Wall clock time and date at job start Fri Apr 10 2020 17:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48495 * 109.46890 * 240.00257 * 3 2 1 5 5 H 1.48505 * 109.46887 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47267 * 120.00168 * 3 2 1 7 7 C 1.40118 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.40816 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.33908 * 120.27629 * 359.97047 * 9 7 2 11 11 C 1.31718 * 119.89621 * 180.02562 * 10 9 7 12 12 C 1.38975 * 120.47247 * 0.02562 * 11 10 9 13 13 N 1.32239 * 120.56806 * 0.02562 * 12 11 10 14 14 C 1.32611 * 120.09150 * 359.97438 * 13 12 11 15 15 N 1.37935 * 120.23957 * 179.97438 * 14 13 12 16 16 C 1.46495 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.53940 * 113.73286 * 253.76691 * 16 15 14 18 18 N 1.48194 * 86.09878 * 221.95304 * 17 16 15 19 19 C 1.38412 * 111.06587 * 137.51853 * 18 17 16 20 20 N 1.32491 * 119.21679 * 260.29629 * 19 18 17 21 21 C 1.32276 * 120.73964 * 179.72042 * 20 19 18 22 22 C 1.38607 * 119.19482 * 0.54268 * 21 20 19 23 23 C 1.38601 * 118.55893 * 359.73665 * 22 21 20 24 24 N 1.32279 * 119.19774 * 359.97438 * 23 22 21 25 25 C 1.47958 * 90.79818 * 24.60330 * 18 17 16 26 26 H 0.97003 * 120.00359 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.76299 * 180.28338 * 11 10 9 28 28 H 1.07998 * 119.70997 * 179.97438 * 12 11 10 29 29 H 0.97005 * 120.00125 * 179.97438 * 15 14 13 30 30 H 1.09004 * 112.93922 * 25.33384 * 16 15 14 31 31 H 1.08999 * 113.75690 * 336.23471 * 17 16 15 32 32 H 1.08998 * 113.76117 * 107.60246 * 17 16 15 33 33 H 1.07995 * 120.40562 * 180.30338 * 21 20 19 34 34 H 1.08006 * 120.71975 * 179.74862 * 22 21 20 35 35 H 1.08004 * 120.39955 * 179.97438 * 23 22 21 36 36 H 1.09008 * 113.75663 * 221.08190 * 25 18 17 37 37 H 1.08997 * 113.86669 * 89.73005 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0949 1.6964 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0950 1.6965 1.2124 7 6 2.0079 -1.2135 -0.0005 8 1 3.0879 -1.2134 -0.0010 9 6 1.3038 -2.4330 -0.0016 10 7 -0.0352 -2.4395 -0.0016 11 6 -0.6862 -3.5845 -0.0021 12 6 0.0067 -4.7892 -0.0022 13 7 1.3290 -4.8044 -0.0012 14 6 2.0071 -3.6648 -0.0007 15 7 3.3864 -3.6771 0.0008 16 6 4.1075 -4.9522 0.0013 17 6 4.7539 -5.2980 1.3550 18 7 5.9262 -5.7450 0.5663 19 6 7.1085 -5.3256 1.1511 20 7 7.7207 -4.2519 0.6739 21 6 8.8492 -3.8213 1.2133 22 6 9.3952 -4.5144 2.2822 23 6 8.7317 -5.6367 2.7527 24 7 7.6037 -6.0103 2.1716 25 6 5.5414 -4.8534 -0.5499 26 1 -0.4851 0.8400 0.0004 27 1 -1.7662 -3.5872 -0.0067 28 1 -0.5395 -5.7209 -0.0022 29 1 3.8789 -2.8414 0.0008 30 1 3.5274 -5.7685 -0.4291 31 1 4.9520 -4.4285 1.9818 32 1 4.2499 -6.1031 1.8894 33 1 9.3411 -2.9426 0.8231 34 1 10.3177 -4.1870 2.7387 35 1 9.1309 -6.1992 3.5838 36 1 5.6653 -5.3040 -1.5347 37 1 5.9695 -3.8533 -0.4832 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170122710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:07 Heat of formation + Delta-G solvation = 142.161201 kcal Electronic energy + Delta-G solvation = -22963.194313 eV Core-core repulsion = 19549.070811 eV Total energy + Delta-G solvation = -3414.123502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.57535 -40.95276 -40.21617 -36.02800 -35.82541 -34.75315 -33.44338 -32.90376 -30.80267 -28.34662 -27.73695 -27.46791 -25.28973 -24.50986 -23.63616 -23.02400 -21.06722 -19.47690 -19.01563 -18.58957 -18.35671 -17.62150 -16.83864 -16.69266 -16.46508 -15.95011 -15.81002 -15.66616 -15.09199 -14.79407 -14.57192 -14.44875 -14.14241 -13.78428 -13.73410 -13.21548 -12.95742 -12.66740 -12.42936 -12.10678 -11.98160 -11.96514 -11.89789 -11.63890 -11.29683 -11.22016 -11.15076 -10.41404 -10.23698 -9.78237 -9.22461 -8.63613 -8.25780 -6.33340 -0.13613 0.15538 0.81857 1.25663 1.43062 1.54932 1.57322 2.11772 2.22885 2.66722 2.79343 2.88905 3.07816 3.38011 3.59901 3.77399 3.94723 3.99638 4.08854 4.23120 4.25397 4.30281 4.33884 4.39414 4.52985 4.61415 4.70852 4.75172 4.90210 4.96767 5.07538 5.13727 5.24121 5.34485 5.70653 5.82893 6.11988 6.19068 6.29819 6.65946 6.77504 6.99857 7.08801 7.60393 8.10543 8.43974 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.004266 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.203367 B = 6562.195068 C = 8059.761458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.023 3.977 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.445 4.445 8 H 0.098 0.902 9 C 0.162 3.838 10 N -0.485 5.485 11 C 0.010 3.990 12 C -0.082 4.082 13 N -0.507 5.507 14 C 0.256 3.744 15 N -0.701 5.701 16 C 0.148 3.852 17 C 0.022 3.978 18 N -0.428 5.428 19 C 0.441 3.559 20 N -0.566 5.566 21 C 0.152 3.848 22 C -0.232 4.232 23 C 0.151 3.849 24 N -0.547 5.547 25 C 0.022 3.978 26 H 0.280 0.720 27 H 0.145 0.855 28 H 0.155 0.845 29 H 0.407 0.593 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.201 0.799 34 H 0.191 0.809 35 H 0.203 0.797 36 H 0.108 0.892 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.158 -3.105 3.655 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.199 4.199 3 Si 0.806 3.194 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.116 0.884 9 C 0.027 3.973 10 N -0.204 5.204 11 C -0.152 4.152 12 C -0.236 4.236 13 N -0.228 5.228 14 C 0.009 3.991 15 N -0.340 5.340 16 C 0.040 3.960 17 C -0.107 4.107 18 N -0.150 5.150 19 C 0.085 3.915 20 N -0.285 5.285 21 C -0.014 4.014 22 C -0.254 4.254 23 C -0.015 4.015 24 N -0.265 5.265 25 C -0.107 4.107 26 H 0.090 0.910 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.246 0.754 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.218 0.782 34 H 0.208 0.792 35 H 0.220 0.780 36 H 0.126 0.874 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.060 -4.237 3.107 17.851 hybrid contribution 0.704 1.627 0.560 1.859 sum 17.764 -2.610 3.667 18.326 Atomic orbital electron populations 1.70200 1.09044 1.29329 1.29223 1.26967 0.95648 1.04486 0.92760 0.85204 0.78602 0.75412 0.80217 1.17902 1.19730 1.18208 1.19624 0.94747 0.89767 1.43827 0.88399 1.19480 0.89706 0.92570 0.95507 1.69427 1.07197 1.26245 1.17516 1.23555 1.00859 0.90178 1.00610 1.22764 0.89616 0.98488 1.12712 1.67388 1.09362 1.28153 1.17929 1.19437 0.86465 0.90573 1.02589 1.43677 1.00748 1.07142 1.82438 1.22505 0.91438 0.88079 0.94013 1.24465 0.88619 0.99602 0.98015 1.65468 0.98524 1.43789 1.07173 1.21867 0.94294 0.86442 0.88904 1.68374 1.12872 1.13586 1.33659 1.23836 0.88682 0.98109 0.90728 1.23255 1.04545 0.98142 0.99476 1.23890 0.87653 0.93496 0.96474 1.68079 1.15418 1.32266 1.10697 1.24392 0.92535 0.98168 0.95637 0.90959 0.83772 0.82806 0.75446 0.87430 0.91698 0.88613 0.78186 0.79195 0.78043 0.87413 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -40.02 11.48 21.86 0.25 -39.77 16 2 C 0.02 1.15 5.50 85.31 0.47 1.62 16 3 Si 0.99 36.20 29.56 68.60 2.03 38.23 16 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 6 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 7 C -0.45 -22.65 8.89 23.36 0.21 -22.45 16 8 H 0.10 4.42 6.12 -2.91 -0.02 4.41 16 9 C 0.16 8.74 6.56 40.35 0.26 9.01 16 10 N -0.49 -27.26 8.03 -188.05 -1.51 -28.77 16 11 C 0.01 0.49 11.21 84.89 0.95 1.44 16 12 C -0.08 -3.79 11.22 84.81 0.95 -2.84 16 13 N -0.51 -24.36 9.29 -190.82 -1.77 -26.13 16 14 C 0.26 12.47 7.51 134.04 1.01 13.47 16 15 N -0.70 -27.92 5.42 -326.48 -1.77 -29.69 16 16 C 0.15 5.06 4.42 46.56 0.21 5.26 16 17 C 0.02 0.72 7.75 86.37 0.67 1.39 16 18 N -0.43 -13.28 6.34 -719.59 -4.56 -17.84 16 19 C 0.44 12.96 6.79 261.49 1.77 14.74 16 20 N -0.57 -14.58 8.21 -197.99 -1.63 -16.20 16 21 C 0.15 2.59 11.30 84.71 0.96 3.55 16 22 C -0.23 -2.95 10.16 22.44 0.23 -2.73 16 23 C 0.15 2.62 11.30 84.71 0.96 3.57 16 24 N -0.55 -14.91 10.47 -197.98 -2.07 -16.99 16 25 C 0.02 0.63 7.38 86.41 0.64 1.27 16 26 H 0.28 13.47 8.29 -92.71 -0.77 12.70 16 27 H 0.14 6.24 8.06 -2.91 -0.02 6.22 16 28 H 0.15 5.99 8.06 -2.91 -0.02 5.97 16 29 H 0.41 15.43 6.69 -92.70 -0.62 14.81 16 30 H 0.11 3.99 7.46 -2.39 -0.02 3.98 16 31 H 0.06 2.19 7.91 -2.39 -0.02 2.17 16 32 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.20 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 37 H 0.11 3.05 6.61 -2.39 -0.02 3.04 16 Total: -1.00 -70.60 319.78 -1.25 -71.85 By element: Atomic # 1 Polarization: 37.49 SS G_CDS: 0.50 Total: 38.00 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: 9.28 Total: 27.31 kcal Atomic # 7 Polarization: -162.32 SS G_CDS: -13.06 Total: -175.38 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Total: -70.60 -1.25 -71.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170122710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.010 kcal (2) G-P(sol) polarization free energy of solvation -70.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds