Wall clock time and date at job start Fri Apr 10 2020 17:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99647 * 2 1 4 4 C 1.46898 * 110.99888 * 123.95022 * 2 1 3 5 5 C 1.50701 * 109.47175 * 170.00045 * 4 2 1 6 6 C 1.38229 * 120.00177 * 269.72844 * 5 4 2 7 7 C 1.38239 * 120.00359 * 179.76196 * 6 5 4 8 8 C 1.38236 * 119.99321 * 0.48557 * 7 6 5 9 9 C 1.50702 * 119.99663 * 179.76637 * 8 7 6 10 10 N 1.46502 * 109.47128 * 270.02434 * 9 8 7 11 11 S 1.65603 * 119.99967 * 165.00396 * 10 9 8 12 12 O 1.42094 * 106.40195 * 178.54063 * 11 10 9 13 13 O 1.42106 * 106.39822 * 311.45472 * 11 10 9 14 14 C 1.76197 * 107.21984 * 64.99521 * 11 10 9 15 15 H 1.07994 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99699 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00478 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99982 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.46817 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47324 * 119.99499 * 18 16 14 21 21 H 1.48501 * 109.47277 * 239.99901 * 18 16 14 22 22 C 1.38238 * 120.00485 * 359.78863 * 8 7 6 23 23 C 1.38232 * 119.99627 * 359.95653 * 22 8 7 24 24 H 1.08992 * 109.47459 * 56.04762 * 1 2 3 25 25 H 1.09004 * 109.47040 * 176.04912 * 1 2 3 26 26 H 1.09000 * 109.47033 * 296.04865 * 1 2 3 27 27 H 1.09002 * 109.47611 * 59.99815 * 3 2 1 28 28 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47141 * 299.99621 * 3 2 1 30 30 H 1.09000 * 109.47384 * 290.00200 * 4 2 1 31 31 H 1.08997 * 109.47542 * 49.99973 * 4 2 1 32 32 H 1.08002 * 119.99683 * 359.97438 * 6 5 4 33 33 H 1.07991 * 120.00220 * 180.25032 * 7 6 5 34 34 H 1.09000 * 109.47256 * 30.02396 * 9 8 7 35 35 H 1.09004 * 109.46930 * 150.02162 * 9 8 7 36 36 H 0.96997 * 119.99855 * 344.99888 * 10 9 8 37 37 H 0.97001 * 120.00153 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99959 * 179.97438 * 22 8 7 39 39 H 1.07999 * 119.99652 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9729 6 6 3.9696 -2.0604 0.3057 7 6 5.3329 -2.2290 0.1503 8 6 6.2085 -1.2947 0.6710 9 6 7.6949 -1.4812 0.5063 10 7 8.2199 -2.2451 1.6408 11 16 9.7302 -2.9193 1.5571 12 8 9.9562 -3.5538 2.8082 13 8 9.7947 -3.6060 0.3146 14 6 10.8877 -1.5949 1.4543 15 1 10.5400 -0.5724 1.4558 16 6 12.2374 -1.8639 1.3720 17 7 12.6610 -3.1089 1.3707 18 14 13.4648 -0.4598 1.2638 19 1 12.7383 0.8353 1.2842 20 1 14.3944 -0.5246 2.4200 21 1 14.2372 -0.5737 0.0006 22 6 5.7209 -0.1896 1.3432 23 6 4.3576 -0.0183 1.4940 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 -0.3633 0.4513 0.9233 27 1 1.6459 1.8948 0.8900 28 1 3.0850 1.3424 -0.0005 29 1 1.6459 1.8948 -0.8900 30 1 1.7975 -0.2247 2.0628 31 1 1.5090 -1.7406 1.1758 32 1 3.2855 -2.7926 -0.0972 33 1 5.7138 -3.0926 -0.3745 34 1 7.8928 -2.0224 -0.4189 35 1 8.1813 -0.5065 0.4682 36 1 7.6830 -2.3559 2.4409 37 1 13.6106 -3.2981 1.3124 38 1 6.4052 0.5401 1.7504 39 1 3.9766 0.8448 2.0195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192988859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:49 Heat of formation + Delta-G solvation = -65.978895 kcal Electronic energy + Delta-G solvation = -21461.061765 eV Core-core repulsion = 18108.771080 eV Total energy + Delta-G solvation = -3352.290685 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.68995 -37.42526 -35.22271 -34.61912 -33.91360 -33.05863 -31.32574 -30.90197 -27.85662 -27.50656 -26.11113 -24.45903 -22.65404 -22.05779 -20.57044 -18.98607 -17.41219 -16.61799 -16.06998 -15.87482 -15.75577 -15.57232 -14.88543 -14.76706 -14.61316 -14.23784 -13.99376 -13.37827 -13.28923 -12.89268 -12.73718 -12.53683 -12.23523 -12.18552 -11.99625 -11.90679 -11.75276 -11.24396 -11.22231 -11.01637 -10.89234 -10.57415 -10.31530 -10.25570 -10.15685 -9.24077 -8.99738 -8.84623 -8.76064 -8.50180 -8.43705 -6.68239 -5.29741 1.28073 1.48677 2.41308 3.06732 3.15215 3.22101 3.57328 4.01661 4.10182 4.60030 4.66265 4.74803 4.88675 4.89191 4.99749 5.04718 5.09370 5.09759 5.21514 5.31398 5.41141 5.52863 5.56739 5.62664 5.70704 5.79220 5.92606 5.94348 6.16061 6.18104 6.42356 6.51133 6.56684 6.69717 6.74097 6.79434 6.86408 7.06896 7.34152 7.92766 8.00895 8.91237 10.25903 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.032195 B = 0.003074 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.504486 B = 9106.169964 C = 9602.599849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.018 3.982 4 C 0.095 3.905 5 C -0.085 4.085 6 C -0.101 4.101 7 C -0.103 4.103 8 C -0.085 4.085 9 C 0.164 3.836 10 N -1.133 6.133 11 S 2.716 3.284 12 O -1.007 7.007 13 O -1.007 7.007 14 C -1.019 5.019 15 H 0.102 0.898 16 C 0.132 3.868 17 N -0.845 5.845 18 Si 0.920 3.080 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.271 1.271 22 C -0.106 4.106 23 C -0.118 4.118 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.290 0.710 38 H 0.125 0.875 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.417 8.377 -1.664 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.266 5.266 3 C -0.130 4.130 4 C -0.032 4.032 5 C -0.086 4.086 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.086 4.086 9 C 0.038 3.962 10 N -0.887 5.887 11 S 2.815 3.185 12 O -0.997 6.997 13 O -0.997 6.997 14 C -1.153 5.153 15 H 0.121 0.879 16 C -0.085 4.085 17 N -0.475 5.475 18 Si 0.744 3.256 19 H -0.186 1.186 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.124 4.124 23 C -0.136 4.136 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.100 0.900 38 H 0.143 0.857 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.847 7.089 -2.283 21.198 hybrid contribution 0.314 1.752 1.027 2.055 sum -19.533 8.841 -1.256 21.478 Atomic orbital electron populations 1.22394 0.87232 1.02308 1.00469 1.61987 1.07549 1.14203 1.42842 1.22497 1.01818 0.88319 1.00327 1.21050 0.91903 0.98748 0.91534 1.19629 0.94298 0.95461 0.99191 1.20955 0.95151 0.97417 0.98407 1.21190 0.92895 0.98824 0.99238 1.20100 0.95745 0.94825 0.97962 1.20000 0.88988 0.96873 0.90360 1.56030 1.37027 1.71975 1.23672 1.00389 0.70724 0.74534 0.72818 1.93373 1.84228 1.76441 1.45663 1.93355 1.85918 1.74050 1.46350 1.30578 1.06054 1.12204 1.66442 0.87946 1.24747 0.98400 0.96819 0.88579 1.69906 1.18405 1.19014 1.40191 0.86139 0.79654 0.81259 0.78522 1.18645 1.19673 1.19640 1.21095 0.95146 0.97704 0.98492 1.20964 0.93216 0.98782 1.00669 0.91292 0.91295 0.95734 0.95776 0.90466 0.91487 0.94043 0.89972 0.86109 0.85518 0.89862 0.91365 0.76700 0.89970 0.85690 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.07 0.57 0.74 16 2 N -0.54 -4.95 5.01 -252.72 -1.27 -6.22 16 3 C 0.02 0.16 9.25 60.06 0.56 0.71 16 4 C 0.09 0.86 5.12 -4.98 -0.03 0.84 16 5 C -0.09 -0.94 4.89 -104.62 -0.51 -1.45 16 6 C -0.10 -1.19 9.70 -39.58 -0.38 -1.58 16 7 C -0.10 -1.39 9.70 -39.58 -0.38 -1.77 16 8 C -0.08 -1.22 5.28 -104.62 -0.55 -1.77 16 9 C 0.16 2.80 6.35 -5.19 -0.03 2.76 16 10 N -1.13 -22.35 5.99 -11.65 -0.07 -22.42 16 11 S 2.72 71.41 5.02 -107.50 -0.54 70.87 16 12 O -1.01 -29.50 18.02 -57.17 -1.03 -30.53 16 13 O -1.01 -29.13 17.49 -57.17 -1.00 -30.13 16 14 C -1.02 -27.77 9.72 30.60 0.30 -27.48 16 15 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 16 C 0.13 3.68 5.46 -17.82 -0.10 3.59 16 17 N -0.85 -24.88 13.19 55.43 0.73 -24.15 16 18 Si 0.92 20.52 29.54 -169.99 -5.02 15.50 16 19 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 C -0.11 -1.34 9.70 -39.58 -0.38 -1.72 16 23 C -0.12 -1.31 7.90 -39.58 -0.31 -1.62 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 26 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.08 0.72 5.89 -51.93 -0.31 0.42 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.35 8.06 -51.93 -0.42 -0.07 16 31 H 0.08 0.68 8.01 -51.93 -0.42 0.26 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 35 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.40 7.09 8.64 -34.47 -0.30 6.80 16 37 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.12 1.07 7.98 -52.49 -0.42 0.65 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -35.00 343.57 -9.88 -44.87 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.60 Total: 5.78 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: -1.26 Total: -28.74 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.60 Total: -52.79 kcal Atomic # 8 Polarization: -58.63 SS G_CDS: -2.03 Total: -60.66 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 71.41 SS G_CDS: -0.54 Total: 70.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.00 -9.88 -44.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.107 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds