Wall clock time and date at job start Fri Apr 10 2020 17:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 119.99893 * 2 1 4 4 H 1.48509 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47037 * 299.99884 * 3 2 1 6 6 H 1.48495 * 109.47119 * 60.00301 * 3 2 1 7 7 C 1.37875 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99651 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00271 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.49767 * 59.93980 * 9 7 2 11 11 C 1.53036 * 109.52912 * 299.85729 * 9 7 2 12 12 C 1.53035 * 109.54140 * 178.66772 * 11 9 7 13 13 C 1.52758 * 109.38600 * 61.23784 * 12 11 9 14 14 N 1.46927 * 109.00619 * 305.59334 * 13 12 11 15 15 C 1.34784 * 120.62801 * 233.58246 * 14 13 12 16 16 O 1.21280 * 119.99912 * 179.72167 * 15 14 13 17 17 C 1.50699 * 119.99602 * 359.71579 * 15 14 13 18 18 H 1.09005 * 108.78811 * 38.54820 * 17 15 14 19 19 C 1.52824 * 108.89329 * 280.00111 * 17 15 14 20 20 S 1.82054 * 108.25743 * 187.44781 * 19 17 15 21 21 C 1.81845 * 101.23707 * 61.38635 * 20 19 17 22 22 C 1.50151 * 109.06539 * 315.90638 * 21 20 19 23 23 O 1.21280 * 116.82570 * 200.59505 * 22 21 20 24 24 N 1.31767 * 126.34316 * 20.57453 * 22 21 20 25 25 C 1.46920 * 118.74304 * 53.30634 * 14 13 12 26 26 H 0.96998 * 119.99948 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.45879 * 298.69068 * 11 9 7 28 28 H 1.08999 * 109.45871 * 58.64378 * 11 9 7 29 29 H 1.09002 * 109.49573 * 181.31554 * 12 11 9 30 30 H 1.09005 * 109.49613 * 301.41053 * 12 11 9 31 31 H 1.08995 * 109.51370 * 185.70671 * 13 12 11 32 32 H 1.09002 * 109.43361 * 65.42368 * 13 12 11 33 33 H 1.09002 * 109.71310 * 67.74299 * 19 17 15 34 34 H 1.09001 * 109.71131 * 307.14793 * 19 17 15 35 35 H 1.09002 * 109.54191 * 75.78568 * 21 20 19 36 36 H 1.09001 * 109.54008 * 195.94691 * 21 20 19 37 37 H 0.96995 * 115.08413 * 173.50793 * 24 22 21 38 38 H 1.09001 * 109.58543 * 66.43142 * 25 14 13 39 39 H 1.09000 * 109.59149 * 186.85560 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6230 -2.5567 -0.8896 11 6 0.3739 -2.5834 1.2507 12 6 -0.4166 -3.8938 1.2344 13 6 0.5553 -5.0723 1.2445 14 7 1.5000 -4.9231 0.1292 15 6 1.6749 -5.9202 -0.7606 16 8 2.4541 -5.7828 -1.6799 17 6 0.9024 -7.2057 -0.6132 18 1 -0.1092 -6.9713 -0.2818 19 6 1.5818 -8.0725 0.4463 20 16 0.7726 -9.7033 0.4536 21 6 1.1103 -10.2740 -1.2397 22 6 0.8598 -9.1446 -2.1970 23 8 0.6632 -9.4430 -3.3560 24 7 0.8323 -7.8611 -1.9003 25 6 2.2459 -3.6640 -0.0012 26 1 -0.4850 0.8400 0.0004 27 1 1.0045 -2.5508 2.1391 28 1 -0.3186 -1.7418 1.2660 29 1 -1.0584 -3.9424 2.1140 30 1 -1.0289 -3.9381 0.3337 31 1 -0.0001 -6.0032 1.1309 32 1 1.1020 -5.0834 2.1875 33 1 1.4770 -7.6057 1.4257 34 1 2.6385 -8.1875 0.2050 35 1 2.1497 -10.5932 -1.3164 36 1 0.4536 -11.1100 -1.4804 37 1 0.7538 -7.2648 -2.6613 38 1 2.9333 -3.5579 0.8381 39 1 2.8056 -3.6660 -0.9365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824746796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:09 Heat of formation + Delta-G solvation = -85.768567 kcal Electronic energy + Delta-G solvation = -22601.794137 eV Core-core repulsion = 19248.645307 eV Total energy + Delta-G solvation = -3353.148829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.97076 -40.75886 -38.59803 -36.87206 -35.42601 -33.24623 -32.34893 -31.39037 -31.13677 -27.30716 -26.78989 -25.29095 -23.39394 -22.11084 -21.06734 -20.19793 -18.95899 -18.54541 -18.28998 -17.84927 -17.29865 -16.72802 -16.57579 -16.25345 -15.98210 -15.40530 -15.08888 -15.02724 -14.68333 -14.48487 -14.36152 -14.06864 -13.72348 -13.60220 -13.43209 -12.92186 -12.86747 -12.68463 -12.57280 -12.02115 -11.93176 -11.84883 -11.62171 -11.46894 -11.21305 -10.84751 -10.80256 -10.45978 -10.28234 -9.58457 -8.88546 -8.11535 -6.26043 0.32594 0.91195 1.30945 1.39263 1.42725 1.44524 1.52848 1.73094 2.16359 2.43132 3.05872 3.15971 3.23545 3.33252 3.67702 4.04439 4.06181 4.23374 4.25348 4.32709 4.37200 4.48690 4.57267 4.63460 4.82001 4.86505 4.97969 5.11896 5.25017 5.26520 5.45920 5.54499 5.62391 5.94324 6.06495 6.15476 6.34429 6.39894 6.78544 6.83784 6.99712 7.42587 8.92066 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.003610 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.712385 B = 7754.056734 C = 8141.125144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.040 3.960 10 H -0.014 1.014 11 C -0.107 4.107 12 C -0.130 4.130 13 C 0.101 3.899 14 N -0.592 5.592 15 C 0.499 3.501 16 O -0.580 6.580 17 C 0.135 3.865 18 H 0.136 0.864 19 C -0.097 4.097 20 S -0.196 6.196 21 C -0.103 4.103 22 C 0.525 3.475 23 O -0.589 6.589 24 N -0.696 5.696 25 C 0.130 3.870 26 H 0.261 0.739 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.101 0.899 35 H 0.141 0.859 36 H 0.158 0.842 37 H 0.399 0.601 38 H 0.070 0.930 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.593 -18.412 7.562 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.071 0.929 9 C 0.020 3.980 10 H 0.004 0.996 11 C -0.146 4.146 12 C -0.168 4.168 13 C -0.020 4.020 14 N -0.323 5.323 15 C 0.284 3.716 16 O -0.460 6.460 17 C 0.025 3.975 18 H 0.153 0.847 19 C -0.246 4.246 20 S 0.032 5.968 21 C -0.253 4.253 22 C 0.311 3.689 23 O -0.471 6.471 24 N -0.345 5.345 25 C 0.008 3.992 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.179 0.821 34 H 0.120 0.880 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.972 -19.117 7.619 20.602 hybrid contribution 1.039 2.471 -1.717 3.183 sum 0.067 -16.646 5.902 17.661 Atomic orbital electron populations 1.70009 1.07019 1.27079 1.51030 1.25642 0.95631 1.02135 0.94679 0.85608 0.79137 0.79957 0.77565 1.19284 1.21183 1.20205 1.21475 0.93114 0.91927 1.50978 0.92908 1.18894 0.93197 0.91574 0.94294 0.99575 1.21432 0.98799 0.97170 0.97160 1.21853 0.97913 0.94861 1.02173 1.22146 0.90799 0.99826 0.89269 1.48311 1.41783 1.14436 1.27738 1.21038 0.83058 0.85735 0.81757 1.90722 1.39191 1.82095 1.34042 1.21017 1.02067 0.89718 0.84723 0.84694 1.23795 1.02734 0.95038 1.03044 1.87302 1.74173 1.19738 1.15586 1.23668 1.10118 0.99016 0.92500 1.19864 0.75666 0.83691 0.89630 1.90811 1.51762 1.82630 1.21880 1.44791 1.72332 1.07257 1.10106 1.21623 0.94482 0.82259 1.00885 0.93011 0.93985 0.92223 0.88848 0.93723 0.86603 0.88443 0.82068 0.88023 0.84069 0.82426 0.76602 0.91159 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 11.32 21.45 0.24 -50.45 16 2 C 0.02 0.98 5.30 84.65 0.45 1.43 16 3 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -28.44 8.56 25.60 0.22 -28.22 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.04 1.86 2.25 -11.46 -0.03 1.83 16 10 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 11 C -0.11 -4.40 4.96 30.62 0.15 -4.24 16 12 C -0.13 -3.74 6.06 30.53 0.19 -3.55 16 13 C 0.10 2.14 5.64 86.22 0.49 2.62 16 14 N -0.59 -17.60 2.98 -819.75 -2.44 -20.04 16 15 C 0.50 14.62 6.75 87.66 0.59 15.21 16 16 O -0.58 -22.52 15.69 -3.03 -0.05 -22.57 16 17 C 0.14 2.68 2.56 44.54 0.11 2.80 16 18 H 0.14 2.11 6.40 -2.38 -0.02 2.09 16 19 C -0.10 -1.36 5.70 71.92 0.41 -0.95 16 20 S -0.20 -2.64 22.40 -56.49 -1.27 -3.91 16 21 C -0.10 -1.55 6.61 71.06 0.47 -1.08 16 22 C 0.53 12.60 7.65 87.95 0.67 13.27 16 23 O -0.59 -19.07 17.60 -3.03 -0.05 -19.13 16 24 N -0.70 -16.78 4.64 -454.74 -2.11 -18.89 16 25 C 0.13 5.10 5.66 86.36 0.49 5.59 16 26 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 2.90 6.05 -2.39 -0.01 2.89 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.12 1.50 5.02 -2.39 -0.01 1.49 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.16 1.42 7.13 -2.39 -0.02 1.40 16 34 H 0.10 1.54 8.13 -2.39 -0.02 1.52 16 35 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.16 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.40 11.33 7.92 -92.71 -0.73 10.60 16 38 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.05 2.38 7.00 -2.39 -0.02 2.37 16 Total: -1.00 -70.65 322.05 0.91 -69.74 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.34 Total: 16.00 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 4.21 Total: 4.71 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -4.31 Total: -89.38 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.10 Total: -41.70 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -1.27 Total: -3.91 kcal Total: -70.65 0.91 -69.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824746796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.029 kcal (2) G-P(sol) polarization free energy of solvation -70.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds