Wall clock time and date at job start Fri Apr 10 2020 17:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99647 * 2 1 4 4 C 1.46898 * 110.99888 * 123.95022 * 2 1 3 5 5 C 1.50701 * 109.47175 * 170.00045 * 4 2 1 6 6 C 1.38229 * 120.00177 * 269.72844 * 5 4 2 7 7 C 1.38239 * 120.00359 * 179.76196 * 6 5 4 8 8 C 1.38236 * 119.99321 * 0.48557 * 7 6 5 9 9 C 1.50702 * 119.99663 * 179.76637 * 8 7 6 10 10 N 1.46502 * 109.47128 * 270.02434 * 9 8 7 11 11 S 1.65603 * 119.99967 * 165.00396 * 10 9 8 12 12 O 1.42094 * 106.40195 * 178.54063 * 11 10 9 13 13 O 1.42106 * 106.39822 * 311.45472 * 11 10 9 14 14 C 1.76197 * 107.21984 * 64.99521 * 11 10 9 15 15 H 1.07994 * 120.00193 * 0.02562 * 14 11 10 16 16 C 1.37875 * 119.99699 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00478 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99982 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.46817 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47324 * 119.99499 * 18 16 14 21 21 H 1.48501 * 109.47277 * 239.99901 * 18 16 14 22 22 C 1.38238 * 120.00485 * 359.78863 * 8 7 6 23 23 C 1.38232 * 119.99627 * 359.95653 * 22 8 7 24 24 H 1.08992 * 109.47459 * 56.04762 * 1 2 3 25 25 H 1.09004 * 109.47040 * 176.04912 * 1 2 3 26 26 H 1.09000 * 109.47033 * 296.04865 * 1 2 3 27 27 H 1.09002 * 109.47611 * 59.99815 * 3 2 1 28 28 H 1.09001 * 109.46987 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47141 * 299.99621 * 3 2 1 30 30 H 1.09000 * 109.47384 * 290.00200 * 4 2 1 31 31 H 1.08997 * 109.47542 * 49.99973 * 4 2 1 32 32 H 1.08002 * 119.99683 * 359.97438 * 6 5 4 33 33 H 1.07991 * 120.00220 * 180.25032 * 7 6 5 34 34 H 1.09000 * 109.47256 * 30.02396 * 9 8 7 35 35 H 1.09004 * 109.46930 * 150.02162 * 9 8 7 36 36 H 0.96997 * 119.99855 * 344.99888 * 10 9 8 37 37 H 0.97001 * 120.00153 * 179.97438 * 17 16 14 38 38 H 1.08001 * 119.99959 * 179.97438 * 22 8 7 39 39 H 1.07999 * 119.99652 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4818 -0.9524 0.9729 6 6 3.9696 -2.0604 0.3057 7 6 5.3329 -2.2290 0.1503 8 6 6.2085 -1.2947 0.6710 9 6 7.6949 -1.4812 0.5063 10 7 8.2199 -2.2451 1.6408 11 16 9.7302 -2.9193 1.5571 12 8 9.9562 -3.5538 2.8082 13 8 9.7947 -3.6060 0.3146 14 6 10.8877 -1.5949 1.4543 15 1 10.5400 -0.5724 1.4558 16 6 12.2374 -1.8639 1.3720 17 7 12.6610 -3.1089 1.3707 18 14 13.4648 -0.4598 1.2638 19 1 12.7383 0.8353 1.2842 20 1 14.3944 -0.5246 2.4200 21 1 14.2372 -0.5737 0.0006 22 6 5.7209 -0.1896 1.3432 23 6 4.3576 -0.0183 1.4940 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 -0.3633 0.4513 0.9233 27 1 1.6459 1.8948 0.8900 28 1 3.0850 1.3424 -0.0005 29 1 1.6459 1.8948 -0.8900 30 1 1.7975 -0.2247 2.0628 31 1 1.5090 -1.7406 1.1758 32 1 3.2855 -2.7926 -0.0972 33 1 5.7138 -3.0926 -0.3745 34 1 7.8928 -2.0224 -0.4189 35 1 8.1813 -0.5065 0.4682 36 1 7.6830 -2.3559 2.4409 37 1 13.6106 -3.2981 1.3124 38 1 6.4052 0.5401 1.7504 39 1 3.9766 0.8448 2.0195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192988859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:49 Heat of formation + Delta-G solvation = -93.239655 kcal Electronic energy + Delta-G solvation = -21462.243881 eV Core-core repulsion = 18108.771080 eV Total energy + Delta-G solvation = -3353.472800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61808 -38.20855 -37.38164 -36.13055 -35.99951 -35.14390 -32.41377 -31.84713 -28.56434 -28.36542 -28.24184 -25.54002 -23.59955 -22.86351 -21.51053 -21.00437 -19.34461 -18.32189 -17.60644 -16.88644 -16.77176 -16.61616 -16.36831 -15.96546 -15.82923 -15.60503 -15.26950 -14.99201 -14.34184 -14.09941 -13.93772 -13.76366 -13.27270 -13.24200 -13.09997 -13.01577 -13.01249 -12.63148 -12.50208 -12.45139 -12.41691 -12.38305 -12.26439 -11.81991 -11.71971 -11.25112 -10.98979 -10.20329 -9.78095 -9.64783 -9.23143 -8.73887 -7.46433 0.14882 0.53281 0.56482 1.34972 1.36226 1.53625 2.22504 2.59656 2.68659 3.11411 3.30587 3.68963 3.76431 3.90593 3.95625 4.16638 4.20654 4.33573 4.45837 4.51459 4.57116 4.60167 4.61896 4.66061 4.75906 4.80870 4.85727 5.05206 5.05629 5.07895 5.12985 5.21065 5.32021 5.49532 5.67933 5.74702 5.92327 6.03941 6.09822 6.14814 6.37290 6.80261 8.22808 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.032195 B = 0.003074 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.504486 B = 9106.169964 C = 9602.599849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.559 5.559 3 C 0.019 3.981 4 C 0.097 3.903 5 C -0.080 4.080 6 C -0.104 4.104 7 C -0.117 4.117 8 C -0.102 4.102 9 C 0.160 3.840 10 N -1.116 6.116 11 S 2.721 3.279 12 O -1.045 7.045 13 O -1.043 7.043 14 C -1.036 5.036 15 H 0.123 0.877 16 C 0.068 3.932 17 N -0.895 5.895 18 Si 0.992 3.008 19 H -0.245 1.245 20 H -0.261 1.261 21 H -0.260 1.260 22 C -0.108 4.108 23 C -0.114 4.114 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.413 0.587 37 H 0.298 0.702 38 H 0.135 0.865 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 10.784 -1.453 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.283 5.283 3 C -0.129 4.129 4 C -0.031 4.031 5 C -0.081 4.081 6 C -0.123 4.123 7 C -0.135 4.135 8 C -0.104 4.104 9 C 0.034 3.966 10 N -0.875 5.875 11 S 2.822 3.178 12 O -1.036 7.036 13 O -1.033 7.033 14 C -1.170 5.170 15 H 0.141 0.859 16 C -0.144 4.144 17 N -0.527 5.527 18 Si 0.810 3.190 19 H -0.168 1.168 20 H -0.186 1.186 21 H -0.185 1.185 22 C -0.127 4.127 23 C -0.132 4.132 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.154 0.846 33 H 0.139 0.861 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.247 0.753 37 H 0.108 0.892 38 H 0.153 0.847 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.324 9.483 -2.067 23.428 hybrid contribution 0.590 1.008 0.941 1.500 sum -20.734 10.491 -1.125 23.264 Atomic orbital electron populations 1.22430 0.85892 1.02919 1.01090 1.61976 1.08868 1.14553 1.42885 1.22490 1.01093 0.88268 1.01093 1.21057 0.90396 0.99538 0.92061 1.19935 0.95669 0.94692 0.97760 1.21143 0.94542 0.98190 0.98404 1.21257 0.93827 0.98729 0.99725 1.19875 0.93872 0.96389 1.00227 1.20158 0.91280 0.96557 0.88577 1.55420 1.35062 1.71902 1.25125 0.99852 0.71853 0.74629 0.71453 1.93309 1.85558 1.77772 1.46927 1.93302 1.87009 1.75365 1.47588 1.30906 1.06707 1.13187 1.66218 0.85940 1.26038 1.00915 0.99840 0.87656 1.70001 1.19520 1.21598 1.41546 0.85075 0.76911 0.77762 0.79224 1.16823 1.18565 1.18453 1.21240 0.96198 0.97220 0.98048 1.21211 0.92494 0.99366 1.00157 0.90727 0.90747 0.95031 0.94835 0.91589 0.90963 0.93061 0.89094 0.84587 0.86150 0.91186 0.90194 0.75324 0.89160 0.84691 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.57 127.69 1.22 1.50 16 2 N -0.56 -8.77 5.01 -953.47 -4.78 -13.54 16 3 C 0.02 0.27 9.25 127.69 1.18 1.45 16 4 C 0.10 1.49 5.12 85.56 0.44 1.93 16 5 C -0.08 -1.58 4.89 -19.87 -0.10 -1.68 16 6 C -0.10 -2.32 9.70 22.27 0.22 -2.11 16 7 C -0.12 -3.12 9.70 22.27 0.22 -2.90 16 8 C -0.10 -2.87 5.28 -19.86 -0.10 -2.97 16 9 C 0.16 5.46 6.35 85.63 0.54 6.00 16 10 N -1.12 -44.53 5.99 -190.78 -1.14 -45.68 16 11 S 2.72 146.70 5.02 -56.49 -0.28 146.41 16 12 O -1.05 -63.12 18.02 -128.00 -2.31 -65.43 16 13 O -1.04 -62.50 17.49 -128.00 -2.24 -64.74 16 14 C -1.04 -56.56 9.72 67.73 0.66 -55.90 16 15 H 0.12 5.95 7.81 -2.91 -0.02 5.93 16 16 C 0.07 3.78 5.46 84.65 0.46 4.25 16 17 N -0.90 -53.64 13.19 21.45 0.28 -53.36 16 18 Si 0.99 41.13 29.54 68.60 2.03 43.15 16 19 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 22 C -0.11 -2.56 9.70 22.27 0.22 -2.35 16 23 C -0.11 -2.26 7.90 22.27 0.18 -2.09 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.75 8.12 -2.38 -0.02 0.73 16 26 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.07 1.09 5.89 -2.39 -0.01 1.07 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.05 0.70 8.06 -2.39 -0.02 0.69 16 31 H 0.09 1.25 8.01 -2.39 -0.02 1.23 16 32 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.12 3.26 8.06 -2.92 -0.02 3.24 16 34 H 0.07 2.55 7.69 -2.39 -0.02 2.53 16 35 H 0.08 2.51 8.09 -2.38 -0.02 2.49 16 36 H 0.41 14.64 8.64 -96.75 -0.84 13.80 16 37 H 0.30 16.01 8.31 -92.71 -0.77 15.24 16 38 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 39 H 0.14 2.11 7.98 -2.91 -0.02 2.09 16 Total: -1.00 -76.02 343.57 -3.10 -79.12 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.21 Total: 28.94 kcal Atomic # 6 Polarization: -60.01 SS G_CDS: 5.13 Total: -54.88 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -5.64 Total: -112.58 kcal Atomic # 8 Polarization: -125.62 SS G_CDS: -4.54 Total: -130.16 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 146.70 SS G_CDS: -0.28 Total: 146.41 kcal Total: -76.02 -3.10 -79.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192988859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.123 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds