Wall clock time and date at job start Fri Apr 10 2020 17:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52646 * 2 1 4 4 C 1.53044 * 109.49774 * 239.92003 * 2 1 3 5 5 C 1.53038 * 109.54182 * 178.68089 * 4 2 1 6 6 C 1.52760 * 109.38086 * 61.24144 * 5 4 2 7 7 N 1.46928 * 109.00972 * 305.58965 * 6 5 4 8 8 C 1.34778 * 120.62730 * 233.58887 * 7 6 5 9 9 O 1.21355 * 119.99867 * 181.69021 * 8 7 6 10 10 C 1.49431 * 120.00311 * 1.68306 * 8 7 6 11 11 O 1.21255 * 120.00246 * 353.08671 * 10 8 7 12 12 O 1.34538 * 120.00074 * 172.80912 * 10 8 7 13 13 C 1.45198 * 116.99917 * 180.27993 * 12 10 8 14 14 C 1.50706 * 109.47138 * 180.02562 * 13 12 10 15 15 O 1.21299 * 119.99694 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00274 * 179.97438 * 14 13 12 17 17 C 1.37092 * 119.99832 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00195 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99723 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00435 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00012 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47116 * 89.99905 * 21 19 17 23 23 H 1.48503 * 109.47388 * 210.00078 * 21 19 17 24 24 H 1.48499 * 109.46998 * 329.99995 * 21 19 17 25 25 C 1.46924 * 118.73845 * 53.30641 * 7 6 5 26 26 H 1.09009 * 109.46661 * 299.91518 * 1 2 3 27 27 H 1.08994 * 109.47351 * 59.91478 * 1 2 3 28 28 H 1.08997 * 109.47404 * 179.91837 * 1 2 3 29 29 H 1.08998 * 109.46002 * 298.70681 * 4 2 1 30 30 H 1.09007 * 109.45633 * 58.66117 * 4 2 1 31 31 H 1.08995 * 109.49951 * 181.31490 * 5 4 2 32 32 H 1.08996 * 109.49785 * 301.41656 * 5 4 2 33 33 H 1.09001 * 109.50940 * 185.70994 * 6 5 4 34 34 H 1.09002 * 109.43537 * 65.42591 * 6 5 4 35 35 H 1.08995 * 109.46928 * 299.99532 * 13 12 10 36 36 H 1.08996 * 109.47391 * 60.00322 * 13 12 10 37 37 H 0.97001 * 119.99752 * 0.02562 * 16 14 13 38 38 H 0.96995 * 120.00763 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.58628 * 66.43459 * 25 7 6 40 40 H 1.09004 * 109.58700 * 186.71251 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2662 6 6 4.1055 -1.4216 -0.0334 7 7 3.5046 -0.8292 1.1694 8 6 4.2813 -0.3856 2.1777 9 8 3.7721 0.0736 3.1790 10 6 5.7693 -0.4594 2.0627 11 8 6.2772 -1.0304 1.1213 12 8 6.5457 0.1125 3.0009 13 6 7.9827 0.0069 2.8215 14 6 8.6836 0.7004 3.9612 15 8 8.0357 1.2319 4.8382 16 7 10.0303 0.7301 4.0061 17 6 10.6678 1.3614 5.0426 18 1 10.0909 1.8347 5.8234 19 6 12.0562 1.3925 5.0886 20 7 12.7582 0.8171 4.1383 21 14 12.9249 2.2522 6.5013 22 1 13.1578 1.2832 7.6022 23 1 14.2272 2.7875 6.0293 24 1 12.0804 3.3692 6.9954 25 6 2.0413 -0.7238 1.2495 26 1 -0.3633 0.5126 0.8908 27 1 -0.3634 0.5151 -0.8892 28 1 -0.3634 -1.0276 -0.0015 29 1 1.6966 -1.7572 -1.2354 30 1 1.6580 -0.2244 -2.1390 31 1 3.9333 -1.1897 -2.1672 32 1 3.9158 0.3388 -1.2542 33 1 5.1895 -1.3159 0.0098 34 1 3.8412 -2.4775 -0.0917 35 1 8.2703 -1.0443 2.8044 36 1 8.2668 0.4768 1.8800 37 1 10.5484 0.3054 3.3046 38 1 13.7273 0.8391 4.1702 39 1 1.6053 -1.7216 1.2979 40 1 1.7638 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805560689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:15 Heat of formation + Delta-G solvation = -139.546543 kcal Electronic energy + Delta-G solvation = -23958.109372 eV Core-core repulsion = 20159.875683 eV Total energy + Delta-G solvation = -3798.233688 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30762 -39.70143 -38.18277 -37.95168 -36.56484 -34.05912 -33.94090 -32.20418 -31.40808 -28.90648 -27.53613 -26.48164 -24.86066 -23.65194 -22.62534 -20.95360 -19.97459 -19.60899 -18.15426 -17.84208 -17.35817 -16.86703 -16.42438 -15.83662 -15.55328 -15.28247 -14.81481 -14.68152 -14.45172 -14.12080 -14.00986 -13.72418 -13.39157 -13.21983 -12.99651 -12.60382 -12.39891 -12.23522 -12.16047 -11.69503 -11.62684 -11.43318 -11.20270 -11.14758 -10.83587 -10.73709 -10.60923 -10.44126 -10.30908 -9.61911 -9.51053 -9.03090 -8.55530 -8.09856 -6.51318 -3.93240 1.04068 1.74289 2.88230 3.13103 3.18591 3.24043 3.31149 3.70522 4.01679 4.24128 4.34994 4.41879 4.51411 4.70792 4.87839 4.95752 5.02863 5.12102 5.16170 5.19927 5.32495 5.35211 5.38333 5.44440 5.58259 5.58531 5.63040 5.74073 5.74737 5.80189 6.00129 6.01828 6.06565 6.50259 6.82462 7.27454 7.47225 7.72317 7.92274 8.46501 9.05936 9.36807 9.86856 10.65860 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.041021 B = 0.002610 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.421544 B =10725.736837 C =11175.199807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.134 4.134 6 C 0.044 3.956 7 N -0.581 5.581 8 C 0.533 3.467 9 O -0.485 6.485 10 C 0.462 3.538 11 O -0.482 6.482 12 O -0.290 6.290 13 C 0.055 3.945 14 C 0.437 3.563 15 O -0.570 6.570 16 N -0.551 5.551 17 C -0.302 4.302 18 H 0.107 0.893 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.934 3.066 22 H -0.276 1.276 23 H -0.283 1.283 24 H -0.268 1.268 25 C 0.114 3.886 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.156 0.844 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.075 0.925 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.794 -5.924 -13.954 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.172 4.172 6 C -0.076 4.076 7 N -0.317 5.317 8 C 0.315 3.685 9 O -0.358 6.358 10 C 0.301 3.699 11 O -0.372 6.372 12 O -0.201 6.201 13 C -0.022 4.022 14 C 0.221 3.779 15 O -0.453 6.453 16 N -0.189 5.189 17 C -0.431 4.431 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.538 5.538 21 Si 0.761 3.239 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.192 1.192 25 C -0.007 4.007 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.172 0.828 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.086 -5.469 -13.051 23.759 hybrid contribution 0.913 -0.051 -0.092 0.919 sum -18.173 -5.521 -13.144 23.097 Atomic orbital electron populations 1.21760 0.94056 1.02148 1.02285 1.21525 0.96164 1.00325 0.94716 0.90499 1.21639 0.95628 1.00769 0.97428 1.21841 0.95676 1.01638 0.98077 1.23243 1.05167 0.96730 0.82505 1.47870 1.06693 1.59260 1.17829 1.18788 0.85200 0.80267 0.84279 1.90842 1.73693 1.42351 1.28918 1.23553 0.90014 0.76006 0.80306 1.90349 1.75228 1.40714 1.30944 1.86720 1.19720 1.67791 1.45881 1.23001 0.75671 1.02837 1.00703 1.19227 0.83468 0.87024 0.88177 1.90608 1.64998 1.49505 1.40207 1.41678 1.03441 1.49332 1.24437 1.19739 0.89382 1.31317 1.02637 0.87552 1.25313 0.96380 0.97497 0.98546 1.69607 1.07537 1.43638 1.33022 0.85788 0.78395 0.79494 0.80235 1.20233 1.20807 1.19238 1.21851 0.77781 1.01489 0.99589 0.92196 0.92157 0.92392 0.91668 0.91583 0.90321 0.91527 0.82807 0.91225 0.88857 0.88876 0.77145 0.91611 0.90718 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.20 37.16 0.34 -0.48 16 2 C -0.11 -0.79 2.87 -90.50 -0.26 -1.05 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -0.76 5.17 -26.69 -0.14 -0.90 16 5 C -0.13 -1.02 6.07 -26.83 -0.16 -1.18 16 6 C 0.04 0.42 6.20 -3.93 -0.02 0.39 16 7 N -0.58 -6.64 2.98 -173.54 -0.52 -7.15 16 8 C 0.53 8.05 7.76 -11.59 -0.09 7.96 16 9 O -0.49 -8.82 16.39 -7.51 -0.12 -8.95 16 10 C 0.46 7.40 7.94 35.40 0.28 7.68 16 11 O -0.48 -7.12 12.81 -19.08 -0.24 -7.36 16 12 O -0.29 -5.65 9.63 -49.07 -0.47 -6.12 16 13 C 0.06 1.02 5.95 36.01 0.21 1.24 16 14 C 0.44 10.55 7.86 -10.98 -0.09 10.47 16 15 O -0.57 -16.23 16.08 -14.12 -0.23 -16.46 16 16 N -0.55 -13.83 5.29 -10.96 -0.06 -13.88 16 17 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 18 H 0.11 3.08 7.16 -52.49 -0.38 2.70 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 21 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 C 0.11 1.05 5.71 -3.71 -0.02 1.03 16 26 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.16 1.72 3.79 -56.97 -0.22 1.51 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.01 7.01 -51.93 -0.36 0.65 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -32.62 338.85 -6.51 -39.13 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.49 Total: 5.90 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -0.19 Total: 17.26 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.15 Total: -44.18 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -1.07 Total: -38.90 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.62 -6.51 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805560689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.420 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds