Wall clock time and date at job start Fri Apr 10 2020 17:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52646 * 2 1 4 4 C 1.53044 * 109.49774 * 239.92003 * 2 1 3 5 5 C 1.53038 * 109.54182 * 178.68089 * 4 2 1 6 6 C 1.52760 * 109.38086 * 61.24144 * 5 4 2 7 7 N 1.46928 * 109.00972 * 305.58965 * 6 5 4 8 8 C 1.34778 * 120.62730 * 233.58887 * 7 6 5 9 9 O 1.21355 * 119.99867 * 181.69021 * 8 7 6 10 10 C 1.49431 * 120.00311 * 1.68306 * 8 7 6 11 11 O 1.21255 * 120.00246 * 353.08671 * 10 8 7 12 12 O 1.34538 * 120.00074 * 172.80912 * 10 8 7 13 13 C 1.45198 * 116.99917 * 180.27993 * 12 10 8 14 14 C 1.50706 * 109.47138 * 180.02562 * 13 12 10 15 15 O 1.21299 * 119.99694 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00274 * 179.97438 * 14 13 12 17 17 C 1.37092 * 119.99832 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00195 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99723 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00435 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00012 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47116 * 89.99905 * 21 19 17 23 23 H 1.48503 * 109.47388 * 210.00078 * 21 19 17 24 24 H 1.48499 * 109.46998 * 329.99995 * 21 19 17 25 25 C 1.46924 * 118.73845 * 53.30641 * 7 6 5 26 26 H 1.09009 * 109.46661 * 299.91518 * 1 2 3 27 27 H 1.08994 * 109.47351 * 59.91478 * 1 2 3 28 28 H 1.08997 * 109.47404 * 179.91837 * 1 2 3 29 29 H 1.08998 * 109.46002 * 298.70681 * 4 2 1 30 30 H 1.09007 * 109.45633 * 58.66117 * 4 2 1 31 31 H 1.08995 * 109.49951 * 181.31490 * 5 4 2 32 32 H 1.08996 * 109.49785 * 301.41656 * 5 4 2 33 33 H 1.09001 * 109.50940 * 185.70994 * 6 5 4 34 34 H 1.09002 * 109.43537 * 65.42591 * 6 5 4 35 35 H 1.08995 * 109.46928 * 299.99532 * 13 12 10 36 36 H 1.08996 * 109.47391 * 60.00322 * 13 12 10 37 37 H 0.97001 * 119.99752 * 0.02562 * 16 14 13 38 38 H 0.96995 * 120.00763 * 179.97438 * 20 19 17 39 39 H 1.08997 * 109.58628 * 66.43459 * 25 7 6 40 40 H 1.09004 * 109.58700 * 186.71251 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2662 6 6 4.1055 -1.4216 -0.0334 7 7 3.5046 -0.8292 1.1694 8 6 4.2813 -0.3856 2.1777 9 8 3.7721 0.0736 3.1790 10 6 5.7693 -0.4594 2.0627 11 8 6.2772 -1.0304 1.1213 12 8 6.5457 0.1125 3.0009 13 6 7.9827 0.0069 2.8215 14 6 8.6836 0.7004 3.9612 15 8 8.0357 1.2319 4.8382 16 7 10.0303 0.7301 4.0061 17 6 10.6678 1.3614 5.0426 18 1 10.0909 1.8347 5.8234 19 6 12.0562 1.3925 5.0886 20 7 12.7582 0.8171 4.1383 21 14 12.9249 2.2522 6.5013 22 1 13.1578 1.2832 7.6022 23 1 14.2272 2.7875 6.0293 24 1 12.0804 3.3692 6.9954 25 6 2.0413 -0.7238 1.2495 26 1 -0.3633 0.5126 0.8908 27 1 -0.3634 0.5151 -0.8892 28 1 -0.3634 -1.0276 -0.0015 29 1 1.6966 -1.7572 -1.2354 30 1 1.6580 -0.2244 -2.1390 31 1 3.9333 -1.1897 -2.1672 32 1 3.9158 0.3388 -1.2542 33 1 5.1895 -1.3159 0.0098 34 1 3.8412 -2.4775 -0.0917 35 1 8.2703 -1.0443 2.8044 36 1 8.2668 0.4768 1.8800 37 1 10.5484 0.3054 3.3046 38 1 13.7273 0.8391 4.1702 39 1 1.6053 -1.7216 1.2979 40 1 1.7638 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805560689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:15 Heat of formation + Delta-G solvation = -160.982481 kcal Electronic energy + Delta-G solvation = -23959.038904 eV Core-core repulsion = 20159.875683 eV Total energy + Delta-G solvation = -3799.163220 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.49863 -40.90492 -39.98039 -38.95434 -37.91314 -36.07493 -34.79968 -33.44695 -32.89512 -30.45983 -28.44751 -27.35027 -26.60177 -24.83415 -23.29671 -21.96360 -21.53144 -20.71778 -20.12195 -19.12531 -18.56599 -18.17184 -17.61075 -17.58097 -16.67564 -16.52465 -16.26798 -15.88386 -15.58370 -15.37496 -15.31754 -14.88338 -14.57400 -14.19588 -14.02806 -13.90156 -13.67355 -13.57361 -13.19396 -12.95864 -12.82414 -12.49160 -12.49068 -12.12805 -12.07700 -12.03160 -11.88243 -11.71502 -11.60336 -11.34216 -10.61983 -10.48480 -10.13508 -9.94479 -8.53980 -6.04433 -0.18862 0.54336 1.34814 1.42599 1.55203 1.67599 1.84599 2.07016 2.32083 2.81522 3.11377 3.25447 3.69263 3.81560 3.85405 3.92322 4.06200 4.09930 4.18770 4.28499 4.32788 4.51493 4.62225 4.69848 4.74888 4.85011 4.88329 5.04281 5.12880 5.17058 5.27260 5.34734 5.35224 5.37539 5.48369 5.83253 5.87370 6.11103 6.46374 6.58287 7.01596 7.37159 7.92006 8.62844 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.041021 B = 0.002610 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.421544 B =10725.736837 C =11175.199807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.060 0.940 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.040 3.960 7 N -0.565 5.565 8 C 0.529 3.471 9 O -0.529 6.529 10 C 0.463 3.537 11 O -0.468 6.468 12 O -0.323 6.323 13 C 0.067 3.933 14 C 0.432 3.568 15 O -0.621 6.621 16 N -0.554 5.554 17 C -0.339 4.339 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.912 5.912 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.267 1.267 24 H -0.273 1.273 25 C 0.108 3.892 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.140 0.860 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.402 0.598 38 H 0.282 0.718 39 H 0.098 0.902 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.227 -7.057 -15.945 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.079 0.921 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.080 4.080 7 N -0.299 5.299 8 C 0.311 3.689 9 O -0.406 6.406 10 C 0.303 3.697 11 O -0.357 6.357 12 O -0.235 6.235 13 C -0.010 4.010 14 C 0.219 3.781 15 O -0.508 6.508 16 N -0.191 5.191 17 C -0.468 4.468 18 H 0.099 0.901 19 C -0.207 4.207 20 N -0.552 5.552 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.192 1.192 24 H -0.198 1.198 25 C -0.013 4.013 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.156 0.844 34 H 0.110 0.890 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.237 0.763 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.513 -6.650 -15.135 25.575 hybrid contribution 0.996 0.241 0.411 1.104 sum -18.517 -6.409 -14.724 24.510 Atomic orbital electron populations 1.21735 0.92500 1.03043 1.02557 1.21505 0.97365 0.99261 0.94220 0.92120 1.21639 0.94573 1.01619 0.97205 1.21843 0.96611 1.00790 0.97683 1.23350 1.04195 0.98111 0.82316 1.48094 1.07503 1.57141 1.17189 1.18793 0.84822 0.80573 0.84722 1.90821 1.74037 1.44997 1.30743 1.23736 0.90188 0.75901 0.79903 1.90390 1.75305 1.39916 1.30082 1.86694 1.20037 1.69111 1.47685 1.22826 0.75464 1.03827 0.98854 1.20123 0.83110 0.86056 0.88852 1.90571 1.65999 1.51597 1.42607 1.41689 1.04046 1.49218 1.24170 1.19694 0.90215 1.33343 1.03568 0.90057 1.26093 0.96313 0.97529 1.00799 1.69652 1.08171 1.43502 1.33888 0.84876 0.77460 0.78316 0.77381 1.19438 1.19196 1.19786 1.22122 0.76225 1.02850 1.00069 0.92681 0.91201 0.91162 0.90213 0.90239 0.88287 0.92818 0.84395 0.89044 0.86038 0.85959 0.76286 0.90862 0.88412 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.20 71.98 0.66 -0.62 16 2 C -0.10 -1.34 2.87 -10.72 -0.03 -1.37 16 3 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -1.11 5.17 30.62 0.16 -0.95 16 5 C -0.13 -1.64 6.07 30.53 0.19 -1.45 16 6 C 0.04 0.67 6.20 86.22 0.53 1.20 16 7 N -0.57 -12.36 2.98 -821.33 -2.45 -14.80 16 8 C 0.53 16.16 7.76 87.26 0.68 16.84 16 9 O -0.53 -20.06 16.39 9.17 0.15 -19.91 16 10 C 0.46 14.78 7.94 70.84 0.56 15.34 16 11 O -0.47 -13.20 12.81 20.62 0.26 -12.94 16 12 O -0.32 -12.74 9.63 -45.85 -0.44 -13.18 16 13 C 0.07 2.45 5.95 71.24 0.42 2.87 16 14 C 0.43 21.36 7.86 87.66 0.69 22.05 16 15 O -0.62 -36.88 16.08 15.71 0.25 -36.63 16 16 N -0.55 -28.27 5.29 -306.98 -1.62 -29.89 16 17 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 18 H 0.08 4.93 7.16 -2.91 -0.02 4.91 16 19 C -0.01 -0.33 5.50 84.93 0.47 0.14 16 20 N -0.91 -47.89 13.05 21.66 0.28 -47.60 16 21 Si 1.00 42.20 29.55 68.60 2.03 44.23 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.11 1.85 5.71 86.36 0.49 2.34 16 26 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.14 2.83 3.79 -82.25 -0.31 2.52 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 37 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 38 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.68 7.01 -2.38 -0.02 1.66 16 Total: -1.00 -72.58 338.85 4.14 -68.44 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.04 Total: 24.23 kcal Atomic # 6 Polarization: 32.41 SS G_CDS: 5.64 Total: 38.05 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -3.79 Total: -92.30 kcal Atomic # 8 Polarization: -82.88 SS G_CDS: 0.23 Total: -82.65 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -72.58 4.14 -68.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805560689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.539 kcal (2) G-P(sol) polarization free energy of solvation -72.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds