Wall clock time and date at job start Fri Apr 10 2020 17:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00033 * 2 1 4 4 C 1.52993 * 109.47207 * 293.95532 * 3 2 1 5 5 S 1.81402 * 109.47570 * 179.97438 * 4 3 2 6 6 N 1.65600 * 104.45194 * 179.97438 * 5 4 3 7 7 O 1.42100 * 110.53796 * 291.62656 * 5 4 3 8 8 O 1.42092 * 110.54294 * 68.37060 * 5 4 3 9 9 C 1.46908 * 111.00230 * 123.95282 * 2 1 3 10 10 C 1.50695 * 109.46779 * 66.04473 * 9 2 1 11 11 C 1.38629 * 119.75181 * 269.72629 * 10 9 2 12 12 C 1.37627 * 120.24776 * 179.72154 * 11 10 9 13 13 C 1.40715 * 119.74261 * 0.57802 * 12 11 10 14 14 C 1.41397 * 120.24270 * 179.67826 * 13 12 11 15 15 H 1.07997 * 119.99689 * 155.30771 * 14 13 12 16 16 C 1.39941 * 120.00003 * 335.31387 * 14 13 12 17 17 N 1.30821 * 120.00050 * 342.22763 * 16 14 13 18 18 Si 1.86797 * 120.00166 * 162.23288 * 16 14 13 19 19 H 1.48500 * 109.47559 * 94.65963 * 18 16 14 20 20 H 1.48504 * 109.47284 * 214.66241 * 18 16 14 21 21 H 1.48502 * 109.47104 * 334.66034 * 18 16 14 22 22 C 1.40713 * 119.51305 * 359.69786 * 13 12 11 23 23 C 1.37614 * 119.74305 * 0.02562 * 22 13 12 24 24 H 1.08997 * 109.47030 * 59.99904 * 1 2 3 25 25 H 1.08998 * 109.47108 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47277 * 299.99669 * 1 2 3 27 27 H 1.09000 * 109.47016 * 53.95471 * 3 2 1 28 28 H 1.09001 * 109.47049 * 173.94962 * 3 2 1 29 29 H 1.09000 * 109.47083 * 299.99898 * 4 3 2 30 30 H 1.09001 * 109.47581 * 59.99756 * 4 3 2 31 31 H 0.96998 * 119.99509 * 149.99595 * 6 5 4 32 32 H 0.96999 * 119.99540 * 329.99930 * 6 5 4 33 33 H 1.08994 * 109.47066 * 186.05136 * 9 2 1 34 34 H 1.09005 * 109.46617 * 306.04871 * 9 2 1 35 35 H 1.07998 * 119.87965 * 359.97438 * 11 10 9 36 36 H 1.07997 * 120.12933 * 180.27950 * 12 11 10 37 37 H 0.97001 * 120.00193 * 180.02562 * 17 16 14 38 38 H 1.07993 * 120.12802 * 179.97438 * 22 13 12 39 39 H 1.08001 * 119.87561 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 16 2.2808 3.7512 -1.3180 6 7 1.8217 4.3701 -2.7838 7 8 1.5895 4.5501 -0.3676 8 8 3.7007 3.7409 -1.3717 9 6 1.9955 -0.7660 1.1376 10 6 1.6370 -2.2204 0.9729 11 6 0.4491 -2.7003 1.5025 12 6 0.1089 -4.0255 1.3531 13 6 0.9777 -4.8966 0.6702 14 6 0.6418 -6.2615 0.5165 15 1 1.0571 -6.8309 -0.3018 16 6 -0.2289 -6.8743 1.4245 17 7 -0.4584 -6.3197 2.5869 18 14 -1.0635 -8.4845 0.9771 19 1 -0.2667 -9.6195 1.5083 20 1 -2.4257 -8.5169 1.5674 21 1 -1.1615 -8.5973 -0.5004 22 6 2.1834 -4.3996 0.1418 23 6 2.5004 -3.0696 0.2982 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1083 29 1 2.0658 1.5016 -2.1491 30 1 0.5472 2.0845 -1.4265 31 1 1.6496 5.3201 -2.8766 32 1 1.7249 3.7824 -3.5494 33 1 3.0797 -0.6610 1.1757 34 1 1.5611 -0.3872 2.0628 35 1 -0.2136 -2.0310 2.0309 36 1 -0.8191 -4.3964 1.7626 37 1 -1.0616 -6.7447 3.2165 38 1 2.8577 -5.0594 -0.3838 39 1 3.4255 -2.6859 -0.1062 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880085079.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:46 Heat of formation + Delta-G solvation = -54.163416 kcal Electronic energy + Delta-G solvation = -21357.711584 eV Core-core repulsion = 18005.933257 eV Total energy + Delta-G solvation = -3351.778327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.37529 -37.24150 -36.83469 -36.15424 -33.83881 -33.49733 -31.85337 -29.77197 -29.35271 -27.30846 -25.79330 -23.50739 -21.43198 -20.88214 -19.81042 -19.63382 -17.90589 -17.59443 -17.31839 -16.44075 -15.94783 -15.43722 -15.18364 -14.95102 -14.57547 -13.98554 -13.95475 -13.34064 -13.18247 -12.51360 -12.45668 -12.41665 -12.31524 -12.18920 -11.98727 -11.68903 -11.50323 -11.46527 -11.31517 -11.11052 -10.96247 -10.91329 -10.69993 -10.56769 -10.36372 -9.60693 -9.41364 -9.15009 -8.15729 -7.45906 -7.32298 -6.79413 -4.37547 -0.01172 2.59736 2.70370 3.04170 3.05851 3.08228 3.14775 3.40387 3.90448 4.06912 4.18465 4.38992 4.62214 4.70751 5.15288 5.30302 5.45721 5.52721 5.64327 5.66275 5.69452 5.83679 5.96494 6.20818 6.30753 6.33688 6.38460 6.70894 6.91677 7.04725 7.15795 7.26036 7.31071 7.35781 7.59371 7.85431 8.03097 8.10760 8.27986 8.61397 8.87191 8.95229 10.15167 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.042085 B = 0.002578 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.159922 B =10858.342642 C =10928.396840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.526 5.526 3 C 0.063 3.937 4 C -0.617 4.617 5 S 2.616 3.384 6 N -1.252 6.252 7 O -0.966 6.966 8 O -0.962 6.962 9 C 0.116 3.884 10 C -0.211 4.211 11 C -0.093 4.093 12 C -0.166 4.166 13 C 0.113 3.887 14 C -0.462 4.462 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.793 5.793 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.228 4.228 23 C -0.068 4.068 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.419 0.581 32 H 0.414 0.586 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.280 0.720 38 H 0.091 0.909 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 15.162 -7.595 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.068 4.068 4 C -0.748 4.748 5 S 2.707 3.293 6 N -0.924 5.924 7 O -0.956 6.956 8 O -0.951 6.951 9 C -0.010 4.010 10 C -0.212 4.212 11 C -0.112 4.112 12 C -0.186 4.186 13 C 0.111 3.889 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.248 4.248 23 C -0.087 4.087 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.248 0.752 32 H 0.240 0.760 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.825 15.303 -6.925 16.817 hybrid contribution -1.240 -0.780 -0.125 1.471 sum -0.416 14.523 -7.050 16.149 Atomic orbital electron populations 1.22509 0.87456 1.03741 0.99315 1.62171 1.08211 1.09645 1.45013 1.21725 1.01379 0.91534 0.92126 1.30549 1.13732 1.22068 1.08409 1.04688 0.74910 0.76682 0.73028 1.53218 1.90360 1.19674 1.29136 1.93604 1.75248 1.66247 1.60464 1.93625 1.29511 1.86451 1.85471 1.20821 0.98644 0.92111 0.89420 1.18776 0.99071 0.92581 1.10804 1.20514 0.95553 0.95568 0.99576 1.21273 1.00718 0.91704 1.04892 1.17626 0.89440 0.93036 0.88846 1.19602 1.23705 0.95331 1.10549 0.90476 1.25912 0.95031 0.99423 0.93799 1.69827 1.28543 1.38552 1.04891 0.86334 0.78965 0.81443 0.80192 1.19575 1.20055 1.18426 1.20966 0.98356 0.94958 1.10524 1.20327 0.97263 0.93510 0.97592 0.92291 0.89417 0.95998 0.93566 0.89368 0.83887 0.84639 0.75178 0.76020 0.91371 0.95330 0.89884 0.86601 0.90898 0.89097 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.98 60.06 0.54 0.79 16 2 N -0.53 -7.87 4.75 -244.37 -1.16 -9.04 16 3 C 0.06 0.74 4.97 -3.83 -0.02 0.72 16 4 C -0.62 -5.16 6.10 37.15 0.23 -4.94 16 5 S 2.62 22.99 5.97 -107.50 -0.64 22.35 16 6 N -1.25 -6.45 9.36 60.35 0.57 -5.89 16 7 O -0.97 -11.97 18.10 -57.54 -1.04 -13.01 16 8 O -0.96 -12.19 18.10 -57.54 -1.04 -13.24 16 9 C 0.12 1.97 5.11 -4.97 -0.03 1.94 16 10 C -0.21 -4.39 4.91 -104.33 -0.51 -4.91 16 11 C -0.09 -2.08 7.87 -39.66 -0.31 -2.39 16 12 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 13 C 0.11 2.96 5.57 -106.82 -0.60 2.37 16 14 C -0.46 -12.12 9.05 -37.74 -0.34 -12.46 16 15 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 16 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 17 N -0.79 -20.24 10.97 55.55 0.61 -19.63 16 18 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 23 C -0.07 -1.49 9.67 -39.66 -0.38 -1.88 16 24 H 0.06 0.69 6.47 -51.93 -0.34 0.35 16 25 H 0.09 1.47 5.90 -51.93 -0.31 1.16 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.09 0.98 7.93 -51.93 -0.41 0.57 16 29 H 0.14 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.14 0.94 6.55 -51.92 -0.34 0.60 16 31 H 0.42 1.75 8.96 -34.46 -0.31 1.44 16 32 H 0.41 1.07 8.96 -34.47 -0.31 0.77 16 33 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 34 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 35 H 0.08 1.69 7.99 -52.49 -0.42 1.27 16 36 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 37 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 38 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -33.40 335.62 -10.16 -43.56 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.24 Total: 5.88 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: -2.23 Total: -29.40 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.01 Total: -34.55 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -2.08 Total: -26.25 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 22.99 SS G_CDS: -0.64 Total: 22.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.40 -10.16 -43.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880085079.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.605 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds