Wall clock time and date at job start Fri Apr 10 2020 17:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48497 * 109.47501 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46978 * 300.00107 * 3 2 1 6 6 H 1.48502 * 109.47165 * 59.99606 * 3 2 1 7 7 C 1.40049 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99393 * 180.02562 * 7 2 1 9 9 C 1.41140 * 120.00019 * 0.02562 * 7 2 1 10 10 N 1.33602 * 119.17215 * 179.97438 * 9 7 2 11 11 C 1.31655 * 120.79337 * 179.97438 * 10 9 7 12 12 C 1.40091 * 119.13925 * 0.02562 * 11 10 9 13 13 N 1.38806 * 120.75706 * 180.02562 * 12 11 10 14 14 C 1.46494 * 119.99603 * 180.02562 * 13 12 11 15 15 C 1.53517 * 114.16882 * 204.99976 * 14 13 12 16 16 N 1.47479 * 87.99753 * 220.35526 * 15 14 13 17 17 C 1.38407 * 110.99818 * 138.66897 * 16 15 14 18 18 N 1.32493 * 119.22026 * 359.73721 * 17 16 15 19 19 C 1.32270 * 120.74023 * 179.71883 * 18 17 16 20 20 C 1.38607 * 119.20019 * 0.53582 * 19 18 17 21 21 C 1.38607 * 118.55412 * 359.73667 * 20 19 18 22 22 N 1.32272 * 119.19858 * 0.02562 * 21 20 19 23 23 C 1.47487 * 87.83637 * 26.97912 * 16 15 14 24 24 C 1.40081 * 118.48077 * 0.27380 * 12 11 10 25 25 N 1.31664 * 119.13782 * 359.46593 * 24 12 11 26 26 H 0.96993 * 120.00284 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.43051 * 179.97438 * 11 10 9 28 28 H 0.97002 * 120.00027 * 359.97438 * 13 12 11 29 29 H 1.09000 * 113.38305 * 338.07248 * 14 13 12 30 30 H 1.09002 * 113.47888 * 105.55885 * 15 14 13 31 31 H 1.09003 * 113.47419 * 335.15218 * 15 14 13 32 32 H 1.07998 * 120.40008 * 180.29529 * 19 18 17 33 33 H 1.08001 * 120.72513 * 179.75256 * 20 19 18 34 34 H 1.08006 * 120.40140 * 179.97438 * 21 20 19 35 35 H 1.09004 * 113.47787 * 87.75324 * 23 16 15 36 36 H 1.09001 * 113.47615 * 218.16496 * 23 16 15 37 37 H 1.07999 * 120.43169 * 179.72419 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0075 -1.2129 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3018 -2.4352 0.0005 10 7 1.9865 -3.5824 0.0005 11 6 1.3607 -4.7408 0.0010 12 6 -0.0401 -4.7593 0.0010 13 7 -0.7340 -5.9615 0.0021 14 6 -2.1990 -5.9615 0.0015 15 6 -2.8278 -7.2302 0.5946 16 7 -3.8309 -7.1753 -0.4851 17 6 -4.0847 -8.4384 -0.9909 18 7 -3.4383 -9.4791 -0.4864 19 6 -3.6616 -10.7001 -0.9434 20 6 -4.5758 -10.8814 -1.9693 21 6 -5.2302 -9.7704 -2.4777 22 7 -4.9641 -8.5774 -1.9722 23 6 -2.8284 -6.4694 -1.3047 24 6 -0.7243 -3.5371 -0.0054 25 7 -0.0341 -2.4159 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 1.9201 -5.6647 0.0006 28 1 -0.2490 -6.8015 0.0025 29 1 -2.6317 -5.0329 0.3739 30 1 -3.2506 -7.0816 1.5882 31 1 -2.1778 -8.1035 0.5394 32 1 -3.1351 -11.5450 -0.5248 33 1 -4.7741 -11.8671 -2.3639 34 1 -5.9481 -9.8773 -3.2775 35 1 -2.1779 -7.1391 -1.8672 36 1 -3.2520 -5.6767 -1.9214 37 1 -1.8041 -3.5146 -0.0101 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170132699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:09 Heat of formation + Delta-G solvation = 147.617677 kcal Electronic energy + Delta-G solvation = -22418.109750 eV Core-core repulsion = 19004.222858 eV Total energy + Delta-G solvation = -3413.886891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.70600 -41.00675 -40.37310 -36.48429 -35.11832 -34.77414 -33.64813 -32.98701 -30.85649 -28.82402 -27.32937 -26.87738 -25.30378 -25.01575 -23.94205 -22.94480 -21.10586 -19.71074 -19.04797 -18.59229 -18.09362 -17.49632 -17.03381 -16.72923 -16.50198 -16.03363 -15.94313 -15.69177 -15.06949 -14.68145 -14.58448 -14.42704 -14.40705 -13.77447 -13.62572 -12.96198 -12.95626 -12.67840 -12.55194 -12.25812 -11.97881 -11.92990 -11.87002 -11.41712 -11.33533 -11.18128 -11.12520 -10.70594 -10.27324 -9.83953 -9.19920 -8.52612 -8.29929 -6.32885 -0.16599 0.12899 0.87512 1.05122 1.44315 1.54249 1.60716 2.14471 2.28282 2.65452 2.85327 2.87270 3.04973 3.41044 3.53735 3.75371 3.86889 4.01592 4.02993 4.10363 4.15846 4.20785 4.28565 4.36621 4.38078 4.57459 4.68097 4.72652 4.74862 4.87384 4.95482 5.19561 5.30556 5.37172 5.58287 5.69419 6.16331 6.25822 6.48737 6.60557 6.80795 7.02477 7.06174 7.33975 8.32033 8.52190 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.040979 B = 0.002674 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.114662 B =10468.973842 C =10848.848890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.025 3.975 3 Si 0.994 3.006 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.339 3.661 10 N -0.591 5.591 11 C 0.091 3.909 12 C -0.010 4.010 13 N -0.716 5.716 14 C 0.144 3.856 15 C 0.016 3.984 16 N -0.426 5.426 17 C 0.440 3.560 18 N -0.562 5.562 19 C 0.153 3.847 20 C -0.230 4.230 21 C 0.150 3.850 22 N -0.547 5.547 23 C 0.009 3.991 24 C 0.081 3.919 25 N -0.508 5.508 26 H 0.279 0.721 27 H 0.164 0.836 28 H 0.402 0.598 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.203 0.797 33 H 0.190 0.810 34 H 0.201 0.799 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.007 -20.829 -3.148 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.196 4.196 3 Si 0.814 3.186 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.492 4.492 8 H 0.100 0.900 9 C 0.096 3.904 10 N -0.310 5.310 11 C -0.082 4.082 12 C -0.116 4.116 13 N -0.351 5.351 14 C 0.035 3.965 15 C -0.113 4.113 16 N -0.148 5.148 17 C 0.084 3.916 18 N -0.281 5.281 19 C -0.013 4.013 20 C -0.252 4.252 21 C -0.016 4.016 22 N -0.264 5.264 23 C -0.120 4.120 24 C -0.094 4.094 25 N -0.225 5.225 26 H 0.089 0.911 27 H 0.181 0.819 28 H 0.238 0.762 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.220 0.780 33 H 0.208 0.792 34 H 0.218 0.782 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.322 -18.518 -2.676 21.369 hybrid contribution 0.198 -1.678 -0.515 1.766 sum -10.124 -20.196 -3.191 22.816 Atomic orbital electron populations 1.70221 1.08640 1.28982 1.30792 1.26905 0.95840 1.04262 0.92604 0.84998 0.79100 0.75656 0.78896 1.18186 1.18889 1.18864 1.19387 0.94433 0.89021 1.46403 0.90016 1.20124 0.86307 0.91613 0.92360 1.68545 1.41297 0.98915 1.22212 1.22808 0.90114 0.96591 0.98732 1.19128 0.93192 0.88494 1.10780 1.43387 1.02974 1.03884 1.84818 1.22194 0.81032 0.99035 0.94200 1.24265 0.92336 0.98490 0.96216 1.65893 1.31638 1.09099 1.08123 1.21847 0.89305 0.91511 0.88974 1.68374 1.26258 1.01313 1.32178 1.23844 0.92588 0.93899 0.90980 1.23274 0.99478 1.03086 0.99347 1.23881 0.95274 0.86294 0.96165 1.68074 1.16654 1.29369 1.12302 1.24459 0.91231 0.97987 0.98336 1.23142 1.00028 0.87541 0.98738 1.69218 1.08418 1.27822 1.17028 0.91061 0.81859 0.76195 0.87013 0.88180 0.87359 0.78027 0.79236 0.78220 0.91103 0.89110 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.21 11.41 21.84 0.25 -41.96 16 2 C 0.03 1.34 5.50 85.30 0.47 1.81 16 3 Si 0.99 39.95 29.56 68.60 2.03 41.98 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.46 -26.52 9.35 23.42 0.22 -26.30 16 8 H 0.08 4.65 7.85 -2.91 -0.02 4.62 16 9 C 0.34 19.98 7.35 134.95 0.99 20.97 16 10 N -0.59 -31.86 10.34 -193.42 -2.00 -33.86 16 11 C 0.09 4.01 11.20 85.17 0.95 4.96 16 12 C -0.01 -0.41 6.72 38.94 0.26 -0.15 16 13 N -0.72 -21.45 5.54 -316.55 -1.75 -23.20 16 14 C 0.14 3.92 4.44 45.47 0.20 4.12 16 15 C 0.02 0.39 7.14 83.58 0.60 0.98 16 16 N -0.43 -11.48 6.51 -738.23 -4.81 -16.29 16 17 C 0.44 11.30 6.78 261.49 1.77 13.08 16 18 N -0.56 -12.12 8.20 -197.99 -1.62 -13.74 16 19 C 0.15 2.04 11.30 84.71 0.96 3.00 16 20 C -0.23 -2.26 10.16 22.45 0.23 -2.03 16 21 C 0.15 2.22 11.30 84.71 0.96 3.18 16 22 N -0.55 -13.40 10.47 -197.98 -2.07 -15.47 16 23 C 0.01 0.25 7.48 83.62 0.63 0.88 16 24 C 0.08 3.82 10.53 85.17 0.90 4.72 16 25 N -0.51 -28.94 7.84 -193.42 -1.52 -30.45 16 26 H 0.28 13.85 8.29 -92.71 -0.77 13.08 16 27 H 0.16 5.76 8.06 -2.91 -0.02 5.73 16 28 H 0.40 10.18 8.78 -92.71 -0.81 9.37 16 29 H 0.11 3.27 6.15 -2.39 -0.01 3.26 16 30 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.11 2.47 6.61 -2.39 -0.02 2.45 16 32 H 0.20 1.11 8.06 -2.91 -0.02 1.08 16 33 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16 34 H 0.20 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.07 1.91 7.89 -2.39 -0.02 1.89 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.15 6.15 6.16 -2.91 -0.02 6.13 16 Total: -1.00 -75.95 320.67 -2.05 -78.00 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.32 Total: 25.79 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 9.13 Total: 29.21 kcal Atomic # 7 Polarization: -161.45 SS G_CDS: -13.52 Total: -174.98 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -75.95 -2.05 -78.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170132699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.622 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds