Wall clock time and date at job start Fri Apr 10 2020 17:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48497 * 109.47501 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46978 * 300.00107 * 3 2 1 6 6 H 1.48502 * 109.47165 * 59.99606 * 3 2 1 7 7 C 1.40049 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99393 * 180.02562 * 7 2 1 9 9 C 1.41140 * 120.00019 * 0.02562 * 7 2 1 10 10 N 1.33602 * 119.17215 * 179.97438 * 9 7 2 11 11 C 1.31655 * 120.79337 * 179.97438 * 10 9 7 12 12 C 1.40091 * 119.13925 * 0.02562 * 11 10 9 13 13 N 1.38806 * 120.75706 * 180.02562 * 12 11 10 14 14 C 1.46494 * 119.99603 * 180.02562 * 13 12 11 15 15 C 1.53517 * 114.16882 * 204.99976 * 14 13 12 16 16 N 1.47479 * 87.99753 * 220.35526 * 15 14 13 17 17 C 1.38407 * 110.99818 * 138.66897 * 16 15 14 18 18 N 1.32493 * 119.22026 * 359.73721 * 17 16 15 19 19 C 1.32270 * 120.74023 * 179.71883 * 18 17 16 20 20 C 1.38607 * 119.20019 * 0.53582 * 19 18 17 21 21 C 1.38607 * 118.55412 * 359.73667 * 20 19 18 22 22 N 1.32272 * 119.19858 * 0.02562 * 21 20 19 23 23 C 1.47487 * 87.83637 * 26.97912 * 16 15 14 24 24 C 1.40081 * 118.48077 * 0.27380 * 12 11 10 25 25 N 1.31664 * 119.13782 * 359.46593 * 24 12 11 26 26 H 0.96993 * 120.00284 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.43051 * 179.97438 * 11 10 9 28 28 H 0.97002 * 120.00027 * 359.97438 * 13 12 11 29 29 H 1.09000 * 113.38305 * 338.07248 * 14 13 12 30 30 H 1.09002 * 113.47888 * 105.55885 * 15 14 13 31 31 H 1.09003 * 113.47419 * 335.15218 * 15 14 13 32 32 H 1.07998 * 120.40008 * 180.29529 * 19 18 17 33 33 H 1.08001 * 120.72513 * 179.75256 * 20 19 18 34 34 H 1.08006 * 120.40140 * 179.97438 * 21 20 19 35 35 H 1.09004 * 113.47787 * 87.75324 * 23 16 15 36 36 H 1.09001 * 113.47615 * 218.16496 * 23 16 15 37 37 H 1.07999 * 120.43169 * 179.72419 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3018 -2.4352 0.0005 10 7 1.9865 -3.5824 0.0005 11 6 1.3607 -4.7408 0.0010 12 6 -0.0401 -4.7593 0.0010 13 7 -0.7340 -5.9615 0.0021 14 6 -2.1990 -5.9615 0.0015 15 6 -2.8278 -7.2302 0.5946 16 7 -3.8309 -7.1753 -0.4851 17 6 -4.0847 -8.4384 -0.9909 18 7 -3.4383 -9.4791 -0.4864 19 6 -3.6616 -10.7001 -0.9434 20 6 -4.5758 -10.8814 -1.9693 21 6 -5.2302 -9.7704 -2.4777 22 7 -4.9641 -8.5774 -1.9722 23 6 -2.8284 -6.4694 -1.3047 24 6 -0.7243 -3.5371 -0.0054 25 7 -0.0341 -2.4159 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 1.9201 -5.6647 0.0006 28 1 -0.2490 -6.8015 0.0025 29 1 -2.6317 -5.0329 0.3739 30 1 -3.2506 -7.0816 1.5882 31 1 -2.1778 -8.1035 0.5394 32 1 -3.1351 -11.5450 -0.5248 33 1 -4.7741 -11.8671 -2.3639 34 1 -5.9481 -9.8773 -3.2775 35 1 -2.1779 -7.1391 -1.8672 36 1 -3.2520 -5.6767 -1.9214 37 1 -1.8041 -3.5146 -0.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170132699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:10 Heat of formation + Delta-G solvation = 171.403879 kcal Electronic energy + Delta-G solvation = -22417.078303 eV Core-core repulsion = 19004.222858 eV Total energy + Delta-G solvation = -3412.855444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82826 -39.78723 -38.78173 -34.93534 -34.02263 -33.35651 -32.03892 -31.71843 -29.24726 -27.52069 -26.31701 -25.19947 -24.54856 -23.43198 -22.68144 -21.31592 -19.86426 -18.09079 -17.82865 -17.77663 -16.57085 -16.27805 -15.86998 -15.41866 -15.19755 -14.87020 -14.66125 -14.28382 -13.87856 -13.77635 -13.24771 -13.12437 -12.65383 -12.63973 -11.99793 -11.51149 -11.26559 -11.20709 -11.17646 -11.15677 -11.10010 -10.56472 -10.36139 -10.15580 -9.82393 -9.53032 -9.39903 -9.19680 -8.99436 -8.90253 -7.26301 -6.82842 -6.41061 -4.38631 0.56331 0.79303 2.71302 2.91756 3.06511 3.13992 3.18322 3.19974 3.41215 3.78275 3.99649 4.17149 4.28090 4.38662 4.56070 4.72259 4.78434 4.80131 5.02463 5.17571 5.21906 5.44946 5.63103 5.68812 5.76890 5.85991 5.88549 5.97392 6.00270 6.12466 6.27244 6.43978 6.52851 6.96231 7.08516 7.15291 7.36997 7.83075 8.08249 8.27613 8.44956 8.56840 8.74202 9.21136 10.23763 10.39419 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.040979 B = 0.002674 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.114662 B =10468.973842 C =10848.848890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.411 4.411 8 H 0.089 0.911 9 C 0.370 3.630 10 N -0.568 5.568 11 C 0.108 3.892 12 C -0.048 4.048 13 N -0.731 5.731 14 C 0.150 3.850 15 C 0.000 4.000 16 N -0.413 5.413 17 C 0.468 3.532 18 N -0.546 5.546 19 C 0.166 3.834 20 C -0.254 4.254 21 C 0.165 3.835 22 N -0.512 5.512 23 C 0.000 4.000 24 C 0.106 3.894 25 N -0.476 5.476 26 H 0.272 0.728 27 H 0.126 0.874 28 H 0.388 0.612 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.331 -18.199 -2.768 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.157 4.157 3 Si 0.738 3.262 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.448 4.448 8 H 0.107 0.893 9 C 0.129 3.871 10 N -0.287 5.287 11 C -0.067 4.067 12 C -0.153 4.153 13 N -0.366 5.366 14 C 0.040 3.960 15 C -0.130 4.130 16 N -0.134 5.134 17 C 0.112 3.888 18 N -0.264 5.264 19 C -0.001 4.001 20 C -0.277 4.277 21 C -0.002 4.002 22 N -0.228 5.228 23 C -0.129 4.129 24 C -0.071 4.071 25 N -0.193 5.193 26 H 0.083 0.917 27 H 0.143 0.857 28 H 0.221 0.779 29 H 0.138 0.862 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.186 0.814 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.587 -15.768 -2.288 18.594 hybrid contribution 0.157 -2.058 -0.575 2.143 sum -9.429 -17.826 -2.862 20.368 Atomic orbital electron populations 1.70145 1.07117 1.27641 1.29748 1.26018 0.94953 1.01085 0.93687 0.86166 0.80816 0.80774 0.78423 1.18338 1.19901 1.19898 1.19146 0.94529 0.87638 1.43474 0.89262 1.19824 0.85616 0.90726 0.90889 1.68561 1.40448 0.98107 1.21605 1.22182 0.89083 0.96365 0.99031 1.19171 0.93424 0.87546 1.15129 1.43410 1.02099 1.04990 1.86119 1.22122 0.82488 0.98304 0.93135 1.24425 0.92698 0.99712 0.96163 1.65922 1.31633 1.07823 1.08028 1.21920 0.87820 0.91456 0.87564 1.68419 1.25915 1.00396 1.31683 1.23127 0.92118 0.94195 0.90664 1.22820 1.01859 1.01843 1.01175 1.23221 0.94598 0.86836 0.95591 1.68123 1.16039 1.26962 1.11719 1.24664 0.91113 0.98154 0.98984 1.22753 0.99046 0.87289 0.98045 1.69300 1.08394 1.25733 1.15846 0.91728 0.85675 0.77878 0.86226 0.88785 0.87928 0.81433 0.83454 0.81227 0.90937 0.88351 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.38 11.41 55.55 0.63 -18.74 16 2 C 0.07 1.75 5.50 -17.34 -0.10 1.66 16 3 Si 0.91 19.01 29.56 -169.99 -5.02 13.99 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.41 -11.47 9.35 -37.80 -0.35 -11.83 16 8 H 0.09 2.41 7.85 -52.49 -0.41 2.00 16 9 C 0.37 10.51 7.35 -158.22 -1.16 9.34 16 10 N -0.57 -15.02 10.34 -12.49 -0.13 -15.15 16 11 C 0.11 2.40 11.20 -16.93 -0.19 2.21 16 12 C -0.05 -1.00 6.72 -83.32 -0.56 -1.56 16 13 N -0.73 -11.54 5.54 -51.40 -0.28 -11.83 16 14 C 0.15 2.10 4.44 -67.61 -0.30 1.80 16 15 C 0.00 0.00 7.14 -7.54 -0.05 -0.06 16 16 N -0.41 -5.70 6.51 -184.69 -1.20 -6.90 16 17 C 0.47 6.28 6.78 -322.80 -2.19 4.10 16 18 N -0.55 -6.44 8.20 -13.93 -0.11 -6.56 16 19 C 0.17 1.39 11.30 -17.23 -0.19 1.19 16 20 C -0.25 -1.75 10.16 -39.31 -0.40 -2.15 16 21 C 0.17 1.45 11.30 -17.23 -0.19 1.25 16 22 N -0.51 -6.59 10.47 -13.93 -0.15 -6.73 16 23 C 0.00 0.00 7.48 -7.47 -0.06 -0.05 16 24 C 0.11 2.46 10.53 -16.93 -0.18 2.28 16 25 N -0.48 -13.12 7.84 -12.49 -0.10 -13.21 16 26 H 0.27 6.56 8.29 -40.82 -0.34 6.23 16 27 H 0.13 2.34 8.06 -52.48 -0.42 1.92 16 28 H 0.39 5.40 8.78 -40.82 -0.36 5.04 16 29 H 0.12 1.77 6.15 -51.93 -0.32 1.45 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.27 6.61 -51.93 -0.34 0.92 16 32 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 34 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 36 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.13 2.63 6.16 -52.49 -0.32 2.31 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -33.05 320.67 -11.30 -44.34 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.84 Total: 7.79 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -5.93 Total: 8.18 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -1.34 Total: -79.13 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.05 -11.30 -44.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170132699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.748 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds