Wall clock time and date at job start Fri Apr 10 2020 17:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 109.47181 * 2 1 4 4 C 1.46899 * 109.46983 * 240.00297 * 2 1 3 5 5 C 1.46902 * 109.47060 * 120.00163 * 2 1 3 6 6 C 1.53005 * 109.46648 * 59.78750 * 5 2 1 7 7 H 1.09002 * 109.46443 * 172.96372 * 6 5 2 8 8 C 1.50700 * 109.46765 * 292.95249 * 6 5 2 9 9 H 1.08010 * 119.99447 * 115.62222 * 8 6 5 10 10 C 1.37875 * 120.00494 * 295.62273 * 8 6 5 11 11 N 1.31518 * 120.00145 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00009 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47316 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47491 * 120.00132 * 12 10 8 15 15 H 1.48505 * 109.47194 * 240.00250 * 12 10 8 16 16 O 1.42893 * 109.47646 * 52.95764 * 6 5 2 17 17 C 1.35158 * 116.99731 * 111.84298 * 16 6 5 18 18 C 1.38378 * 125.07294 * 275.44026 * 17 16 6 19 19 O 1.35149 * 125.07309 * 359.97438 * 18 17 16 20 20 C 1.47087 * 109.85511 * 180.27445 * 18 17 16 21 21 O 1.21458 * 126.38438 * 179.68592 * 20 18 17 22 22 C 1.49375 * 107.23481 * 359.71664 * 20 18 17 23 23 O 1.21222 * 127.09000 * 179.97438 * 22 20 18 24 24 C 1.47087 * 125.06894 * 95.22924 * 17 16 6 25 25 O 1.21450 * 126.38602 * 359.97438 * 24 17 16 26 26 H 1.08995 * 109.47104 * 282.29694 * 1 2 3 27 27 H 1.09002 * 109.47156 * 42.29345 * 1 2 3 28 28 H 1.08998 * 109.47582 * 162.29580 * 1 2 3 29 29 H 1.09003 * 109.47297 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47592 * 300.00383 * 3 2 1 31 31 H 1.09009 * 109.47266 * 60.00455 * 3 2 1 32 32 H 1.09008 * 109.47197 * 318.84852 * 4 2 1 33 33 H 1.09005 * 109.47451 * 78.84403 * 4 2 1 34 34 H 1.08998 * 109.47470 * 198.84558 * 4 2 1 35 35 H 1.08997 * 109.47123 * 299.78316 * 5 2 1 36 36 H 1.08996 * 109.46631 * 179.78011 * 5 2 1 37 37 H 0.96996 * 120.00199 * 179.97438 * 11 10 8 38 38 H 0.96701 * 114.00387 * 265.16371 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3849 0.0000 4 6 1.9587 -0.6924 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.4442 -2.1335 1.2020 7 1 1.9065 -2.6828 2.0222 8 6 -0.0523 -2.1322 1.3789 9 1 -0.6897 -2.5021 0.5892 10 6 -0.6079 -1.6589 2.5486 11 7 0.1681 -1.2080 3.5099 12 14 -2.4630 -1.6580 2.7680 13 1 -3.1059 -2.2117 1.5493 14 1 -2.8231 -2.4937 3.9415 15 1 -2.9348 -0.2671 2.9873 16 8 1.7768 -2.7603 -0.0384 17 6 2.6930 -3.7531 0.0021 18 6 4.0645 -3.5711 -0.0277 19 8 4.6876 -2.3742 -0.1022 20 6 4.7427 -4.8752 0.0265 21 8 5.9424 -5.0645 0.0123 22 6 3.6812 -5.9234 0.1016 23 8 3.8416 -7.1235 0.1602 24 6 2.3811 -5.1879 0.0890 25 8 1.2730 -5.6827 0.1367 26 1 -0.3633 0.2189 1.0040 27 1 -0.3633 0.7602 -0.6916 28 1 -0.3634 -0.9789 -0.3125 29 1 3.0487 1.3850 -0.0005 30 1 1.5953 1.8989 -0.8899 31 1 1.5954 1.8988 0.8901 32 1 1.3502 -1.5784 -1.3814 33 1 1.8923 -0.0237 -2.0577 34 1 2.9967 -0.9891 -1.0495 35 1 1.5985 -0.1765 2.0894 36 1 3.0486 -0.6959 1.1974 37 1 -0.2227 -0.8747 4.3326 38 1 4.9223 -2.1082 -1.0018 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225831069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:02 Heat of formation + Delta-G solvation = -14.669044 kcal Electronic energy + Delta-G solvation = -26010.384887 eV Core-core repulsion = 22133.503370 eV Total energy + Delta-G solvation = -3876.881517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.43080 -42.59922 -40.40289 -40.32275 -39.00774 -38.64300 -35.56438 -34.84025 -31.68717 -30.29127 -30.12271 -28.09172 -27.23898 -26.50915 -24.76955 -23.48010 -22.13337 -21.57260 -20.05267 -19.30577 -18.88573 -18.42373 -18.34953 -17.86561 -17.74312 -17.65000 -17.08236 -16.87791 -16.42175 -16.17878 -15.60095 -15.32398 -15.10532 -15.00630 -14.65196 -14.57778 -14.22346 -14.09110 -13.99611 -13.75734 -13.64566 -13.58270 -13.36760 -13.12846 -12.78357 -12.41726 -12.20421 -11.80102 -11.41213 -10.82728 -10.69436 -10.38903 -10.26991 -8.11064 -6.23161 -1.59590 -1.24267 0.46855 0.93728 1.37861 1.44756 1.57147 1.85498 2.03315 2.07698 2.36280 2.45321 2.51011 2.56532 2.75034 2.87547 2.91073 3.22471 3.22776 3.34373 3.50254 3.56850 3.70985 3.75890 3.77224 3.88259 3.96506 4.04242 4.27534 4.29387 4.60130 4.76547 4.82197 4.84072 5.41971 5.61813 5.78321 5.87920 5.94247 6.14072 6.87190 7.48802 8.93913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.252 5.252 3 C -0.042 4.042 4 C -0.038 4.038 5 C -0.013 4.013 6 C 0.204 3.796 7 H 0.074 0.926 8 C -0.562 4.562 9 H 0.089 0.911 10 C 0.072 3.928 11 N -0.875 5.875 12 Si 0.905 3.095 13 H -0.262 1.262 14 H -0.270 1.270 15 H -0.273 1.273 16 O -0.312 6.312 17 C 0.073 3.927 18 C 0.032 3.968 19 O -0.453 6.453 20 C 0.337 3.663 21 O -0.355 6.355 22 C 0.296 3.704 23 O -0.316 6.316 24 C 0.334 3.666 25 O -0.330 6.330 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.144 0.856 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.155 0.845 36 H 0.101 0.899 37 H 0.286 0.714 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 11.684 -10.291 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 N 0.090 4.910 3 C -0.184 4.184 4 C -0.179 4.179 5 C -0.134 4.134 6 C 0.151 3.849 7 H 0.091 0.909 8 C -0.598 4.598 9 H 0.107 0.893 10 C -0.135 4.135 11 N -0.509 5.509 12 Si 0.729 3.271 13 H -0.186 1.186 14 H -0.194 1.194 15 H -0.199 1.199 16 O -0.229 6.229 17 C 0.024 3.976 18 C -0.018 4.018 19 O -0.265 6.265 20 C 0.208 3.792 21 O -0.224 6.224 22 C 0.159 3.841 23 O -0.179 6.179 24 C 0.201 3.799 25 O -0.197 6.197 26 H 0.140 0.860 27 H 0.102 0.898 28 H 0.162 0.838 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.172 0.828 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.377 10.782 -9.566 15.064 hybrid contribution -0.598 0.177 0.146 0.641 sum 3.778 10.959 -9.420 14.937 Atomic orbital electron populations 1.24658 0.75449 1.08899 1.08158 1.45755 1.16347 1.13434 1.15445 1.24032 1.04588 0.81617 1.08135 1.24366 1.05326 1.01690 0.86512 1.24726 1.01254 0.99635 0.87813 1.20726 0.97932 0.85708 0.80504 0.90884 1.21218 0.88477 1.46235 1.03879 0.89271 1.24994 1.00533 0.93678 0.94325 1.69693 1.36695 1.37928 1.06587 0.86240 0.81519 0.79058 0.80252 1.18587 1.19444 1.19852 1.85929 1.57039 1.45642 1.34294 1.23185 0.88038 0.90151 0.96218 1.22551 0.89741 0.86810 1.02674 1.84601 1.77377 1.30680 1.33825 1.23577 0.89807 0.90185 0.75672 1.90734 1.15542 1.85960 1.30176 1.25673 0.92711 0.90181 0.75490 1.90664 1.86548 1.15393 1.25323 1.23496 0.90180 0.89635 0.76544 1.90759 1.25905 1.75296 1.27731 0.86049 0.89788 0.83775 0.87171 0.87133 0.86743 0.84241 0.88283 0.87834 0.82769 0.88105 0.90368 0.73752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.23 6.87 60.07 0.41 0.64 16 2 N -0.25 2.37 0.05 -395.61 -0.02 2.35 16 3 C -0.04 0.51 7.88 60.06 0.47 0.98 16 4 C -0.04 0.41 7.01 60.06 0.42 0.83 16 5 C -0.01 0.07 4.07 -3.82 -0.02 0.05 16 6 C 0.20 -0.13 2.45 -27.88 -0.07 -0.20 16 7 H 0.07 0.20 7.73 -51.93 -0.40 -0.21 16 8 C -0.56 -1.49 5.33 -34.44 -0.18 -1.67 16 9 H 0.09 0.30 6.97 -52.48 -0.37 -0.07 16 10 C 0.07 0.36 4.02 -17.82 -0.07 0.29 16 11 N -0.87 -5.42 11.64 55.43 0.64 -4.78 16 12 Si 0.90 5.06 29.54 -169.99 -5.02 0.04 16 13 H -0.26 -1.54 7.11 56.52 0.40 -1.13 16 14 H -0.27 -2.21 7.11 56.52 0.40 -1.81 16 15 H -0.27 -1.53 7.11 56.52 0.40 -1.13 16 16 O -0.31 0.95 5.41 -17.77 -0.10 0.85 16 17 C 0.07 -0.19 6.21 -35.94 -0.22 -0.42 16 18 C 0.03 -0.13 7.44 -35.94 -0.27 -0.40 16 19 O -0.45 2.98 12.20 -17.74 -0.22 2.76 16 20 C 0.34 -0.42 7.77 -31.36 -0.24 -0.66 16 21 O -0.36 -0.64 18.04 5.11 0.09 -0.55 16 22 C 0.30 0.07 7.94 -30.31 -0.24 -0.17 16 23 O -0.32 -1.11 18.02 4.29 0.08 -1.03 16 24 C 0.33 0.07 7.77 -31.36 -0.24 -0.17 16 25 O -0.33 -1.32 18.04 5.12 0.09 -1.23 16 26 H 0.12 -0.55 6.14 -51.93 -0.32 -0.87 16 27 H 0.08 -0.86 7.84 -51.93 -0.41 -1.27 16 28 H 0.14 -0.78 4.88 -51.93 -0.25 -1.03 16 29 H 0.11 -1.46 8.14 -51.93 -0.42 -1.88 16 30 H 0.11 -1.54 7.88 -51.93 -0.41 -1.95 16 31 H 0.11 -1.31 8.14 -51.92 -0.42 -1.73 16 32 H 0.14 -1.22 5.22 -51.92 -0.27 -1.49 16 33 H 0.10 -1.32 7.82 -51.93 -0.41 -1.72 16 34 H 0.10 -1.21 5.93 -51.93 -0.31 -1.51 16 35 H 0.15 -0.39 6.17 -51.93 -0.32 -0.71 16 36 H 0.10 -0.67 7.84 -51.93 -0.41 -1.08 16 37 H 0.29 1.98 8.31 -40.82 -0.34 1.65 16 38 H 0.40 -4.66 8.76 45.56 0.40 -4.26 16 LS Contribution 316.76 15.07 4.77 4.77 Total: 0.00 -16.54 316.76 -3.37 -19.91 By element: Atomic # 1 Polarization: -18.76 SS G_CDS: -3.45 Total: -22.21 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.25 Total: -0.90 kcal Atomic # 7 Polarization: -3.05 SS G_CDS: 0.63 Total: -2.43 kcal Atomic # 8 Polarization: 0.86 SS G_CDS: -0.05 Total: 0.80 kcal Atomic # 14 Polarization: 5.06 SS G_CDS: -5.02 Total: 0.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -16.54 -3.37 -19.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225831069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.240 kcal (2) G-P(sol) polarization free energy of solvation -16.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds