Wall clock time and date at job start Fri Apr 10 2020 17:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30430 * 125.99139 * 2 1 4 4 N 1.39932 * 108.91921 * 179.97438 * 3 2 1 5 5 H 0.97001 * 125.74094 * 179.97438 * 4 3 2 6 6 C 1.34221 * 108.51118 * 0.24752 * 4 3 2 7 7 C 1.38128 * 107.40944 * 359.61229 * 6 4 3 8 8 C 1.47287 * 126.42789 * 180.11428 * 7 6 4 9 9 O 1.21520 * 120.00283 * 180.32270 * 8 7 6 10 10 O 1.34758 * 119.99840 * 0.31642 * 8 7 6 11 11 C 1.45200 * 116.99846 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47005 * 180.02562 * 11 10 8 13 13 O 1.42902 * 109.47098 * 64.99760 * 12 11 10 14 14 C 1.42906 * 113.99927 * 179.97438 * 13 12 11 15 15 C 1.52991 * 109.47170 * 180.02562 * 14 13 12 16 16 O 1.42905 * 109.47111 * 64.99981 * 15 14 13 17 17 C 1.42905 * 113.99968 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.46903 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00231 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99748 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99948 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99747 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47589 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.46965 * 120.00046 * 22 20 18 25 25 H 1.48499 * 109.46927 * 239.99798 * 22 20 18 26 26 H 1.08997 * 109.47164 * 90.02426 * 1 2 3 27 27 H 1.09002 * 109.46676 * 210.01960 * 1 2 3 28 28 H 1.08992 * 109.47147 * 330.02073 * 1 2 3 29 29 H 1.08003 * 126.29824 * 179.72433 * 6 4 3 30 30 H 1.08999 * 109.46764 * 300.00098 * 11 10 8 31 31 H 1.08992 * 109.47248 * 59.99986 * 11 10 8 32 32 H 1.09004 * 109.46928 * 185.00097 * 12 11 10 33 33 H 1.09000 * 109.46947 * 304.99951 * 12 11 10 34 34 H 1.09005 * 109.47057 * 300.00296 * 14 13 12 35 35 H 1.08999 * 109.47003 * 60.00262 * 14 13 12 36 36 H 1.08995 * 109.47236 * 185.00059 * 15 14 13 37 37 H 1.09005 * 109.47315 * 305.00234 * 15 14 13 38 38 H 1.08994 * 109.47408 * 300.00809 * 17 16 15 39 39 H 1.09004 * 109.46693 * 60.00536 * 17 16 15 40 40 H 0.97003 * 119.99963 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6445 0.0006 5 1 4.3839 1.2308 0.0004 6 6 3.6449 -0.6973 -0.0045 7 6 2.3377 -1.1435 0.0005 8 6 1.8929 -2.5476 0.0000 9 8 0.7061 -2.8091 -0.0011 10 8 2.8019 -3.5424 0.0005 11 6 2.2916 -4.9017 -0.0006 12 6 3.4628 -5.8862 0.0009 13 8 4.1920 -5.7571 1.2231 14 6 5.3127 -6.6377 1.3270 15 6 6.0143 -6.4141 2.6681 16 8 5.1381 -6.7900 3.7326 17 6 5.7000 -6.6196 5.0355 18 6 4.6954 -7.0449 6.0752 19 1 3.7252 -7.4092 5.7714 20 6 5.0151 -6.9688 7.4143 21 7 6.1964 -6.5246 7.7841 22 14 3.7701 -7.4966 8.7030 23 1 2.5265 -7.9534 8.0322 24 1 4.3345 -8.6078 9.5106 25 1 3.4595 -6.3475 9.5910 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8901 0.5135 29 1 4.5311 -1.3146 -0.0097 30 1 1.6818 -5.0616 0.8886 31 1 1.6838 -5.0609 -0.8913 32 1 3.0823 -6.9037 -0.0896 33 1 4.1215 -5.6685 -0.8399 34 1 4.9702 -7.6707 1.2643 35 1 6.0099 -6.4360 0.5138 36 1 6.9188 -7.0208 2.7105 37 1 6.2779 -5.3612 2.7691 38 1 6.5978 -7.2308 5.1268 39 1 5.9573 -5.5711 5.1858 40 1 6.4211 -6.4708 8.7262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861319569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:34 Heat of formation + Delta-G solvation = -112.239040 kcal Electronic energy + Delta-G solvation = -23187.746477 eV Core-core repulsion = 19390.696931 eV Total energy + Delta-G solvation = -3797.049546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.73182 -39.97736 -38.03037 -36.58519 -36.04832 -33.29902 -32.73745 -31.47209 -30.48150 -28.82305 -28.24549 -26.73951 -24.23700 -22.54944 -22.39601 -21.90908 -21.18880 -20.01810 -18.56470 -17.45352 -17.04646 -16.42750 -16.26604 -16.01961 -15.88904 -15.16829 -14.93529 -14.61507 -14.40711 -14.34186 -14.09140 -13.27724 -13.21457 -13.07896 -13.05756 -12.65910 -12.33219 -12.07279 -11.70255 -11.61109 -11.32592 -11.13830 -10.80002 -10.77406 -10.69925 -10.46193 -10.41651 -9.98259 -9.86629 -9.48552 -9.21148 -9.06089 -8.81460 -8.15142 -6.08816 -4.09837 1.10552 1.76723 2.26170 2.74150 3.04208 3.31437 3.37769 3.44964 3.73886 4.16758 4.37198 4.38490 4.81821 4.84379 4.88003 4.93034 5.06810 5.15032 5.23787 5.27899 5.40226 5.44683 5.45223 5.55869 5.58192 5.70888 5.71418 6.01050 6.02111 6.13064 6.22269 6.44430 6.71883 7.11041 7.17031 7.34246 7.45247 7.81154 7.82750 8.17738 8.60321 9.04101 9.54932 11.02910 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013309 B = 0.002871 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.403119 B = 9750.102398 C =10509.094511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.141 3.859 3 N -0.301 5.301 4 N -0.460 5.460 5 H 0.447 0.553 6 C 0.141 3.859 7 C -0.281 4.281 8 C 0.544 3.456 9 O -0.515 6.515 10 O -0.347 6.347 11 C 0.074 3.926 12 C 0.061 3.939 13 O -0.368 6.368 14 C 0.068 3.932 15 C 0.063 3.937 16 O -0.389 6.389 17 C 0.194 3.806 18 C -0.512 4.512 19 H 0.067 0.933 20 C 0.055 3.945 21 N -0.900 5.900 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.282 1.282 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.198 0.802 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.004 0.996 39 H 0.005 0.995 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 10.456 -21.340 24.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 N -0.124 5.124 4 N -0.164 5.164 5 H 0.292 0.708 6 C -0.013 4.013 7 C -0.294 4.294 8 C 0.389 3.611 9 O -0.404 6.404 10 O -0.264 6.264 11 C 0.000 4.000 12 C -0.016 4.016 13 O -0.287 6.287 14 C -0.008 4.008 15 C -0.014 4.014 16 O -0.309 6.309 17 C 0.120 3.880 18 C -0.550 4.550 19 H 0.085 0.915 20 C -0.146 4.146 21 N -0.539 5.539 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.208 1.208 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.215 0.785 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.137 11.706 -21.051 24.440 hybrid contribution 0.423 -1.019 0.643 1.277 sum -3.715 10.687 -20.409 23.335 Atomic orbital electron populations 1.20407 0.85387 1.04489 1.03738 1.22522 0.97500 0.88279 0.94408 1.77207 0.86252 1.22150 1.26757 1.46148 1.07956 1.05681 1.56605 0.70798 1.23434 0.99532 0.85226 0.93102 1.19401 0.92725 0.91331 1.25908 1.19904 0.83914 0.84902 0.72364 1.90800 1.17706 1.84638 1.47304 1.86561 1.39492 1.16137 1.84198 1.23110 0.96119 0.77288 1.03484 1.22513 0.93300 0.97262 0.88487 1.88109 1.42849 1.61053 1.36656 1.22586 0.87838 0.93711 0.96691 1.22249 0.92647 0.99149 0.87383 1.87917 1.40870 1.86628 1.15461 1.20209 0.94446 0.95475 0.77872 1.21109 1.01056 1.42959 0.89912 0.91463 1.24955 0.95832 0.95353 0.98445 1.69974 1.20529 1.46752 1.16678 0.86281 0.81159 0.78202 0.80870 1.19430 1.20868 1.20835 0.89951 0.88500 0.90607 0.78546 0.89805 0.89791 0.91001 0.92581 0.92692 0.92739 0.93003 0.93679 0.97787 0.97679 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.92 36.01 0.36 -0.43 16 2 C 0.14 1.63 7.27 -82.01 -0.60 1.03 16 3 N -0.30 -3.33 12.63 33.90 0.43 -2.90 16 4 N -0.46 -3.64 7.28 30.86 0.22 -3.41 16 5 H 0.45 1.83 8.96 -182.72 -1.64 0.19 16 6 C 0.14 1.20 11.86 -16.55 -0.20 1.01 16 7 C -0.28 -3.29 6.13 -105.08 -0.64 -3.94 16 8 C 0.54 7.34 7.95 34.41 0.27 7.61 16 9 O -0.51 -7.81 14.71 -19.28 -0.28 -8.10 16 10 O -0.35 -4.55 10.02 -43.43 -0.44 -4.99 16 11 C 0.07 0.88 5.85 37.16 0.22 1.10 16 12 C 0.06 0.70 6.33 37.16 0.24 0.94 16 13 O -0.37 -5.99 10.28 -48.79 -0.50 -6.49 16 14 C 0.07 1.01 6.32 37.15 0.23 1.25 16 15 C 0.06 1.19 6.32 37.15 0.23 1.42 16 16 O -0.39 -9.71 10.29 -40.08 -0.41 -10.13 16 17 C 0.19 5.45 5.69 36.00 0.20 5.66 16 18 C -0.51 -15.45 9.43 -34.44 -0.32 -15.77 16 19 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 22 Si 0.91 22.23 29.54 -169.99 -5.02 17.21 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.05 6.56 -51.93 -0.34 0.71 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.20 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -37.35 355.28 -7.03 -44.38 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -7.02 Total: -5.79 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.10 Total: 1.39 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 1.39 Total: -32.84 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.63 Total: -29.71 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.35 -7.03 -44.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.861 kcal (2) G-P(sol) polarization free energy of solvation -37.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds