041 -12.25162 -11.87712 -11.75295 -11.59188 -11.56966 -11.53590 -11.14112 -10.83616 -10.74544 -10.62615 -10.58484 -10.37010 -10.05773 -9.59369 -9.40792 -9.19122 -8.92722 -8.39774 -7.11710 -6.84019 -6.69988 -5.20605 2.27031 2.51590 2.73200 2.86846 2.90109 3.34887 3.46128 3.59648 4.01596 4.08556 4.20937 4.77647 5.02878 5.20824 5.31478 5.38659 5.47744 5.58139 5.62081 5.78264 5.79258 5.83506 5.92468 5.95396 6.03831 6.16043 6.20845 6.24591 6.42967 6.48915 6.58232 6.69737 6.74497 6.94014 7.12670 7.22189 7.40114 7.50953 7.69634 8.16663 8.28800 9.07112 9.85689 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.006903 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.438937 B = 4055.418839 C = 5241.889306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.046 3.954 3 H 0.066 0.934 4 C 0.071 3.929 5 O -0.390 6.390 6 C 0.065 3.935 7 C 0.019 3.981 8 N -0.526 5.526 9 C 0.308 3.692 10 N -0.400 5.400 11 N -0.338 5.338 12 C 0.372 3.628 13 C -0.437 4.437 14 H 0.096 0.904 15 C 0.078 3.922 16 N -0.735 5.735 17 Si 0.927 3.073 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.259 1.259 21 N -0.515 5.515 22 C 0.100 3.900 23 C 0.465 3.535 24 S -0.713 6.713 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.285 0.715 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -2.443 -3.173 4.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.063 4.063 3 H 0.084 0.916 4 C -0.006 4.006 5 O -0.308 6.308 6 C -0.012 4.012 7 C -0.109 4.109 8 N -0.252 5.252 9 C 0.098 3.902 10 N -0.190 5.190 11 N -0.170 5.170 12 C 0.124 3.876 13 C -0.478 4.478 14 H 0.114 0.886 15 C -0.149 4.149 16 N -0.359 5.359 17 Si 0.750 3.250 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.183 1.183 21 N -0.215 5.215 22 C -0.044 4.044 23 C 0.095 3.905 24 S -0.588 6.588 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.905 -3.978 -3.399 5.311 hybrid contribution -0.130 2.324 0.006 2.327 sum -1.035 -1.655 -3.393 3.914 Atomic orbital electron populations 1.21689 0.93054 1.00783 1.03660 1.22264 0.96821 0.97552 0.89620 0.91593 1.22718 0.80785 0.99709 0.97402 1.87952 1.20833 1.78672 1.43386 1.22709 0.98816 0.95169 0.84546 1.23078 0.86738 1.01942 0.99179 1.62901 1.09913 1.50065 1.02275 1.22575 1.00678 0.72874 0.94074 1.50417 1.14390 1.09656 1.44497 1.79346 1.16308 0.89521 1.31788 1.21310 0.80471 0.95980 0.89888 1.18354 1.05240 0.89217 1.35039 0.88604 1.25801 0.95235 0.99824 0.94051 1.69849 1.09009 1.31820 1.25228 0.85979 0.78560 0.80539 0.79901 1.19083 1.19760 1.18325 1.46011 1.20400 1.05394 1.49736 1.21758 0.90194 0.92130 1.00282 1.23046 0.91214 0.85687 0.90571 1.92737 1.37503 1.64769 1.63834 0.90469 0.92370 0.93145 0.88991 0.92794 0.88800 0.92847 0.92601 0.88209 0.87199 0.87395 0.90366 0.91480 0.89220 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.89 37.16 0.33 -1.87 16 2 C 0.05 0.82 2.17 -67.60 -0.15 0.67 16 3 H 0.07 1.48 6.80 -51.93 -0.35 1.13 16 4 C 0.07 1.13 6.29 37.21 0.23 1.36 16 5 O -0.39 -6.85 10.83 -35.23 -0.38 -7.24 16 6 C 0.06 1.02 7.01 37.20 0.26 1.28 16 7 C 0.02 0.34 4.26 -3.71 -0.02 0.32 16 8 N -0.53 -9.23 4.76 -230.22 -1.09 -10.32 16 9 C 0.31 5.76 5.75 -63.32 -0.36 5.39 16 10 N -0.40 -8.78 2.81 -65.06 -0.18 -8.96 16 11 N -0.34 -8.06 9.30 31.21 0.29 -7.77 16 12 C 0.37 8.86 7.50 -155.27 -1.16 7.69 16 13 C -0.44 -9.91 8.98 -38.20 -0.34 -10.25 16 14 H 0.10 1.98 7.11 -52.48 -0.37 1.60 16 15 C 0.08 1.69 5.50 -17.32 -0.10 1.59 16 16 N -0.73 -16.82 11.90 55.55 0.66 -16.16 16 17 Si 0.93 16.23 29.56 -169.99 -5.03 11.21 16 18 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 19 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 20 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 21 N -0.51 -11.40 3.17 -124.65 -0.39 -11.79 16 22 C 0.10 1.76 10.65 59.85 0.64 2.40 16 23 C 0.46 10.63 6.63 -86.93 -0.58 10.05 16 24 S -0.71 -16.64 27.01 -107.50 -2.90 -19.54 16 25 H 0.08 1.44 6.00 -51.93 -0.31 1.13 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.22 5.92 -51.93 -0.31 0.91 16 33 H 0.10 1.82 7.65 -51.93 -0.40 1.42 16 34 H 0.11 2.04 7.62 -51.93 -0.40 1.64 16 35 H 0.11 1.91 6.40 -51.93 -0.33 1.58 16 36 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.58 7.60 -51.93 -0.39 1.18 16 39 H 0.08 1.31 7.32 -51.93 -0.38 0.93 16 LS Contribution 321.99 15.07 4.85 4.85 Total: -1.00 -27.82 321.99 -10.76 -38.58 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.34 Total: 8.48 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: -1.24 Total: 18.65 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.72 Total: -55.00 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.38 Total: -7.24 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.03 Total: 11.21 kcal Atomic # 16 Polarization: -16.64 SS G_CDS: -2.90 Total: -19.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.82 -10.76 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794619823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.622 kcal (2) G-P(sol) polarization free energy of solvation -27.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds