Wall clock time and date at job start Fri Apr 10 2020 17:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 120.00102 * 2 1 4 4 H 1.48501 * 109.47405 * 270.00308 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47409 * 150.00077 * 3 2 1 7 7 C 1.38795 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00171 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47178 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.85593 * 328.78817 * 14 13 11 16 16 C 1.54631 * 110.96967 * 92.61661 * 14 13 11 17 17 C 1.51287 * 104.19249 * 142.92004 * 16 14 13 18 18 O 1.21273 * 124.94083 * 163.75363 * 17 16 14 19 19 N 1.34420 * 110.11630 * 343.74289 * 17 16 14 20 20 C 1.46499 * 124.35064 * 179.61281 * 19 17 16 21 21 C 1.52992 * 109.47531 * 269.98217 * 20 19 17 22 22 C 1.53006 * 117.49971 * 243.62283 * 21 20 19 23 23 C 1.53001 * 117.50058 * 174.99767 * 21 20 19 24 24 C 1.46769 * 111.30015 * 359.59893 * 19 17 16 25 25 H 0.97005 * 119.99806 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 27 27 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 28 28 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 29 29 H 1.08994 * 110.48255 * 261.59102 * 16 14 13 30 30 H 1.08994 * 110.48559 * 24.24442 * 16 14 13 31 31 H 1.09002 * 109.46758 * 29.98145 * 20 19 17 32 32 H 1.08996 * 109.47099 * 149.97700 * 20 19 17 33 33 H 1.09005 * 115.54840 * 29.32459 * 21 20 19 34 34 H 1.08994 * 117.49825 * 359.97438 * 22 21 20 35 35 H 1.08998 * 117.49970 * 145.02033 * 22 21 20 36 36 H 1.09003 * 117.49852 * 214.97413 * 23 21 20 37 37 H 1.08994 * 117.50030 * 359.97438 * 23 21 20 38 38 H 1.08999 * 110.24250 * 258.01400 * 24 19 17 39 39 H 1.09004 * 110.31727 * 136.05532 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0021 11 6 1.9874 -5.3027 -0.0030 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0037 14 6 2.3304 -7.7150 -0.0051 15 1 1.3784 -7.7735 0.5224 16 6 2.1985 -8.2551 -1.4480 17 6 2.5930 -9.7114 -1.3366 18 8 2.3621 -10.5594 -2.1722 19 7 3.2368 -9.9284 -0.1767 20 6 3.7493 -11.2319 0.2528 21 6 2.6694 -11.9675 1.0486 22 6 2.9600 -12.2722 2.5196 23 6 2.9694 -13.4021 1.4880 24 6 3.3607 -8.6917 0.6039 25 1 -0.4850 0.8401 0.0004 26 1 3.1238 -3.7309 -0.8925 27 1 3.1252 -3.7317 0.8875 28 1 3.8009 -6.1834 -0.0040 29 1 1.1698 -8.1642 -1.7967 30 1 2.8773 -7.7261 -2.1169 31 1 4.0209 -11.8219 -0.6226 32 1 4.6285 -11.0877 0.8807 33 1 1.6409 -11.7289 0.7774 34 1 3.9207 -11.9488 2.9202 35 1 2.1227 -12.2339 3.2164 36 1 2.1383 -14.1071 1.5062 37 1 3.9360 -13.8219 1.2097 38 1 4.3676 -8.2852 0.5091 39 1 3.1278 -8.8807 1.6518 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894004772.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:09 Heat of formation + Delta-G solvation = -43.821991 kcal Electronic energy + Delta-G solvation = -20976.583477 eV Core-core repulsion = 17625.253587 eV Total energy + Delta-G solvation = -3351.329889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.89803 -39.12926 -37.76703 -36.63814 -34.28788 -32.46424 -31.65845 -29.17110 -27.79374 -26.63752 -25.50252 -22.79993 -22.10749 -21.44235 -20.66997 -19.61295 -17.95766 -17.26529 -17.02985 -16.34020 -16.01937 -15.54195 -15.01998 -14.99106 -14.83371 -14.48241 -14.00551 -13.81680 -13.53324 -13.36161 -13.22588 -13.06120 -12.60153 -12.34672 -12.05302 -11.92537 -11.78937 -11.46116 -11.09330 -11.05998 -10.89697 -10.79615 -10.39336 -10.17476 -9.85947 -9.53829 -9.12687 -9.08791 -9.06244 -8.28862 -6.54625 -6.25160 -3.96297 2.33641 2.52898 2.91527 2.95410 3.20152 3.24492 3.28297 3.39321 3.58113 4.07909 4.16910 4.22906 4.32175 4.49323 4.56044 4.63888 4.71502 4.83568 5.04472 5.09672 5.10265 5.17675 5.20645 5.23893 5.31559 5.48884 5.51831 5.68722 5.70331 5.75775 5.76799 5.81748 6.06933 6.20175 6.41076 6.77677 7.51304 7.56379 7.90608 8.31560 8.45689 9.20315 10.82200 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.037808 B = 0.002444 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.411284 B =11455.023951 C =11643.338568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.511 6.511 13 N -0.730 5.730 14 C 0.139 3.861 15 H 0.114 0.886 16 C -0.170 4.170 17 C 0.523 3.477 18 O -0.528 6.528 19 N -0.617 5.617 20 C 0.158 3.842 21 C -0.173 4.173 22 C -0.179 4.179 23 C -0.174 4.174 24 C 0.099 3.901 25 H 0.269 0.731 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.401 0.599 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.072 -21.749 3.843 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.384 6.384 13 N -0.385 5.385 14 C 0.032 3.968 15 H 0.132 0.868 16 C -0.211 4.211 17 C 0.311 3.689 18 O -0.404 6.404 19 N -0.352 5.352 20 C 0.036 3.964 21 C -0.192 4.192 22 C -0.215 4.215 23 C -0.211 4.211 24 C -0.025 4.025 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.236 0.764 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.801 -22.472 3.426 24.376 hybrid contribution 2.432 1.362 0.092 2.789 sum 11.232 -21.110 3.518 24.169 Atomic orbital electron populations 1.70013 1.05957 1.27516 1.46732 1.24995 0.95036 0.99065 0.94499 0.86163 0.79392 0.81541 0.78371 1.20256 1.20748 1.19695 1.22854 0.94898 0.91593 1.59102 0.90885 1.85429 1.04726 0.96376 1.96739 1.23535 1.06746 0.95039 1.05107 1.20380 0.86504 0.86242 0.74686 1.90722 1.15315 1.85457 1.46916 1.45944 1.10108 1.04327 1.78104 1.21648 0.98546 0.81600 0.94973 0.86804 1.22887 1.05792 0.93134 0.99326 1.20922 0.76574 0.90643 0.80802 1.90727 1.55657 1.50707 1.43333 1.48233 1.58107 1.08598 1.20213 1.20933 0.94392 0.82109 0.98966 1.22797 1.00971 0.98495 0.96927 1.23077 1.03233 1.03298 0.91939 1.22935 1.03338 0.91230 1.03643 1.22317 0.99616 0.83952 0.96637 0.92139 0.89045 0.89024 0.76400 0.87182 0.87190 0.89437 0.90064 0.87468 0.88635 0.88707 0.88612 0.88591 0.90443 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.71 13.22 55.49 0.73 -24.97 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.85 9.50 30.94 0.29 -14.55 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.15 -2.85 6.16 36.01 0.22 -2.63 16 11 C 0.54 8.90 7.85 -10.98 -0.09 8.82 16 12 O -0.51 -10.65 15.50 5.56 0.09 -10.56 16 13 N -0.73 -7.95 5.15 -52.23 -0.27 -8.22 16 14 C 0.14 1.37 3.53 -66.30 -0.23 1.14 16 15 H 0.11 1.32 7.54 -51.93 -0.39 0.93 16 16 C -0.17 -1.83 6.59 -26.74 -0.18 -2.00 16 17 C 0.52 6.18 8.02 -10.86 -0.09 6.09 16 18 O -0.53 -8.27 17.59 5.56 0.10 -8.18 16 19 N -0.62 -5.43 2.93 -172.42 -0.51 -5.94 16 20 C 0.16 1.17 6.22 -4.05 -0.03 1.15 16 21 C -0.17 -1.30 6.01 -90.62 -0.54 -1.85 16 22 C -0.18 -1.08 10.18 -26.72 -0.27 -1.35 16 23 C -0.17 -1.09 10.25 -26.73 -0.27 -1.36 16 24 C 0.10 0.69 7.08 -3.12 -0.02 0.67 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 27 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 28 H 0.40 3.10 8.43 -40.82 -0.34 2.75 16 29 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.11 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.09 0.73 7.92 -51.93 -0.41 0.32 16 32 H 0.08 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.48 8.03 -51.93 -0.42 0.06 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.40 7.80 -51.93 -0.40 0.00 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -35.30 349.64 -8.85 -44.15 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.72 Total: 0.18 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.30 Total: -3.92 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.04 Total: -39.13 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.30 -8.85 -44.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894004772.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.326 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds