Wall clock time and date at job start Fri Apr 10 2020 17:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 5 5 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 6 6 N 1.46503 * 109.46923 * 175.00014 * 5 2 1 7 7 S 1.65604 * 119.99600 * 164.99825 * 6 5 2 8 8 O 1.42094 * 106.40019 * 178.53978 * 7 6 5 9 9 O 1.42090 * 106.40503 * 311.46372 * 7 6 5 10 10 C 1.76206 * 107.21622 * 65.00548 * 7 6 5 11 11 C 1.38232 * 119.99505 * 269.72584 * 10 7 6 12 12 C 1.38237 * 119.99630 * 179.77182 * 11 10 7 13 13 C 1.38245 * 119.99976 * 0.47348 * 12 11 10 14 14 C 1.50696 * 119.99902 * 179.77200 * 13 12 11 15 15 C 1.50699 * 109.47172 * 270.02521 * 14 13 12 16 16 H 1.07995 * 120.00089 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99999 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99994 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47128 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47333 * 120.00227 * 19 17 15 22 22 H 1.48499 * 109.46930 * 240.00065 * 19 17 15 23 23 C 1.38229 * 119.99523 * 359.79989 * 13 12 11 24 24 C 1.38229 * 120.00727 * 359.95082 * 23 13 12 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 1.00907 * 110.99802 * 59.99881 * 4 2 1 29 29 H 1.00898 * 110.99862 * 183.94977 * 4 2 1 30 30 H 1.08993 * 109.47322 * 295.00205 * 5 2 1 31 31 H 1.09002 * 109.47196 * 55.00329 * 5 2 1 32 32 H 0.96993 * 120.00127 * 345.00462 * 6 5 2 33 33 H 1.07993 * 120.00661 * 359.97438 * 11 10 7 34 34 H 1.08006 * 120.00080 * 180.25334 * 12 11 10 35 35 H 1.09004 * 109.47149 * 30.02989 * 14 13 12 36 36 H 1.09000 * 109.46613 * 150.02550 * 14 13 12 37 37 H 0.97002 * 119.99871 * 179.97438 * 18 17 15 38 38 H 1.08009 * 119.99432 * 179.97438 * 23 13 12 39 39 H 1.07995 * 120.00359 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0401 -0.7213 1.2492 6 7 3.5001 -0.8264 1.1905 7 16 4.3575 -1.2176 2.5522 8 8 5.7233 -1.2732 2.1643 9 8 3.8771 -0.3698 3.5863 10 6 3.9010 -2.8590 3.0022 11 6 2.8412 -3.0698 3.8643 12 6 2.4801 -4.3577 4.2136 13 6 3.1851 -5.4343 3.7085 14 6 2.7947 -6.8380 4.0934 15 6 3.5487 -7.2473 5.3324 16 1 4.2410 -6.5596 5.7950 17 6 3.3546 -8.4998 5.8752 18 7 2.5119 -9.3374 5.3115 19 14 4.2887 -9.0069 7.4113 20 1 5.1684 -7.8923 7.8463 21 1 3.3242 -9.3282 8.4937 22 1 5.1166 -10.2035 7.1148 23 6 4.2484 -5.2231 2.8510 24 6 4.6063 -3.9355 2.4976 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.6962 -0.2348 -2.0386 29 1 3.0262 -0.7624 -1.1910 30 1 1.7517 -0.1584 2.1369 31 1 1.6055 -1.7199 1.2951 32 1 3.9646 -0.6667 0.3541 33 1 2.2932 -2.2287 4.2623 34 1 1.6495 -4.5226 4.8839 35 1 1.7233 -6.8759 4.2909 36 1 3.0382 -7.5192 3.2782 37 1 2.3756 -10.2187 5.6932 38 1 4.7994 -6.0642 2.4567 39 1 5.4368 -3.7706 1.8272 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886885023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:51 Heat of formation + Delta-G solvation = -88.956645 kcal Electronic energy + Delta-G solvation = -21700.255840 eV Core-core repulsion = 18346.968765 eV Total energy + Delta-G solvation = -3353.287075 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22346 -38.52362 -38.17238 -36.98547 -35.59698 -34.22598 -33.31144 -31.95264 -30.21771 -29.24356 -26.66524 -25.59321 -23.72902 -22.47811 -21.62581 -20.56623 -19.07784 -18.60870 -18.43947 -17.48899 -16.90356 -16.71941 -16.58860 -16.08852 -15.96798 -15.58048 -15.24219 -14.64410 -14.44737 -14.12682 -13.93279 -13.77012 -13.53198 -13.41186 -13.37248 -13.22223 -13.15500 -12.72116 -12.68641 -12.66359 -12.56589 -12.15498 -12.03505 -11.95345 -11.65055 -11.43741 -10.65974 -10.54267 -9.95237 -9.94259 -9.56511 -8.27303 -6.40070 -0.62782 -0.05340 0.40907 1.37384 1.38745 1.51600 2.00146 2.34871 2.56311 2.82660 3.05306 3.29400 3.59388 3.83609 3.88534 3.98467 4.16007 4.16781 4.35208 4.43977 4.48391 4.51874 4.73845 4.82651 4.91725 4.98203 5.02707 5.10450 5.11353 5.25198 5.26198 5.34218 5.41056 5.67144 5.86784 5.93222 5.98542 6.09987 6.29273 6.61585 6.71956 7.29080 8.83014 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.022482 B = 0.003493 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.144964 B = 8013.477113 C = 8601.038864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.085 3.915 3 H 0.054 0.946 4 N -0.854 5.854 5 C 0.111 3.889 6 N -1.102 6.102 7 S 2.730 3.270 8 O -0.986 6.986 9 O -0.982 6.982 10 C -0.700 4.700 11 C -0.020 4.020 12 C -0.155 4.155 13 C -0.004 4.004 14 C 0.048 3.952 15 C -0.533 4.533 16 H 0.053 0.947 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.157 4.157 24 C -0.018 4.018 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.354 0.646 29 H 0.343 0.657 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.424 0.576 33 H 0.158 0.842 34 H 0.130 0.870 35 H 0.014 0.986 36 H 0.012 0.988 37 H 0.267 0.733 38 H 0.128 0.872 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 20.207 -12.375 23.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 H 0.072 0.928 4 N -0.388 5.388 5 C -0.015 4.015 6 N -0.865 5.865 7 S 2.820 3.180 8 O -0.976 6.976 9 O -0.972 6.972 10 C -0.787 4.787 11 C -0.039 4.039 12 C -0.174 4.174 13 C -0.004 4.004 14 C 0.011 3.989 15 C -0.571 4.571 16 H 0.072 0.928 17 C -0.190 4.190 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.175 4.175 24 C -0.038 4.038 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.168 0.832 29 H 0.158 0.842 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.261 0.739 33 H 0.175 0.825 34 H 0.148 0.852 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.146 0.854 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.005 19.924 -11.482 23.083 hybrid contribution 0.600 -0.762 0.207 0.992 sum -1.405 19.162 -11.275 22.277 Atomic orbital electron populations 1.21810 0.92937 1.02779 1.03026 1.21469 0.96537 0.95391 0.89351 0.92791 1.58710 1.16619 1.59003 1.04515 1.21689 0.77760 1.02083 1.00012 1.55179 1.16888 1.86579 1.27888 1.00631 0.71953 0.72757 0.72638 1.93538 1.33396 1.87541 1.83107 1.93534 1.81863 1.64751 1.57038 1.30786 1.10172 1.23113 1.14659 1.21048 0.93053 0.97599 0.92162 1.21313 1.01859 0.92343 1.01861 1.20824 0.92376 0.96959 0.90273 1.18270 0.96310 0.88350 0.95998 1.21319 1.24959 0.99860 1.10966 0.92823 1.25875 0.96095 0.96357 1.00663 1.70065 1.36552 1.08010 1.41841 0.85389 0.78525 0.78289 0.78814 1.19219 1.19988 1.20061 1.21301 0.98214 0.97815 1.00213 1.21015 0.96279 0.91158 0.95298 0.92400 0.90899 0.91303 0.83212 0.84218 0.89129 0.91053 0.73871 0.82494 0.85173 0.96794 0.96924 0.92372 0.85369 0.82730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.49 71.98 0.68 -0.89 16 2 C 0.09 0.99 3.67 44.92 0.17 1.16 16 3 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 4 N -0.85 -9.59 9.24 -168.67 -1.56 -11.15 16 5 C 0.11 1.70 5.92 86.38 0.51 2.21 16 6 N -1.10 -18.19 5.89 -187.49 -1.10 -19.29 16 7 S 2.73 67.06 5.74 -56.49 -0.32 66.74 16 8 O -0.99 -28.75 17.28 -128.00 -2.21 -30.96 16 9 O -0.98 -28.46 16.75 -128.00 -2.14 -30.60 16 10 C -0.70 -20.68 5.95 22.27 0.13 -20.55 16 11 C -0.02 -0.60 9.52 22.27 0.21 -0.39 16 12 C -0.15 -5.78 9.70 22.27 0.22 -5.56 16 13 C 0.00 -0.17 5.07 -19.87 -0.10 -0.27 16 14 C 0.05 2.46 5.10 29.10 0.15 2.61 16 15 C -0.53 -29.91 9.09 25.60 0.23 -29.67 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 17 C 0.01 0.51 5.46 84.66 0.46 0.97 16 18 N -0.93 -54.43 13.29 21.45 0.28 -54.14 16 19 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.16 -5.93 9.70 22.27 0.22 -5.72 16 24 C -0.02 -0.58 9.52 22.27 0.21 -0.37 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.35 2.78 9.04 -89.69 -0.81 1.97 16 29 H 0.34 3.25 7.08 -89.70 -0.63 2.62 16 30 H 0.09 1.31 7.75 -2.39 -0.02 1.29 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.42 5.08 6.89 -96.75 -0.67 4.41 16 33 H 0.16 3.92 7.61 -2.91 -0.02 3.89 16 34 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 35 H 0.01 0.75 8.09 -2.38 -0.02 0.73 16 36 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 37 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 39 H 0.16 4.04 7.62 -2.91 -0.02 4.02 16 Total: -1.00 -71.50 342.27 -2.97 -74.47 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -1.03 Total: 15.57 kcal Atomic # 6 Polarization: -59.56 SS G_CDS: 3.09 Total: -56.47 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -2.38 Total: -84.59 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -4.36 Total: -61.56 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 67.06 SS G_CDS: -0.32 Total: 66.74 kcal Total: -71.50 -2.97 -74.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.488 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds