Wall clock time and date at job start Fri Apr 10 2020 17:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00233 * 2 1 4 4 H 1.48498 * 109.47150 * 240.00096 * 3 2 1 5 5 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47563 * 120.00061 * 3 2 1 7 7 C 1.38815 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00100 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00313 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47241 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46927 * 179.97438 * 11 10 9 13 13 C 1.53008 * 109.46807 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.46808 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46929 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.47237 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99969 * 179.72043 * 16 15 14 18 18 O 1.21609 * 120.00089 * 0.02562 * 17 16 15 19 19 C 1.47446 * 119.99860 * 180.02562 * 17 16 15 20 20 C 1.37982 * 124.15629 * 180.02562 * 19 17 16 21 21 S 1.72104 * 104.03770 * 179.97438 * 20 19 17 22 22 N 1.56409 * 96.14957 * 0.02562 * 21 20 19 23 23 N 1.27417 * 109.87901 * 359.74189 * 22 21 20 24 24 H 0.97000 * 120.00324 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99881 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47001 * 59.99782 * 10 9 7 27 27 H 1.08994 * 109.47269 * 300.00188 * 10 9 7 28 28 H 1.08996 * 109.46904 * 60.00699 * 11 10 9 29 29 H 1.08994 * 109.47339 * 300.00386 * 11 10 9 30 30 H 1.08996 * 109.46626 * 60.00690 * 12 11 10 31 31 H 1.08994 * 109.47559 * 300.00413 * 12 11 10 32 32 H 1.09000 * 109.46719 * 60.00443 * 13 12 11 33 33 H 1.08994 * 109.47402 * 300.00513 * 13 12 11 34 34 H 1.09000 * 109.47441 * 60.00491 * 14 13 12 35 35 H 1.09002 * 109.47087 * 299.99937 * 14 13 12 36 36 H 1.09001 * 109.47671 * 60.00109 * 15 14 13 37 37 H 1.08998 * 109.47454 * 300.00107 * 15 14 13 38 38 H 0.97005 * 119.99811 * 0.02562 * 16 15 14 39 39 H 1.08005 * 127.98236 * 359.96018 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 6 1.8289 -6.1447 0.0005 13 6 0.8345 -7.3077 0.0018 14 6 1.5996 -8.6327 0.0018 15 6 0.6053 -9.7956 0.0025 16 7 1.3378 -11.0644 0.0019 17 6 0.6640 -12.2315 0.0080 18 8 -0.5521 -12.2315 0.0135 19 6 1.4012 -13.5084 0.0079 20 6 0.7997 -14.7502 0.0134 21 16 2.1204 -15.8538 0.0097 22 7 3.2461 -14.7679 0.0029 23 7 2.7260 -13.6047 -0.0024 24 1 -0.4850 0.8400 0.0004 25 1 0.3555 -2.3881 0.0005 26 1 2.6847 -3.7145 0.8905 27 1 2.6847 -3.7145 -0.8894 28 1 0.4369 -4.7622 -0.8886 29 1 0.4374 -4.7618 0.8913 30 1 2.4560 -6.2025 0.8901 31 1 2.4549 -6.2024 -0.8898 32 1 0.2070 -7.2501 -0.8875 33 1 0.2088 -7.2498 0.8924 34 1 2.2269 -8.6901 0.8914 35 1 2.2255 -8.6908 -0.8886 36 1 -0.0217 -9.7381 -0.8873 37 1 -0.0210 -9.7377 0.8926 38 1 2.3079 -11.0644 0.0015 39 1 -0.2562 -14.9773 0.0189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179157645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:16 Heat of formation + Delta-G solvation = -3.254432 kcal Electronic energy + Delta-G solvation = -19824.854780 eV Core-core repulsion = 16507.576783 eV Total energy + Delta-G solvation = -3317.277997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.16348 -40.39945 -37.92817 -36.80942 -35.36700 -33.64678 -33.15175 -31.51730 -28.75282 -27.88183 -26.04032 -24.67187 -23.33074 -22.25309 -22.01404 -21.73030 -20.21436 -19.11252 -17.88088 -17.31181 -17.11120 -16.88109 -16.67977 -16.35246 -16.12516 -15.38580 -15.29262 -15.25426 -15.00551 -14.08431 -13.92225 -13.69423 -13.44835 -13.09815 -13.00753 -12.93906 -12.64001 -12.40422 -12.21812 -12.02915 -11.81668 -11.79482 -11.66969 -11.37037 -11.33476 -11.24656 -11.20042 -10.92930 -10.92540 -10.22961 -9.01487 -7.96193 -5.25856 -0.96074 -0.06721 0.27912 0.51472 1.46594 1.50535 1.56821 1.96657 1.99189 2.55870 2.71789 3.36907 3.61398 3.70649 3.81310 4.01950 4.02926 4.24940 4.29650 4.31893 4.36303 4.60096 4.63733 4.77694 4.84394 4.97092 4.98149 5.06633 5.15190 5.25787 5.29099 5.38634 5.47570 5.54479 5.57482 6.17875 6.26321 6.50713 6.93239 7.31736 8.09011 8.32097 9.27342 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.060904 B = 0.001549 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.627968 B =18067.639611 C =18485.606382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.253 4.253 8 H 0.075 0.925 9 N -0.751 5.751 10 C 0.147 3.853 11 C -0.116 4.116 12 C -0.105 4.105 13 C -0.111 4.111 14 C -0.121 4.121 15 C 0.119 3.881 16 N -0.702 5.702 17 C 0.601 3.399 18 O -0.559 6.559 19 C -0.047 4.047 20 C -0.238 4.238 21 S 0.563 5.437 22 N -0.333 5.333 23 N -0.233 5.233 24 H 0.252 0.748 25 H 0.373 0.627 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.418 0.582 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 -38.170 0.032 38.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.093 0.907 9 N -0.393 5.393 10 C 0.021 3.979 11 C -0.154 4.154 12 C -0.143 4.143 13 C -0.150 4.150 14 C -0.158 4.158 15 C -0.004 4.004 16 N -0.352 5.352 17 C 0.383 3.617 18 O -0.437 6.437 19 C -0.194 4.194 20 C -0.395 4.395 21 S 0.699 5.301 22 N -0.313 5.313 23 N -0.102 5.102 24 H 0.061 0.939 25 H 0.205 0.795 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.255 0.745 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.676 -38.849 0.023 39.129 hybrid contribution -0.995 2.210 0.006 2.423 sum 3.681 -36.639 0.029 36.823 Atomic orbital electron populations 1.69817 1.06703 1.26264 1.59316 1.25643 0.96492 1.01334 1.03477 0.85145 0.77181 0.78759 0.78267 1.20270 1.21917 1.20259 1.19668 0.91589 0.85574 1.41687 0.90669 1.42653 1.05687 1.01513 1.89495 1.20881 0.94472 0.85138 0.97400 1.21634 0.98054 0.94253 1.01475 1.21426 0.97998 0.92218 1.02651 1.21437 0.98010 0.92782 1.02731 1.21714 0.97849 0.92303 1.03963 1.21519 0.95090 0.81281 1.02534 1.45876 1.11659 1.05111 1.72590 1.16875 0.85896 0.82418 0.76540 1.90838 1.13628 1.87330 1.51908 1.22559 0.89684 0.96768 1.10435 1.29302 1.11150 0.95808 1.03210 1.81263 0.87219 1.15287 1.46371 1.78330 1.28578 1.00385 1.24038 1.71562 1.09629 1.15263 1.13772 0.93916 0.79548 0.96376 0.96366 0.92626 0.92618 0.91385 0.91372 0.91592 0.91599 0.90194 0.90195 0.91368 0.91375 0.74472 0.75523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.25 -14.75 9.99 84.03 0.84 -13.91 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.75 -40.19 5.60 -343.46 -1.92 -42.11 16 10 C 0.15 6.10 6.26 86.38 0.54 6.64 16 11 C -0.12 -3.73 5.33 30.60 0.16 -3.57 16 12 C -0.10 -2.40 5.22 30.60 0.16 -2.24 16 13 C -0.11 -2.05 5.21 30.60 0.16 -1.89 16 14 C -0.12 -1.72 5.33 30.59 0.16 -1.56 16 15 C 0.12 1.93 5.67 86.38 0.49 2.42 16 16 N -0.70 -11.53 5.55 -466.34 -2.59 -14.12 16 17 C 0.60 11.87 7.81 86.67 0.68 12.55 16 18 O -0.56 -14.22 16.80 -4.06 -0.07 -14.29 16 19 C -0.05 -0.74 6.87 41.36 0.28 -0.46 16 20 C -0.24 -2.20 11.21 67.76 0.76 -1.44 16 21 S 0.56 3.22 23.38 -56.49 -1.32 1.90 16 22 N -0.33 -4.89 12.49 37.02 0.46 -4.42 16 23 N -0.23 -4.00 11.24 -50.34 -0.57 -4.57 16 24 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 25 H 0.37 21.08 7.67 -92.70 -0.71 20.37 16 26 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.42 5.68 8.06 -92.70 -0.75 4.93 16 39 H 0.23 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -74.98 351.02 0.62 -74.36 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: -0.39 Total: 22.43 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 4.70 Total: -7.56 kcal Atomic # 7 Polarization: -121.52 SS G_CDS: -4.33 Total: -125.85 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.07 Total: -14.29 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.32 Total: 1.90 kcal Total: -74.98 0.62 -74.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179157645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.106 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds