Wall clock time and date at job start Fri Apr 10 2020 17:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46804 * 143.48424 * 3 2 1 5 5 C 1.37096 * 119.99970 * 263.92079 * 4 3 2 6 6 H 1.07996 * 119.99853 * 199.75651 * 5 4 3 7 7 C 1.38944 * 119.99822 * 19.75494 * 5 4 3 8 8 N 1.31420 * 120.00135 * 21.74567 * 7 5 4 9 9 Si 1.86805 * 120.00094 * 201.74484 * 7 5 4 10 10 H 1.48498 * 109.47061 * 90.00272 * 9 7 5 11 11 H 1.48499 * 109.46872 * 209.99984 * 9 7 5 12 12 H 1.48501 * 109.46772 * 330.00153 * 9 7 5 13 13 C 1.34778 * 120.00004 * 83.92640 * 4 3 2 14 14 O 1.21297 * 119.99831 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00352 * 359.97438 * 13 4 3 16 16 C 1.52994 * 109.47621 * 180.02562 * 15 13 4 17 17 H 1.09001 * 110.12477 * 306.59096 * 16 15 13 18 18 N 1.46731 * 110.09916 * 68.17821 * 16 15 13 19 19 C 1.34420 * 108.75283 * 119.19701 * 18 16 15 20 20 O 1.21549 * 124.85500 * 179.97438 * 19 18 16 21 21 C 1.47544 * 110.28897 * 0.02562 * 19 18 16 22 22 C 1.39619 * 132.34539 * 180.31457 * 21 19 18 23 23 C 1.37944 * 119.82786 * 180.16009 * 22 21 19 24 24 C 1.38391 * 120.31738 * 359.49044 * 23 22 21 25 25 C 1.38471 * 120.18931 * 0.25918 * 24 23 22 26 26 C 1.37580 * 119.95399 * 359.97438 * 25 24 23 27 27 H 4.40636 * 5.51529 * 180.02562 * 4 1 2 28 28 H 1.08992 * 109.47568 * 23.47994 * 3 2 1 29 29 H 1.09008 * 109.46931 * 263.47771 * 3 2 1 30 30 H 0.97002 * 120.00027 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47023 * 60.00000 * 15 13 4 32 32 H 1.09004 * 109.47420 * 300.00497 * 15 13 4 33 33 H 0.97001 * 125.62158 * 299.22580 * 18 16 15 34 34 H 1.08007 * 120.09039 * 359.92375 * 22 21 19 35 35 H 1.07993 * 119.84462 * 179.77223 * 23 22 21 36 36 H 1.07998 * 119.90283 * 180.28414 * 24 23 22 37 37 H 1.07993 * 120.02230 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1110 -0.8219 5 6 3.4809 0.8944 -2.1304 6 1 4.1237 1.5955 -2.6417 7 6 3.0056 -0.2273 -2.7986 8 7 1.9248 -0.8393 -2.3690 9 14 3.9027 -0.8654 -4.3078 10 1 4.9291 -1.8547 -3.8920 11 1 2.9308 -1.5155 -5.2233 12 1 4.5612 0.2668 -5.0077 13 6 3.2414 2.3454 -0.2917 14 8 3.6448 3.2648 -0.9723 15 6 2.8594 2.5837 1.1465 16 6 3.0736 4.0583 1.4936 17 1 4.0908 4.3588 1.2422 18 7 2.1079 4.8922 0.7691 19 6 1.3500 5.5511 1.6625 20 8 0.4562 6.3246 1.3791 21 6 1.7588 5.2020 3.0365 22 6 1.2897 5.6047 4.2884 23 6 1.8765 5.1074 5.4335 24 6 2.9208 4.2035 5.3473 25 6 3.3882 3.7953 4.1094 26 6 2.8131 4.2889 2.9612 27 1 -1.0502 -0.0001 0.0003 28 1 3.0098 -0.9417 -0.4094 29 1 3.0093 0.1176 1.0211 30 1 1.5928 -1.6221 -2.8358 31 1 3.4791 1.9638 1.7945 32 1 1.8104 2.3253 1.2915 33 1 2.0291 4.9570 -0.1956 34 1 0.4720 6.3066 4.3601 35 1 1.5163 5.4216 6.4019 36 1 3.3723 3.8149 6.2482 37 1 4.2035 3.0901 4.0453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907980014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:18 Heat of formation + Delta-G solvation = 37.645367 kcal Electronic energy + Delta-G solvation = -23437.901764 eV Core-core repulsion = 19954.660613 eV Total energy + Delta-G solvation = -3483.241151 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.14951 -38.73931 -37.91199 -36.09388 -35.09325 -32.30249 -31.47750 -31.27696 -30.58238 -29.86391 -26.55972 -25.36295 -23.87677 -23.66824 -21.29411 -20.33583 -19.05513 -17.95568 -17.14860 -16.72270 -16.68517 -16.35858 -15.75214 -15.46838 -14.67121 -14.60646 -14.43548 -14.12780 -14.06247 -13.58065 -13.20899 -12.87130 -12.71227 -12.48802 -12.38114 -12.09634 -11.87051 -11.68414 -11.35077 -11.07958 -11.01482 -10.55503 -10.39175 -9.77274 -9.44528 -9.33858 -9.24056 -9.05106 -9.00046 -8.79594 -8.51572 -7.96104 -6.41555 -3.96558 0.74930 1.18933 2.89532 3.08829 3.21038 3.24951 3.46177 3.55801 3.80432 3.82189 3.97427 4.06882 4.14776 4.43161 4.75979 4.85617 4.88601 4.98006 5.14804 5.21618 5.36242 5.39120 5.40303 5.59309 5.74647 5.76438 5.85110 6.15085 6.15822 6.21467 6.24177 6.26412 6.61157 6.69958 6.95062 7.01895 7.29567 7.48478 7.94470 8.30715 8.45582 8.74630 9.02349 9.24659 9.77068 10.58662 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.022456 B = 0.004109 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.606654 B = 6813.482067 C = 7005.735648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.119 4.119 3 C 0.232 3.768 4 N -0.434 5.434 5 C -0.320 4.320 6 H 0.105 0.895 7 C 0.034 3.966 8 N -0.857 5.857 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.449 3.551 14 O -0.586 6.586 15 C -0.138 4.138 16 C 0.189 3.811 17 H 0.111 0.889 18 N -0.697 5.697 19 C 0.556 3.444 20 O -0.540 6.540 21 C -0.154 4.154 22 C -0.050 4.050 23 C -0.131 4.131 24 C -0.091 4.091 25 C -0.101 4.101 26 C -0.072 4.072 27 H 0.199 0.801 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.433 0.567 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 2.969 15.295 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.120 4.120 3 C 0.109 3.891 4 N -0.151 5.151 5 C -0.447 4.447 6 H 0.123 0.877 7 C -0.171 4.171 8 N -0.494 5.494 9 Si 0.747 3.253 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.237 3.763 14 O -0.471 6.471 15 C -0.179 4.179 16 C 0.082 3.918 17 H 0.128 0.872 18 N -0.353 5.353 19 C 0.342 3.658 20 O -0.418 6.418 21 C -0.158 4.158 22 C -0.069 4.069 23 C -0.149 4.149 24 C -0.109 4.109 25 C -0.120 4.120 26 C -0.074 4.074 27 H 0.216 0.784 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.277 0.723 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.987 3.625 14.759 15.327 hybrid contribution -0.092 -0.704 -1.246 1.434 sum 1.894 2.921 13.513 13.955 Atomic orbital electron populations 1.24301 0.95412 1.02436 1.05081 1.23087 0.94305 0.98430 0.96222 1.18230 0.84386 0.93493 0.93028 1.43680 1.55314 1.05241 1.10894 1.19655 1.28628 1.09142 0.87297 0.87733 1.25324 0.94890 0.97805 0.99100 1.70094 1.17696 1.20479 1.41151 0.86010 0.79157 0.79163 0.80921 1.20273 1.21083 1.19355 1.19881 0.84683 0.83051 0.88642 1.90518 1.51737 1.41828 1.63006 1.21940 1.03946 0.94687 0.97328 1.19793 0.94882 0.91003 0.86091 0.87155 1.45967 1.35012 1.44437 1.09855 1.18310 0.81379 0.80264 0.85806 1.90774 1.30920 1.36405 1.83739 1.20540 0.99433 1.01269 0.94510 1.20856 0.98246 0.97643 0.90129 1.21099 0.97240 0.98426 0.98182 1.21299 0.96014 0.96308 0.97324 1.20348 1.00581 1.00587 0.90455 1.20578 0.95720 0.96138 0.94933 0.78407 0.87538 0.91863 0.92033 0.88799 0.89197 0.72280 0.85196 0.85223 0.85101 0.84966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.16 19.25 29.55 0.57 -4.59 16 2 C -0.12 -2.56 10.75 -37.12 -0.40 -2.95 16 3 C 0.23 4.77 4.91 -6.83 -0.03 4.74 16 4 N -0.43 -10.18 2.60 -117.94 -0.31 -10.49 16 5 C -0.32 -8.35 9.28 -14.94 -0.14 -8.49 16 6 H 0.10 2.88 7.42 -52.49 -0.39 2.49 16 7 C 0.03 0.85 4.83 -17.47 -0.08 0.77 16 8 N -0.86 -21.81 9.59 55.50 0.53 -21.28 16 9 Si 0.92 19.79 29.61 -169.99 -5.03 14.76 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.45 9.81 7.46 -10.99 -0.08 9.73 16 14 O -0.59 -14.38 14.62 5.54 0.08 -14.30 16 15 C -0.14 -2.28 4.01 -27.89 -0.11 -2.39 16 16 C 0.19 2.90 3.05 -68.90 -0.21 2.69 16 17 H 0.11 1.68 7.92 -51.93 -0.41 1.27 16 18 N -0.70 -12.19 5.73 -55.86 -0.32 -12.52 16 19 C 0.56 9.96 8.34 -12.63 -0.11 9.85 16 20 O -0.54 -11.28 18.04 5.32 0.10 -11.18 16 21 C -0.15 -2.27 6.26 -105.05 -0.66 -2.93 16 22 C -0.05 -0.60 10.10 -39.17 -0.40 -0.99 16 23 C -0.13 -1.21 10.02 -39.63 -0.40 -1.61 16 24 C -0.09 -0.79 10.05 -39.44 -0.40 -1.19 16 25 C -0.10 -1.03 10.03 -39.74 -0.40 -1.43 16 26 C -0.07 -0.95 5.67 -104.26 -0.59 -1.55 16 27 H 0.20 3.35 7.80 -54.08 -0.42 2.93 16 28 H 0.11 2.32 6.60 -51.93 -0.34 1.98 16 29 H 0.06 1.04 6.70 -51.92 -0.35 0.69 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 31 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 32 H 0.09 1.56 7.49 -51.93 -0.39 1.18 16 33 H 0.43 8.14 8.15 -40.82 -0.33 7.81 16 34 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -31.90 325.57 -7.32 -39.22 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -3.85 Total: 11.22 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -3.43 Total: -0.34 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.09 Total: -44.28 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: 0.18 Total: -25.48 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.90 -7.32 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907980014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.867 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds