Wall clock time and date at job start Fri Apr 10 2020 17:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99703 * 2 1 4 4 H 1.48497 * 109.47346 * 270.00163 * 3 2 1 5 5 H 1.48504 * 109.47469 * 30.00048 * 3 2 1 6 6 H 1.48503 * 109.47221 * 150.00065 * 3 2 1 7 7 C 1.37875 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00007 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00061 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47373 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47208 * 180.02562 * 12 11 10 14 14 O 1.20823 * 120.00080 * 359.97438 * 13 12 11 15 15 O 1.34234 * 120.00026 * 180.02562 * 13 12 11 16 16 C 1.45200 * 116.99923 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47019 * 179.97438 * 16 15 13 18 18 N 1.46509 * 109.46984 * 64.99689 * 17 16 15 19 19 C 1.34769 * 124.17490 * 270.01577 * 18 17 16 20 20 O 1.21234 * 127.15997 * 359.92431 * 19 18 17 21 21 C 1.51580 * 105.68335 * 179.74750 * 19 18 17 22 22 N 1.47318 * 103.59365 * 0.33419 * 21 19 18 23 23 C 1.33788 * 124.17736 * 89.97947 * 18 17 16 24 24 O 1.21541 * 123.76957 * 0.02748 * 23 18 17 25 25 H 0.97001 * 120.00322 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47525 * 59.99824 * 9 7 2 27 27 H 1.09002 * 109.46941 * 299.99801 * 9 7 2 28 28 H 1.09008 * 109.47390 * 60.00022 * 10 9 7 29 29 H 1.08993 * 109.47456 * 299.99971 * 10 9 7 30 30 H 1.09008 * 109.46673 * 60.00436 * 11 10 9 31 31 H 1.08993 * 109.47242 * 300.00636 * 11 10 9 32 32 H 1.09001 * 109.47384 * 60.00152 * 12 11 10 33 33 H 1.09002 * 109.47170 * 300.00395 * 12 11 10 34 34 H 1.08992 * 109.47533 * 59.99240 * 16 15 13 35 35 H 1.09002 * 109.46743 * 299.98876 * 16 15 13 36 36 H 1.08996 * 109.47286 * 305.00011 * 17 16 15 37 37 H 1.08992 * 109.47098 * 184.99581 * 17 16 15 38 38 H 1.08995 * 110.69021 * 241.76513 * 21 19 18 39 39 H 1.08998 * 110.51199 * 118.81345 * 21 19 18 40 40 H 0.97001 * 126.69459 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0001 11 6 5.5517 -2.6363 -0.0001 12 6 6.0617 -4.0787 0.0004 13 6 7.5687 -4.0787 0.0010 14 8 8.1728 -3.0323 0.0005 15 8 8.2399 -5.2411 0.0010 16 6 9.6899 -5.1650 0.0021 17 6 10.2748 -6.5789 0.0026 18 7 9.9230 -7.2533 -1.2495 19 6 8.8069 -7.9878 -1.4261 20 8 7.9383 -8.2079 -0.6095 21 6 8.8614 -8.4778 -2.8595 22 7 10.1241 -7.9160 -3.3697 23 6 10.6696 -7.2155 -2.3591 24 8 11.7230 -6.6152 -2.4444 25 1 -0.4851 0.8400 0.0004 26 1 3.8746 -0.6806 0.8905 27 1 3.8752 -0.6795 -0.8895 28 1 3.6587 -3.1501 -0.8904 29 1 3.6580 -3.1504 0.8896 30 1 5.9150 -2.1225 0.8900 31 1 5.9149 -2.1223 -0.8900 32 1 5.6985 -4.5930 -0.8894 33 1 5.6984 -4.5923 0.8906 34 1 10.0252 -4.6332 0.8925 35 1 10.0265 -4.6326 -0.8875 36 1 9.8684 -7.1399 0.8440 37 1 11.3596 -6.5233 0.0929 38 1 8.0141 -8.0965 -3.4293 39 1 8.8864 -9.5671 -2.8900 40 1 10.4886 -8.0256 -4.2619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:25 Heat of formation + Delta-G solvation = -143.899902 kcal Electronic energy + Delta-G solvation = -23550.767628 eV Core-core repulsion = 19752.345164 eV Total energy + Delta-G solvation = -3798.422464 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.74387 -40.50263 -38.94488 -37.08215 -36.51613 -35.30092 -35.08631 -32.64880 -30.95914 -30.08474 -28.13802 -26.34413 -24.40847 -23.33198 -22.45497 -20.84133 -20.50076 -20.08552 -18.52440 -17.76823 -17.66525 -17.07348 -16.82406 -16.58804 -16.25153 -15.82961 -15.67518 -14.90745 -14.61403 -14.46105 -14.24003 -14.17334 -13.73620 -13.30540 -13.18164 -12.69972 -12.45919 -12.22287 -12.16321 -11.77127 -11.44895 -11.16614 -10.87073 -10.80268 -10.67276 -10.58792 -10.54098 -10.28219 -10.00085 -9.87936 -9.68418 -9.53763 -9.14200 -8.50481 -6.01420 -3.99149 1.24302 1.69508 2.21085 2.43836 2.61141 2.67301 3.34261 3.41482 3.46915 3.53696 4.25249 4.31006 4.48945 4.49627 4.55532 4.64071 4.76653 4.92104 5.04718 5.13256 5.19537 5.28184 5.31680 5.33258 5.66160 5.94728 6.04729 6.23004 6.27979 6.34280 6.55113 6.60936 6.74934 6.94974 6.97169 7.34970 7.47666 7.62445 7.72925 7.83358 8.57117 9.03604 9.61686 11.12052 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.002464 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.461301 B =11360.330279 C =11719.234511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.111 4.111 12 C -0.111 4.111 13 C 0.461 3.539 14 O -0.506 6.506 15 O -0.355 6.355 16 C 0.045 3.955 17 C 0.124 3.876 18 N -0.578 5.578 19 C 0.521 3.479 20 O -0.449 6.449 21 C 0.061 3.939 22 N -0.729 5.729 23 C 0.701 3.299 24 O -0.545 6.545 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.230 -20.914 -4.870 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.149 4.149 12 C -0.148 4.148 13 C 0.304 3.696 14 O -0.393 6.393 15 O -0.272 6.272 16 C -0.030 4.030 17 C 0.003 3.997 18 N -0.326 5.326 19 C 0.307 3.693 20 O -0.316 6.316 21 C -0.066 4.066 22 N -0.394 5.394 23 C 0.401 3.599 24 O -0.418 6.418 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 23.372 -20.255 -4.341 31.231 hybrid contribution 0.611 0.963 -0.477 1.236 sum 23.983 -19.292 -4.818 31.154 Atomic orbital electron populations 1.69918 1.06304 1.26848 1.51387 1.25040 0.94734 0.99214 0.94603 0.86774 0.80416 0.83573 0.78521 1.20327 1.21436 1.18931 1.21172 0.89595 0.94437 1.50596 0.91031 1.19574 0.97003 0.92317 0.96346 1.21473 0.91048 1.00144 1.01297 1.21609 0.97837 0.92288 1.03134 1.21573 0.85571 1.01902 1.05759 1.24218 0.92271 0.81207 0.71905 1.90674 1.70595 1.32980 1.45083 1.86600 1.20703 1.35484 1.84445 1.23418 0.78222 0.97236 1.04120 1.21800 1.02085 0.91637 0.84166 1.46344 1.23348 1.48982 1.13878 1.20854 0.80791 0.77544 0.90108 1.90868 1.35765 1.55414 1.49583 1.22520 0.89227 1.02248 0.92654 1.45427 1.23950 1.54941 1.15061 1.15897 0.83362 0.79904 0.80708 1.91037 1.21621 1.46791 1.82384 0.92789 0.96580 0.97042 0.92618 0.92514 0.91521 0.91616 0.87879 0.87607 0.89116 0.90445 0.87306 0.86300 0.85672 0.85813 0.71390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.37 4.04 -27.89 -0.11 -0.48 16 10 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 11 C -0.11 -1.83 4.50 -26.73 -0.12 -1.95 16 12 C -0.11 -1.45 5.81 -27.89 -0.16 -1.61 16 13 C 0.46 6.43 7.96 36.00 0.29 6.71 16 14 O -0.51 -8.50 15.73 -18.75 -0.29 -8.79 16 15 O -0.35 -4.27 9.88 -39.27 -0.39 -4.66 16 16 C 0.05 0.43 5.81 37.16 0.22 0.65 16 17 C 0.12 0.89 6.11 -4.03 -0.02 0.87 16 18 N -0.58 -4.58 2.57 -120.73 -0.31 -4.90 16 19 C 0.52 3.96 8.01 -10.56 -0.08 3.88 16 20 O -0.45 -4.84 17.76 5.60 0.10 -4.74 16 21 C 0.06 0.20 7.97 -4.31 -0.03 0.17 16 22 N -0.73 -3.27 6.58 -65.74 -0.43 -3.70 16 23 C 0.70 5.86 8.62 -88.02 -0.76 5.10 16 24 O -0.54 -6.45 17.48 5.33 0.09 -6.35 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.14 8.10 -51.92 -0.42 0.72 16 31 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 32 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 0.78 8.13 -51.93 -0.42 0.35 16 35 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 36 H 0.11 0.69 8.00 -51.93 -0.42 0.27 16 37 H 0.12 0.66 7.86 -51.93 -0.41 0.25 16 38 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.44 0.97 8.96 -40.82 -0.37 0.61 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -37.90 348.52 -7.01 -44.91 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -5.76 Total: -4.72 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.36 Total: -2.34 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.03 Total: -36.15 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.49 Total: -24.55 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.90 -7.01 -44.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.994 kcal (2) G-P(sol) polarization free energy of solvation -37.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds