Wall clock time and date at job start Fri Apr 10 2020 17:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48504 * 109.47016 * 269.99450 * 3 2 1 5 5 H 1.48498 * 109.47518 * 29.99754 * 3 2 1 6 6 H 1.48506 * 109.47171 * 149.99756 * 3 2 1 7 7 C 1.37878 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99547 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00057 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47354 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99490 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00394 * 179.97438 * 11 10 9 14 14 C 1.47815 * 134.36922 * 180.02562 * 13 11 10 15 15 C 1.52736 * 85.84371 * 156.29877 * 14 13 11 16 16 C 1.48085 * 134.46669 * 359.88795 * 13 11 10 17 17 S 1.82612 * 115.06697 * 266.25760 * 15 14 13 18 18 C 1.84164 * 95.58408 * 210.34829 * 17 15 14 19 19 C 1.55254 * 100.99686 * 34.79426 * 18 17 15 20 20 C 1.52590 * 116.52353 * 141.42345 * 15 14 13 21 21 H 1.08999 * 108.96383 * 5.91454 * 20 15 14 22 22 C 1.50700 * 108.96054 * 247.17209 * 20 15 14 23 23 N 1.34768 * 120.00023 * 95.64699 * 22 20 15 24 24 O 1.21285 * 119.99928 * 275.64138 * 22 20 15 25 25 H 0.97003 * 119.99722 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47151 * 60.00179 * 9 7 2 27 27 H 1.08999 * 109.46927 * 299.99798 * 9 7 2 28 28 H 1.09004 * 109.46818 * 59.99415 * 10 9 7 29 29 H 1.09007 * 109.47059 * 300.00439 * 10 9 7 30 30 H 1.09005 * 113.83545 * 42.04279 * 14 13 11 31 31 H 1.09001 * 113.83855 * 270.55504 * 14 13 11 32 32 H 1.09004 * 113.72368 * 89.49652 * 16 13 11 33 33 H 1.08999 * 114.02330 * 317.94526 * 16 13 11 34 34 H 1.08997 * 111.11354 * 276.85472 * 18 17 15 35 35 H 1.09007 * 111.14559 * 152.73992 * 18 17 15 36 36 H 1.09002 * 109.59354 * 199.07457 * 19 18 17 37 37 H 1.09005 * 109.43717 * 78.88293 * 19 18 17 38 38 H 0.96996 * 120.00114 * 359.97438 * 23 22 20 39 39 H 0.97005 * 120.00009 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6366 0.0023 11 6 5.5285 -2.6367 0.0022 12 8 6.1349 -1.5863 0.0018 13 7 6.2024 -3.8038 0.0037 14 6 7.6343 -4.1706 0.0046 15 6 7.1807 -5.4937 0.6181 16 6 5.8059 -5.2306 0.0076 17 16 7.2176 -5.5533 2.4429 18 6 7.5593 -7.3594 2.5564 19 6 8.4661 -7.5679 1.3136 20 6 7.9074 -6.7491 0.1444 21 1 8.7312 -6.4571 -0.5067 22 6 6.9456 -7.6058 -0.6380 23 7 6.9064 -7.5193 -1.9823 24 8 6.2069 -8.3731 -0.0579 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6801 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.6585 -3.1510 -0.8875 29 1 3.6578 -3.1499 0.8925 30 1 8.2446 -3.5619 0.6719 31 1 8.0638 -4.2716 -0.9921 32 1 5.6782 -5.6530 -0.9891 33 1 4.9760 -5.4587 0.6764 34 1 6.6399 -7.9389 2.4734 35 1 8.0918 -7.6019 3.4761 36 1 8.4817 -8.6244 1.0455 37 1 9.4782 -7.2342 1.5429 38 1 7.4970 -6.9055 -2.4463 39 1 6.2876 -8.0710 -2.4860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271768472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:18 Heat of formation + Delta-G solvation = -39.750029 kcal Electronic energy + Delta-G solvation = -22135.775946 eV Core-core repulsion = 18784.622630 eV Total energy + Delta-G solvation = -3351.153316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19177 -39.49646 -37.68437 -35.08933 -34.12253 -33.46816 -31.39126 -30.11096 -27.69125 -26.84252 -25.54837 -23.23160 -22.56084 -20.76598 -20.01101 -18.81468 -17.79508 -17.51955 -17.25453 -16.71348 -16.20053 -15.88167 -15.38983 -15.11004 -14.72667 -14.23087 -14.12531 -14.01197 -13.72093 -13.26866 -12.90841 -12.65447 -12.52049 -12.26493 -12.10219 -11.92744 -11.68336 -11.47874 -11.32931 -10.95043 -10.33229 -10.16829 -10.14361 -10.11984 -10.03575 -9.76921 -9.25899 -9.15720 -8.68413 -8.48737 -7.94652 -6.01084 -3.99808 1.41616 1.90917 2.19281 2.74822 2.94897 3.06436 3.39141 3.45692 3.57267 3.74247 3.91079 4.17481 4.38937 4.47777 4.52704 4.61462 4.74803 4.91367 5.00691 5.06880 5.26992 5.30289 5.33149 5.34279 5.43691 5.46718 5.58455 5.88875 6.10952 6.15051 6.30224 6.69182 6.81179 7.36426 7.44634 7.73579 7.76950 7.82974 8.48300 8.58975 9.01824 9.61788 11.11751 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.024286 B = 0.003555 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.652521 B = 7874.167364 C = 8124.219581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.115 4.115 11 C 0.539 3.461 12 O -0.534 6.534 13 N -0.648 5.648 14 C 0.131 3.869 15 C -0.051 4.051 16 C 0.120 3.880 17 S -0.216 6.216 18 C -0.079 4.079 19 C -0.106 4.106 20 C -0.104 4.104 21 H 0.109 0.891 22 C 0.523 3.477 23 N -0.854 5.854 24 O -0.529 6.529 25 H 0.263 0.737 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.403 0.597 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.190 -19.794 -2.003 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.155 4.155 11 C 0.331 3.669 12 O -0.410 6.410 13 N -0.387 5.387 14 C 0.006 3.994 15 C -0.163 4.163 16 C -0.006 4.006 17 S 0.014 5.986 18 C -0.227 4.227 19 C -0.145 4.145 20 C -0.128 4.128 21 H 0.127 0.873 22 C 0.307 3.693 23 N -0.418 5.418 24 O -0.404 6.404 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.231 0.769 39 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 20.677 -18.446 -0.554 27.715 hybrid contribution 0.507 0.016 -1.507 1.590 sum 21.184 -18.431 -2.062 28.155 Atomic orbital electron populations 1.69917 1.06277 1.26947 1.51076 1.24962 0.94705 0.99189 0.94318 0.86803 0.80675 0.83416 0.78717 1.20250 1.21382 1.18521 1.21097 0.89180 0.94603 1.51334 0.90921 1.19385 0.96510 0.90023 0.97663 1.21639 0.87252 1.03263 1.03334 1.21320 0.91147 0.80786 0.73650 1.90668 1.70742 1.30170 1.49386 1.50217 1.07020 1.05318 1.76128 1.22982 0.86059 0.90063 1.00250 1.24325 0.99789 0.96199 0.95983 1.23403 0.95905 0.80477 1.00805 1.88072 1.94748 1.11956 1.03854 1.24500 1.03358 0.93983 1.00829 1.22280 0.99603 1.00871 0.91743 1.21722 0.98090 0.93726 0.99256 0.87253 1.20389 0.83675 0.82498 0.82775 1.44000 1.44201 1.46222 1.07413 1.90783 1.41806 1.38356 1.69437 0.92720 0.95755 0.96303 0.89790 0.89499 0.88758 0.89028 0.89173 0.88209 0.87916 0.87318 0.89379 0.89346 0.76873 0.76383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 22.95 27.47 -169.99 -4.67 18.28 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.83 6.54 56.52 0.37 -6.46 16 7 C -0.52 -15.36 9.66 -34.44 -0.33 -15.69 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.12 -2.39 5.39 -27.88 -0.15 -2.54 16 11 C 0.54 10.51 8.06 -10.99 -0.09 10.42 16 12 O -0.53 -12.41 16.71 5.55 0.09 -12.31 16 13 N -0.65 -9.41 3.63 -183.74 -0.67 -10.08 16 14 C 0.13 1.38 8.05 -3.46 -0.03 1.35 16 15 C -0.05 -0.49 1.31 -91.27 -0.12 -0.61 16 16 C 0.12 1.37 7.06 -3.32 -0.02 1.35 16 17 S -0.22 -2.45 22.56 -107.50 -2.43 -4.88 16 18 C -0.08 -0.63 7.34 38.35 0.28 -0.35 16 19 C -0.11 -0.65 5.53 -25.39 -0.14 -0.79 16 20 C -0.10 -0.67 2.84 -91.84 -0.26 -0.93 16 21 H 0.11 0.38 7.77 -51.93 -0.40 -0.03 16 22 C 0.52 4.00 4.94 -10.99 -0.05 3.94 16 23 N -0.85 -3.75 8.27 31.22 0.26 -3.49 16 24 O -0.53 -6.14 16.63 5.55 0.09 -6.05 16 25 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 26 H 0.02 0.66 7.16 -51.93 -0.37 0.28 16 27 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 28 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.09 1.10 8.11 -51.93 -0.42 0.67 16 31 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 32 H 0.09 0.86 6.42 -51.93 -0.33 0.53 16 33 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 34 H 0.10 0.96 7.72 -51.93 -0.40 0.56 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.52 7.67 -51.93 -0.40 0.12 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.40 0.73 8.77 -40.82 -0.36 0.37 16 39 H 0.40 1.59 8.93 -40.82 -0.36 1.23 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -38.04 334.09 -8.18 -46.21 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.56 Total: -3.21 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.11 Total: -1.89 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.37 Total: -41.19 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.19 Total: -18.36 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.28 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.43 Total: -4.88 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.04 -8.18 -46.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271768472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.462 kcal (2) G-P(sol) polarization free energy of solvation -38.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds