Wall clock time and date at job start Fri Apr 10 2020 17:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46804 * 143.48424 * 3 2 1 5 5 C 1.37096 * 119.99970 * 263.92079 * 4 3 2 6 6 H 1.07996 * 119.99853 * 199.75651 * 5 4 3 7 7 C 1.38944 * 119.99822 * 19.75494 * 5 4 3 8 8 N 1.31420 * 120.00135 * 21.74567 * 7 5 4 9 9 Si 1.86805 * 120.00094 * 201.74484 * 7 5 4 10 10 H 1.48498 * 109.47061 * 90.00272 * 9 7 5 11 11 H 1.48499 * 109.46872 * 209.99984 * 9 7 5 12 12 H 1.48501 * 109.46772 * 330.00153 * 9 7 5 13 13 C 1.34778 * 120.00004 * 83.92640 * 4 3 2 14 14 O 1.21297 * 119.99831 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00352 * 359.97438 * 13 4 3 16 16 C 1.52994 * 109.47621 * 180.02562 * 15 13 4 17 17 H 1.09001 * 110.12477 * 306.59096 * 16 15 13 18 18 N 1.46731 * 110.09916 * 68.17821 * 16 15 13 19 19 C 1.34420 * 108.75283 * 119.19701 * 18 16 15 20 20 O 1.21549 * 124.85500 * 179.97438 * 19 18 16 21 21 C 1.47544 * 110.28897 * 0.02562 * 19 18 16 22 22 C 1.39619 * 132.34539 * 180.31457 * 21 19 18 23 23 C 1.37944 * 119.82786 * 180.16009 * 22 21 19 24 24 C 1.38391 * 120.31738 * 359.49044 * 23 22 21 25 25 C 1.38471 * 120.18931 * 0.25918 * 24 23 22 26 26 C 1.37580 * 119.95399 * 359.97438 * 25 24 23 27 27 H 4.40636 * 5.51529 * 180.02562 * 4 1 2 28 28 H 1.08992 * 109.47568 * 23.47994 * 3 2 1 29 29 H 1.09008 * 109.46931 * 263.47771 * 3 2 1 30 30 H 0.97002 * 120.00027 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47023 * 60.00000 * 15 13 4 32 32 H 1.09004 * 109.47420 * 300.00497 * 15 13 4 33 33 H 0.97001 * 125.62158 * 299.22580 * 18 16 15 34 34 H 1.08007 * 120.09039 * 359.92375 * 22 21 19 35 35 H 1.07993 * 119.84462 * 179.77223 * 23 22 21 36 36 H 1.07998 * 119.90283 * 180.28414 * 24 23 22 37 37 H 1.07993 * 120.02230 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1110 -0.8219 5 6 3.4809 0.8944 -2.1304 6 1 4.1237 1.5955 -2.6417 7 6 3.0056 -0.2273 -2.7986 8 7 1.9248 -0.8393 -2.3690 9 14 3.9027 -0.8654 -4.3078 10 1 4.9291 -1.8547 -3.8920 11 1 2.9308 -1.5155 -5.2233 12 1 4.5612 0.2668 -5.0077 13 6 3.2414 2.3454 -0.2917 14 8 3.6448 3.2648 -0.9723 15 6 2.8594 2.5837 1.1465 16 6 3.0736 4.0583 1.4936 17 1 4.0908 4.3588 1.2422 18 7 2.1079 4.8922 0.7691 19 6 1.3500 5.5511 1.6625 20 8 0.4562 6.3246 1.3791 21 6 1.7588 5.2020 3.0365 22 6 1.2897 5.6047 4.2884 23 6 1.8765 5.1074 5.4335 24 6 2.9208 4.2035 5.3473 25 6 3.3882 3.7953 4.1094 26 6 2.8131 4.2889 2.9612 27 1 -1.0502 -0.0001 0.0003 28 1 3.0098 -0.9417 -0.4094 29 1 3.0093 0.1176 1.0211 30 1 1.5928 -1.6221 -2.8358 31 1 3.4791 1.9638 1.7945 32 1 1.8104 2.3253 1.2915 33 1 2.0291 4.9570 -0.1956 34 1 0.4720 6.3066 4.3601 35 1 1.5163 5.4216 6.4019 36 1 3.3723 3.8149 6.2482 37 1 4.2035 3.0901 4.0453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907980014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:17 Heat of formation + Delta-G solvation = 16.887234 kcal Electronic energy + Delta-G solvation = -23438.801905 eV Core-core repulsion = 19954.660613 eV Total energy + Delta-G solvation = -3484.141291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.32026 -40.41302 -39.03921 -37.50320 -36.74551 -34.09373 -33.04192 -32.54342 -31.56904 -31.06559 -28.25344 -26.94659 -25.20412 -24.75652 -22.32209 -21.53720 -20.61376 -19.68722 -18.55103 -18.33018 -17.93694 -17.69996 -16.92932 -16.82590 -16.28566 -16.14311 -15.79085 -15.47186 -15.19204 -14.76857 -14.63396 -14.24236 -14.02620 -13.96116 -13.63031 -13.50349 -13.36553 -12.90771 -12.75114 -12.63896 -12.41949 -12.18047 -11.95627 -11.16739 -11.11226 -11.09275 -10.66943 -10.46443 -10.35137 -9.92207 -9.82661 -9.73483 -8.31637 -5.93462 -0.20661 0.37147 1.36514 1.43514 1.53580 1.74980 1.87522 2.13591 2.17685 2.32340 2.37751 2.84118 3.01266 3.05348 3.20084 3.45469 3.80055 3.87629 3.99156 4.07256 4.23752 4.29186 4.43697 4.47783 4.57948 4.75152 4.76107 4.84518 4.96396 5.05619 5.23950 5.40613 5.43265 5.48637 5.49693 5.76292 5.89026 5.96469 6.07474 6.43350 7.05692 7.13225 7.15356 7.42868 7.97468 8.66323 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.022456 B = 0.004109 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.606654 B = 6813.482067 C = 7005.735648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.149 4.149 3 C 0.233 3.767 4 N -0.450 5.450 5 C -0.351 4.351 6 H 0.077 0.923 7 C 0.005 3.995 8 N -0.871 5.871 9 Si 0.980 3.020 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.279 1.279 13 C 0.443 3.557 14 O -0.621 6.621 15 C -0.121 4.121 16 C 0.189 3.811 17 H 0.109 0.891 18 N -0.707 5.707 19 C 0.545 3.455 20 O -0.586 6.586 21 C -0.186 4.186 22 C -0.060 4.060 23 C -0.121 4.121 24 C -0.073 4.073 25 C -0.098 4.098 26 C -0.076 4.076 27 H 0.225 0.775 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.270 0.730 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.421 0.579 34 H 0.130 0.870 35 H 0.165 0.835 36 H 0.175 0.825 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 1.642 18.726 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.150 4.150 3 C 0.111 3.889 4 N -0.167 5.167 5 C -0.478 4.478 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.805 3.195 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.204 1.204 13 C 0.234 3.766 14 O -0.509 6.509 15 C -0.162 4.162 16 C 0.084 3.916 17 H 0.126 0.874 18 N -0.360 5.360 19 C 0.335 3.665 20 O -0.469 6.469 21 C -0.189 4.189 22 C -0.079 4.079 23 C -0.138 4.138 24 C -0.091 4.091 25 C -0.116 4.116 26 C -0.078 4.078 27 H 0.242 0.758 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.153 0.847 32 H 0.103 0.897 33 H 0.261 0.739 34 H 0.148 0.852 35 H 0.183 0.817 36 H 0.192 0.808 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.859 2.265 18.229 18.590 hybrid contribution -0.370 -0.247 -2.238 2.282 sum 2.489 2.018 15.990 16.308 Atomic orbital electron populations 1.25087 0.96425 1.01415 1.04214 1.23507 0.95099 0.99366 0.97073 1.18360 0.84130 0.91822 0.94617 1.43871 1.55771 1.06614 1.10465 1.19538 1.29546 1.09658 0.89067 0.90547 1.25937 0.95216 0.97425 1.01348 1.70184 1.18115 1.20499 1.42018 0.85135 0.78243 0.78323 0.77827 1.18725 1.20887 1.20368 1.20812 0.83032 0.82143 0.90659 1.90493 1.52889 1.42883 1.64599 1.21848 1.04078 0.96259 0.93986 1.19843 0.94150 0.89782 0.87850 0.87384 1.46142 1.35562 1.44838 1.09438 1.18988 0.80582 0.79401 0.87559 1.90717 1.32947 1.38482 1.84764 1.20383 1.01434 1.03724 0.93382 1.21083 0.98699 0.98041 0.90097 1.21534 0.96546 0.97345 0.98410 1.21845 0.94627 0.94461 0.98143 1.20782 1.00729 1.00403 0.89692 1.20455 0.96169 0.96972 0.94172 0.75787 0.89153 0.87425 0.91962 0.84661 0.89749 0.73850 0.85225 0.81706 0.80801 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.04 19.25 74.32 1.43 -8.61 16 2 C -0.15 -6.30 10.75 31.13 0.33 -5.97 16 3 C 0.23 9.42 4.91 84.57 0.42 9.84 16 4 N -0.45 -21.35 2.60 -645.42 -1.68 -23.03 16 5 C -0.35 -18.84 9.28 84.04 0.78 -18.06 16 6 H 0.08 4.44 7.42 -2.91 -0.02 4.42 16 7 C 0.00 0.23 4.83 84.92 0.41 0.64 16 8 N -0.87 -44.52 9.59 21.66 0.21 -44.32 16 9 Si 0.98 41.07 29.61 68.60 2.03 43.10 16 10 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.44 19.64 7.46 87.66 0.65 20.30 16 14 O -0.62 -31.77 14.62 -3.08 -0.05 -31.81 16 15 C -0.12 -3.86 4.01 29.84 0.12 -3.74 16 16 C 0.19 5.77 3.05 44.24 0.14 5.90 16 17 H 0.11 3.29 7.92 -2.39 -0.02 3.28 16 18 N -0.71 -26.04 5.73 -449.13 -2.57 -28.61 16 19 C 0.55 20.52 8.34 86.75 0.72 21.24 16 20 O -0.59 -26.13 18.04 -3.87 -0.07 -26.20 16 21 C -0.19 -5.39 6.26 -20.14 -0.13 -5.51 16 22 C -0.06 -1.33 10.10 22.53 0.23 -1.10 16 23 C -0.12 -1.67 10.02 22.24 0.22 -1.45 16 24 C -0.07 -0.83 10.05 22.36 0.22 -0.61 16 25 C -0.10 -1.54 10.03 22.17 0.22 -1.32 16 26 C -0.08 -1.86 5.67 -19.63 -0.11 -1.97 16 27 H 0.23 7.22 7.80 -4.41 -0.03 7.19 16 28 H 0.09 3.92 6.60 -2.39 -0.02 3.91 16 29 H 0.11 3.26 6.70 -2.38 -0.02 3.25 16 30 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 31 H 0.14 3.14 7.42 -2.39 -0.02 3.12 16 32 H 0.08 2.85 7.49 -2.39 -0.02 2.83 16 33 H 0.42 17.10 8.15 -92.71 -0.76 16.34 16 34 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 36 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -74.30 325.57 3.90 -70.40 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.36 Total: 30.88 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.66 Total: 9.58 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -4.04 Total: -95.96 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -0.11 Total: -58.01 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -74.30 3.90 -70.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907980014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.291 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds