Wall clock time and date at job start Fri Apr 10 2020 17:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99893 * 2 1 4 4 H 1.48509 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47037 * 299.99884 * 3 2 1 6 6 H 1.48495 * 109.47119 * 60.00301 * 3 2 1 7 7 C 1.37875 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99651 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00271 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.49767 * 59.93980 * 9 7 2 11 11 C 1.53036 * 109.52912 * 299.85729 * 9 7 2 12 12 C 1.53035 * 109.54140 * 178.66772 * 11 9 7 13 13 C 1.52758 * 109.38600 * 61.23784 * 12 11 9 14 14 N 1.46927 * 109.00619 * 305.59334 * 13 12 11 15 15 C 1.34784 * 120.62801 * 233.58246 * 14 13 12 16 16 O 1.21280 * 119.99912 * 179.72167 * 15 14 13 17 17 C 1.50699 * 119.99602 * 359.71579 * 15 14 13 18 18 H 1.09005 * 108.78811 * 38.54820 * 17 15 14 19 19 C 1.52824 * 108.89329 * 280.00111 * 17 15 14 20 20 S 1.82054 * 108.25743 * 187.44781 * 19 17 15 21 21 C 1.81845 * 101.23707 * 61.38635 * 20 19 17 22 22 C 1.50151 * 109.06539 * 315.90638 * 21 20 19 23 23 O 1.21280 * 116.82570 * 200.59505 * 22 21 20 24 24 N 1.31767 * 126.34316 * 20.57453 * 22 21 20 25 25 C 1.46920 * 118.74304 * 53.30634 * 14 13 12 26 26 H 0.96998 * 119.99948 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.45879 * 298.69068 * 11 9 7 28 28 H 1.08999 * 109.45871 * 58.64378 * 11 9 7 29 29 H 1.09002 * 109.49573 * 181.31554 * 12 11 9 30 30 H 1.09005 * 109.49613 * 301.41053 * 12 11 9 31 31 H 1.08995 * 109.51370 * 185.70671 * 13 12 11 32 32 H 1.09002 * 109.43361 * 65.42368 * 13 12 11 33 33 H 1.09002 * 109.71310 * 67.74299 * 19 17 15 34 34 H 1.09001 * 109.71131 * 307.14793 * 19 17 15 35 35 H 1.09002 * 109.54191 * 75.78568 * 21 20 19 36 36 H 1.09001 * 109.54008 * 195.94691 * 21 20 19 37 37 H 0.96995 * 115.08413 * 173.50793 * 24 22 21 38 38 H 1.09001 * 109.58543 * 66.43142 * 25 14 13 39 39 H 1.09000 * 109.59149 * 186.85560 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6230 -2.5567 -0.8896 11 6 0.3739 -2.5834 1.2507 12 6 -0.4166 -3.8938 1.2344 13 6 0.5553 -5.0723 1.2445 14 7 1.5000 -4.9231 0.1292 15 6 1.6749 -5.9202 -0.7606 16 8 2.4541 -5.7828 -1.6799 17 6 0.9024 -7.2057 -0.6132 18 1 -0.1092 -6.9713 -0.2818 19 6 1.5818 -8.0725 0.4463 20 16 0.7726 -9.7033 0.4536 21 6 1.1103 -10.2740 -1.2397 22 6 0.8598 -9.1446 -2.1970 23 8 0.6632 -9.4430 -3.3560 24 7 0.8323 -7.8611 -1.9003 25 6 2.2459 -3.6640 -0.0012 26 1 -0.4850 0.8400 0.0004 27 1 1.0045 -2.5508 2.1391 28 1 -0.3186 -1.7418 1.2660 29 1 -1.0584 -3.9424 2.1140 30 1 -1.0289 -3.9381 0.3337 31 1 -0.0001 -6.0032 1.1309 32 1 1.1020 -5.0834 2.1875 33 1 1.4770 -7.6057 1.4257 34 1 2.6385 -8.1875 0.2050 35 1 2.1497 -10.5932 -1.3164 36 1 0.4536 -11.1100 -1.4804 37 1 0.7538 -7.2648 -2.6613 38 1 2.9333 -3.5579 0.8381 39 1 2.8056 -3.6660 -0.9365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824746796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:09 Heat of formation + Delta-G solvation = -64.920425 kcal Electronic energy + Delta-G solvation = -22600.890093 eV Core-core repulsion = 19248.645307 eV Total energy + Delta-G solvation = -3352.244786 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86275 -39.59174 -37.19567 -35.77151 -33.71590 -31.71905 -31.11824 -30.36817 -30.04363 -25.97273 -25.22350 -24.07236 -21.90332 -20.86593 -19.96038 -18.88365 -17.78335 -17.51518 -16.84420 -16.59809 -16.24634 -15.68892 -15.10296 -15.02462 -14.59692 -14.34614 -13.85968 -13.64245 -13.54606 -13.41252 -12.90892 -12.85011 -12.57922 -12.25981 -12.15466 -12.11237 -11.12177 -11.07682 -10.98891 -10.81065 -10.47677 -10.30742 -10.08424 -9.97234 -9.86429 -9.60294 -9.23869 -8.92794 -8.50408 -8.22818 -8.15605 -6.11599 -4.19099 1.01627 1.69271 2.32142 2.49661 2.78283 3.22989 3.26607 3.32172 3.36336 3.91470 4.14585 4.33763 4.36269 4.45662 4.67737 4.92083 4.99536 5.04135 5.18801 5.25347 5.41397 5.60875 5.89989 6.16805 6.19398 6.30102 6.34523 6.48073 6.58844 6.72368 7.00045 7.03202 7.17162 7.57418 7.63989 7.78231 7.81811 7.95432 8.17367 8.30143 8.84440 9.46750 10.94033 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.003610 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.712385 B = 7754.056734 C = 8141.125144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.101 3.899 14 N -0.591 5.591 15 C 0.499 3.501 16 O -0.534 6.534 17 C 0.124 3.876 18 H 0.112 0.888 19 C -0.096 4.096 20 S -0.220 6.220 21 C -0.105 4.105 22 C 0.527 3.473 23 O -0.546 6.546 24 N -0.691 5.691 25 C 0.116 3.884 26 H 0.261 0.739 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.410 0.590 38 H 0.060 0.940 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 -16.475 5.226 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.022 4.022 14 N -0.323 5.323 15 C 0.282 3.718 16 O -0.412 6.412 17 C 0.013 3.987 18 H 0.130 0.870 19 C -0.245 4.245 20 S 0.008 5.992 21 C -0.255 4.255 22 C 0.312 3.688 23 O -0.424 6.424 24 N -0.343 5.343 25 C -0.005 4.005 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.152 0.848 34 H 0.121 0.879 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.247 0.753 38 H 0.078 0.922 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.824 -17.160 5.229 17.958 hybrid contribution 1.007 1.837 -0.952 2.302 sum 0.183 -15.322 4.277 15.909 Atomic orbital electron populations 1.69874 1.05909 1.26527 1.50327 1.24932 0.94866 0.99156 0.94787 0.86515 0.80175 0.83576 0.77628 1.19709 1.20977 1.20982 1.21080 0.93040 0.90163 1.51189 0.92374 1.18986 0.92908 0.91112 0.94911 0.95175 1.21646 0.99511 0.95389 0.98598 1.21940 0.97640 0.96485 1.01376 1.21864 0.91521 0.99443 0.89368 1.48330 1.41561 1.15787 1.26592 1.20350 0.83638 0.84744 0.83029 1.90738 1.37105 1.81052 1.32290 1.20921 1.01543 0.91622 0.84622 0.87015 1.23715 1.03020 0.94866 1.02880 1.87290 1.74454 1.20638 1.16846 1.23635 1.08599 1.00346 0.92949 1.19195 0.76898 0.83264 0.89489 1.90832 1.49768 1.82017 1.19799 1.44631 1.72743 1.07101 1.09813 1.22121 0.95174 0.81323 1.01854 0.92929 0.94403 0.88481 0.92027 0.92210 0.90981 0.91180 0.84758 0.87851 0.85856 0.83941 0.75272 0.92175 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 11.32 55.43 0.63 -23.32 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.27 8.56 -34.44 -0.29 -13.57 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.91 2.25 -91.65 -0.21 0.70 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.32 4.96 -26.69 -0.13 -2.45 16 12 C -0.14 -2.11 6.06 -26.84 -0.16 -2.27 16 13 C 0.10 1.27 5.64 -3.93 -0.02 1.24 16 14 N -0.59 -9.23 2.98 -173.04 -0.52 -9.74 16 15 C 0.50 7.60 6.75 -10.98 -0.07 7.52 16 16 O -0.53 -10.20 15.69 5.56 0.09 -10.11 16 17 C 0.12 1.40 2.56 -70.18 -0.18 1.22 16 18 H 0.11 1.11 6.40 -51.93 -0.33 0.78 16 19 C -0.10 -0.86 5.70 37.07 0.21 -0.65 16 20 S -0.22 -1.93 22.40 -107.50 -2.41 -4.34 16 21 C -0.10 -0.94 6.61 35.74 0.24 -0.70 16 22 C 0.53 6.66 7.65 -12.57 -0.10 6.56 16 23 O -0.55 -8.86 17.60 5.56 0.10 -8.76 16 24 N -0.69 -8.73 4.64 -57.14 -0.26 -8.99 16 25 C 0.12 2.25 5.66 -3.71 -0.02 2.23 16 26 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.31 6.05 -51.93 -0.31 2.00 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.67 5.02 -51.93 -0.26 0.41 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.13 0.97 7.13 -51.93 -0.37 0.60 16 34 H 0.10 0.96 8.13 -51.93 -0.42 0.54 16 35 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.41 5.76 7.92 -40.82 -0.32 5.44 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.72 7.00 -51.93 -0.36 1.36 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -30.35 322.05 -8.69 -39.04 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.31 Total: 4.56 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.84 Total: 1.42 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.15 Total: -42.06 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.19 Total: -18.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.41 Total: -4.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.35 -8.69 -39.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.877 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds