Wall clock time and date at job start Fri Apr 10 2020 17:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 110.22025 * 2 1 4 4 C 1.53005 * 109.46946 * 63.07343 * 3 2 1 5 5 C 1.50700 * 109.47105 * 180.02562 * 4 3 2 6 6 O 1.21297 * 119.99849 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99950 * 179.97438 * 5 4 3 8 8 C 1.37099 * 120.00321 * 0.02562 * 7 5 4 9 9 H 1.08004 * 119.99543 * 34.21098 * 8 7 5 10 10 C 1.38946 * 120.00118 * 214.49991 * 8 7 5 11 11 N 1.31411 * 119.99761 * 216.04279 * 10 8 7 12 12 Si 1.86801 * 120.00228 * 36.03700 * 10 8 7 13 13 H 1.48497 * 109.46802 * 92.36015 * 12 10 8 14 14 H 1.48500 * 109.47081 * 212.36077 * 12 10 8 15 15 H 1.48496 * 109.47026 * 332.36161 * 12 10 8 16 16 C 1.46504 * 120.00150 * 179.97438 * 7 5 4 17 17 C 1.50697 * 109.47432 * 272.97579 * 16 7 5 18 18 O 1.20824 * 119.99811 * 354.13846 * 17 16 7 19 19 O 1.34229 * 120.00016 * 174.14113 * 17 16 7 20 20 C 1.54485 * 110.24372 * 238.07143 * 2 1 3 21 21 C 1.54632 * 101.76685 * 215.49955 * 20 2 1 22 22 C 1.51281 * 104.19389 * 24.79633 * 21 20 2 23 23 O 1.21286 * 124.94181 * 163.78763 * 22 21 20 24 24 N 1.34419 * 110.11899 * 343.74957 * 22 21 20 25 25 H 1.09003 * 109.47079 * 59.99548 * 1 2 3 26 26 H 1.09004 * 109.47676 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47215 * 300.00219 * 1 2 3 28 28 H 1.08995 * 109.46986 * 303.07389 * 3 2 1 29 29 H 1.09005 * 109.47293 * 183.07020 * 3 2 1 30 30 H 1.09003 * 109.47003 * 59.99928 * 4 3 2 31 31 H 1.09005 * 109.46861 * 299.99942 * 4 3 2 32 32 H 0.97001 * 120.00180 * 179.97438 * 11 10 8 33 33 H 1.09003 * 109.46626 * 32.97751 * 16 7 5 34 34 H 1.08999 * 109.47123 * 152.97002 * 16 7 5 35 35 H 0.96698 * 116.99617 * 179.97438 * 19 17 16 36 36 H 1.08998 * 110.96885 * 333.61641 * 20 2 1 37 37 H 1.09005 * 110.97059 * 97.38144 * 20 2 1 38 38 H 1.09000 * 110.48991 * 143.47765 * 21 20 2 39 39 H 1.09005 * 110.48316 * 265.98774 * 21 20 2 40 40 H 0.96999 * 124.35413 * 179.61864 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 6 1.6220 2.1400 1.2862 5 6 2.1423 3.5543 1.2859 6 8 2.7983 3.9590 0.3494 7 7 1.8787 4.3695 2.3263 8 6 1.1376 3.9120 3.3851 9 1 1.2192 2.8808 3.6957 10 6 0.2772 4.7733 4.0547 11 7 0.1196 4.6650 5.3548 12 14 -0.6553 6.0854 3.1069 13 1 -1.9818 5.5548 2.7021 14 1 -0.8420 7.2801 3.9689 15 1 0.1168 6.4643 1.8963 16 6 2.3850 5.7443 2.3263 17 6 3.7767 5.7671 2.9038 18 8 4.2522 4.7608 3.3739 19 8 4.4880 6.9054 2.8959 20 6 2.0645 -0.7665 -1.2301 21 6 3.3299 -1.4436 -0.6544 22 6 3.0547 -1.5429 0.8298 23 8 3.6621 -2.2531 1.6029 24 7 2.0396 -0.7290 1.1674 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6580 1.9704 -0.8611 29 1 3.1473 1.4220 -0.0550 30 1 2.0227 1.6052 2.1473 31 1 0.5334 2.1537 1.3412 32 1 -0.4808 5.2665 5.8224 33 1 2.4093 6.1224 1.3043 34 1 1.7305 6.3725 2.9306 35 1 5.3757 6.8709 3.2778 36 1 1.3440 -1.5108 -1.5693 37 1 2.3221 -0.0795 -2.0362 38 1 3.4612 -2.4361 -1.0854 39 1 4.2101 -0.8282 -0.8409 40 1 1.6892 -0.6352 2.0670 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833564475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:24 Heat of formation + Delta-G solvation = -157.634976 kcal Electronic energy + Delta-G solvation = -25143.294730 eV Core-core repulsion = 21344.276668 eV Total energy + Delta-G solvation = -3799.018062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61034 -39.80786 -38.55202 -37.07323 -35.58822 -34.88231 -32.62500 -32.16914 -31.31015 -29.81662 -28.09311 -25.46096 -24.81389 -23.35089 -21.37628 -20.71294 -19.93186 -19.06020 -17.59184 -17.21565 -16.90324 -16.49322 -15.97825 -15.61879 -15.26105 -15.03875 -14.89439 -14.41877 -14.26144 -13.84274 -13.57181 -13.37163 -13.04932 -12.72711 -12.59782 -12.45982 -12.31488 -12.00046 -11.97533 -11.62144 -11.43390 -11.08909 -11.04181 -10.96429 -10.81933 -10.61681 -10.31725 -10.20330 -9.89282 -9.75536 -9.35401 -8.99971 -8.75619 -8.07271 -6.74671 -4.16385 2.72190 2.85980 2.98702 3.10442 3.11808 3.30224 3.46199 3.73550 3.95759 4.21654 4.38327 4.45144 4.68394 4.77703 5.00312 5.07508 5.31364 5.51951 5.58019 5.62546 5.69715 5.72064 5.75531 5.84367 5.88629 5.92161 5.96828 6.07613 6.13190 6.33765 6.47880 6.59826 6.95303 7.02834 7.04470 7.18026 7.84198 8.09533 8.38096 8.52320 8.77213 9.15361 9.49211 10.35684 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.004854 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.853080 B = 5767.041124 C = 6373.663747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 C -0.107 4.107 4 C -0.116 4.116 5 C 0.486 3.514 6 O -0.598 6.598 7 N -0.442 5.442 8 C -0.360 4.360 9 H 0.105 0.895 10 C 0.075 3.925 11 N -0.824 5.824 12 Si 0.844 3.156 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.255 1.255 16 C 0.122 3.878 17 C 0.461 3.539 18 O -0.497 6.497 19 O -0.528 6.528 20 C -0.122 4.122 21 C -0.157 4.157 22 C 0.519 3.481 23 O -0.544 6.544 24 N -0.717 5.717 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.277 0.723 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.398 0.602 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 -3.723 -10.833 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 C -0.146 4.146 4 C -0.156 4.156 5 C 0.277 3.723 6 O -0.483 6.483 7 N -0.163 5.163 8 C -0.485 4.485 9 H 0.122 0.878 10 C -0.135 4.135 11 N -0.455 5.455 12 Si 0.668 3.332 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.180 1.180 16 C -0.003 4.003 17 C 0.301 3.699 18 O -0.383 6.383 19 O -0.340 6.340 20 C -0.160 4.160 21 C -0.197 4.197 22 C 0.306 3.694 23 O -0.422 6.422 24 N -0.372 5.372 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.256 0.744 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.556 -4.134 -10.809 11.586 hybrid contribution -0.202 0.902 0.696 1.157 sum -0.758 -3.232 -10.113 10.644 Atomic orbital electron populations 1.22145 0.93219 1.02411 1.03733 1.21147 0.94717 0.92268 0.85082 1.21768 1.01815 0.92252 0.98717 1.21359 1.02641 0.93221 0.98390 1.20452 0.82246 0.88354 0.81236 1.90548 1.44162 1.77316 1.36261 1.43341 1.45575 1.09271 1.18071 1.18906 1.21814 0.99593 1.08220 0.87789 1.25304 0.96717 0.97130 0.94389 1.70039 1.31892 1.36902 1.06697 0.87455 0.82195 0.81639 0.81925 1.19639 1.20398 1.17961 1.21286 0.87847 0.88832 1.02384 1.24629 0.88928 0.80273 0.76080 1.90673 1.70632 1.34895 1.42059 1.84572 1.32509 1.39606 1.77291 1.22694 0.96566 0.99675 0.97072 1.22353 1.00162 1.03577 0.93625 1.20841 0.79114 0.78546 0.90943 1.90742 1.52149 1.41617 1.57670 1.46431 1.35978 1.43183 1.11599 0.90821 0.92170 0.91012 0.90116 0.91159 0.89719 0.88849 0.91223 0.87479 0.87610 0.74397 0.89952 0.88964 0.88409 0.87814 0.74945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 8.52 37.15 0.32 -1.20 16 2 C 0.15 1.72 0.87 -130.90 -0.11 1.61 16 3 C -0.11 -1.51 3.67 -26.73 -0.10 -1.61 16 4 C -0.12 -2.03 3.92 -27.88 -0.11 -2.14 16 5 C 0.49 10.67 7.62 -10.99 -0.08 10.59 16 6 O -0.60 -14.02 15.61 5.54 0.09 -13.93 16 7 N -0.44 -10.25 1.70 -116.09 -0.20 -10.45 16 8 C -0.36 -8.88 8.99 -14.93 -0.13 -9.01 16 9 H 0.10 2.70 7.12 -52.48 -0.37 2.33 16 10 C 0.08 1.86 4.99 -17.47 -0.09 1.77 16 11 N -0.82 -21.46 13.96 55.50 0.77 -20.69 16 12 Si 0.84 17.90 26.34 -169.99 -4.48 13.43 16 13 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.26 -5.20 5.89 56.52 0.33 -4.87 16 16 C 0.12 2.64 4.32 -5.19 -0.02 2.62 16 17 C 0.46 9.87 8.37 36.00 0.30 10.17 16 18 O -0.50 -12.33 17.20 -18.75 -0.32 -12.65 16 19 O -0.53 -8.85 13.42 -39.26 -0.53 -9.38 16 20 C -0.12 -1.08 6.21 -25.09 -0.16 -1.24 16 21 C -0.16 -1.65 6.86 -26.74 -0.18 -1.83 16 22 C 0.52 7.59 8.43 -10.86 -0.09 7.50 16 23 O -0.54 -10.29 18.03 5.55 0.10 -10.19 16 24 N -0.72 -9.35 4.87 -46.61 -0.23 -9.58 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.76 6.58 -51.93 -0.34 0.42 16 28 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 29 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.08 1.55 6.89 -51.93 -0.36 1.19 16 31 H 0.09 1.51 6.52 -51.93 -0.34 1.18 16 32 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.11 2.16 7.51 -51.93 -0.39 1.77 16 34 H 0.11 2.23 4.35 -51.93 -0.23 2.00 16 35 H 0.40 4.78 9.10 45.56 0.41 5.19 16 36 H 0.08 0.60 7.91 -51.93 -0.41 0.19 16 37 H 0.09 0.71 7.89 -51.93 -0.41 0.30 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.41 5.40 8.65 -40.82 -0.35 5.04 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -33.38 333.61 -4.75 -38.12 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -4.52 Total: 13.06 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: -0.46 Total: 17.22 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.35 Total: -40.71 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.66 Total: -46.14 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -4.48 Total: 13.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.38 -4.75 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833564475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.512 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds