Wall clock time and date at job start Fri Apr 10 2020 17:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 110.21385 * 2 1 4 4 C 1.52999 * 109.46811 * 63.07436 * 3 2 1 5 5 C 1.50696 * 109.47144 * 179.97438 * 4 3 2 6 6 O 1.20826 * 120.00054 * 0.02562 * 5 4 3 7 7 O 1.34226 * 120.00258 * 179.97438 * 5 4 3 8 8 C 1.45204 * 117.00212 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47351 * 180.02562 * 8 7 5 10 10 O 1.21298 * 120.00021 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00451 * 180.02562 * 9 8 7 12 12 C 1.37093 * 120.00194 * 180.02562 * 11 9 8 13 13 H 1.07995 * 119.99990 * 359.97438 * 12 11 9 14 14 C 1.38954 * 119.99803 * 179.97438 * 12 11 9 15 15 N 1.31415 * 120.00078 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99914 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47069 * 89.99840 * 16 14 12 18 18 H 1.48502 * 109.47122 * 209.99956 * 16 14 12 19 19 H 1.48504 * 109.47166 * 329.99701 * 16 14 12 20 20 C 1.54478 * 110.24594 * 238.07641 * 2 1 3 21 21 C 1.54624 * 101.76564 * 215.49323 * 20 2 1 22 22 C 1.51277 * 104.19514 * 24.79725 * 21 20 2 23 23 O 1.21282 * 124.94034 * 163.78675 * 22 21 20 24 24 N 1.34419 * 110.11922 * 343.74447 * 22 21 20 25 25 H 1.08994 * 109.47570 * 60.70161 * 1 2 3 26 26 H 1.09003 * 109.46662 * 180.70346 * 1 2 3 27 27 H 1.09004 * 109.46971 * 300.69508 * 1 2 3 28 28 H 1.08992 * 109.47046 * 183.07279 * 3 2 1 29 29 H 1.08997 * 109.47395 * 303.07819 * 3 2 1 30 30 H 1.09009 * 109.47170 * 300.00068 * 4 3 2 31 31 H 1.09001 * 109.47273 * 59.99848 * 4 3 2 32 32 H 1.08992 * 109.47181 * 300.00300 * 8 7 5 33 33 H 1.08997 * 109.46682 * 60.00453 * 8 7 5 34 34 H 0.96999 * 119.99373 * 359.97438 * 11 9 8 35 35 H 0.97001 * 119.99740 * 180.02562 * 15 14 12 36 36 H 1.09008 * 110.96878 * 333.61247 * 20 2 1 37 37 H 1.09004 * 110.97028 * 97.37180 * 20 2 1 38 38 H 1.09003 * 110.48789 * 143.47321 * 21 20 2 39 39 H 1.09005 * 110.48540 * 265.98614 * 21 20 2 40 40 H 0.96990 * 124.35323 * 179.61614 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 6 1.6219 2.1400 1.2861 5 6 2.1431 3.5540 1.2865 6 8 2.7964 3.9573 0.3536 7 8 1.8806 4.3658 2.3227 8 6 2.4149 5.7143 2.2556 9 6 2.0222 6.4727 3.4972 10 8 1.3577 5.9300 4.3546 11 7 2.4092 7.7540 3.6550 12 6 2.0523 8.4437 4.7847 13 1 1.4606 7.9605 5.5481 14 6 2.4518 9.7646 4.9476 15 7 3.1721 10.3525 4.0189 16 14 1.9649 10.7047 6.4866 17 1 3.0066 10.5214 7.5289 18 1 1.8355 12.1485 6.1645 19 1 0.6654 10.1914 6.9899 20 6 2.0646 -0.7664 -1.2301 21 6 3.3300 -1.4432 -0.6545 22 6 3.0549 -1.5427 0.8297 23 8 3.6624 -2.2529 1.6027 24 7 2.0397 -0.7289 1.1674 25 1 -0.3634 0.5029 -0.8961 26 1 -0.3633 -1.0276 0.0126 27 1 -0.3633 0.5246 0.8837 28 1 3.1471 1.4222 -0.0551 29 1 1.6579 1.9706 -0.8611 30 1 0.5333 2.1536 1.3413 31 1 2.0226 1.6053 2.1473 32 1 3.5017 5.6714 2.1851 33 1 2.0136 6.2208 1.3779 34 1 2.9409 8.1879 2.9695 35 1 3.4513 11.2744 4.1328 36 1 1.3441 -1.5107 -1.5694 37 1 2.3221 -0.0793 -2.0362 38 1 3.4613 -2.4358 -1.0854 39 1 4.2102 -0.8278 -0.8410 40 1 1.6894 -0.6352 2.0669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320056902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:24 Heat of formation + Delta-G solvation = -170.832111 kcal Electronic energy + Delta-G solvation = -23509.162218 eV Core-core repulsion = 19709.571885 eV Total energy + Delta-G solvation = -3799.590332 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12916 -40.25920 -38.21850 -37.58020 -36.17152 -34.02406 -33.36750 -31.74326 -31.40732 -30.35831 -28.43685 -26.04562 -24.74751 -23.99686 -21.18952 -21.04571 -20.07886 -19.60346 -18.10256 -17.79687 -17.12895 -16.68478 -16.33283 -16.27758 -15.55738 -15.43216 -14.69655 -14.61466 -14.34736 -14.03809 -14.02223 -13.76698 -13.54252 -12.98634 -12.95163 -12.71214 -12.59716 -12.26663 -12.07551 -11.90535 -11.64123 -11.62863 -11.31370 -11.15037 -11.02610 -10.46528 -10.46010 -10.44179 -10.30577 -10.15497 -9.62689 -9.49877 -8.54837 -8.10581 -6.52108 -3.94205 2.26014 2.31628 2.66258 2.98582 3.11795 3.22141 3.28186 3.71312 3.84404 4.01881 4.07838 4.22533 4.45362 4.51169 4.64291 4.78176 4.85147 4.93751 5.09342 5.10625 5.12873 5.22933 5.27935 5.34897 5.45784 5.51086 5.54568 5.59367 5.66456 5.69539 5.82199 6.03285 6.49054 6.61005 6.71426 7.45796 7.80248 7.93729 7.95616 8.46232 9.04960 9.37020 9.86890 10.65118 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.034811 B = 0.002347 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.145231 B =11926.361861 C =12067.930186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.156 3.844 3 C -0.113 4.113 4 C -0.115 4.115 5 C 0.458 3.542 6 O -0.516 6.516 7 O -0.327 6.327 8 C 0.061 3.939 9 C 0.437 3.563 10 O -0.577 6.577 11 N -0.552 5.552 12 C -0.303 4.303 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.897 5.897 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.122 4.122 21 C -0.158 4.158 22 C 0.520 3.480 23 O -0.536 6.536 24 N -0.723 5.723 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -19.025 -13.705 23.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 C -0.152 4.152 4 C -0.153 4.153 5 C 0.301 3.699 6 O -0.405 6.405 7 O -0.241 6.241 8 C -0.017 4.017 9 C 0.222 3.778 10 O -0.461 6.461 11 N -0.190 5.190 12 C -0.432 4.432 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.761 3.239 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.160 4.160 21 C -0.199 4.199 22 C 0.306 3.694 23 O -0.413 6.413 24 N -0.379 5.379 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -3.319 -19.425 -13.101 23.664 hybrid contribution 0.105 1.139 0.605 1.294 sum -3.214 -18.286 -12.496 22.380 Atomic orbital electron populations 1.22185 0.92877 1.03089 1.03635 1.21077 0.94871 0.91367 0.85752 1.21866 1.02699 0.93247 0.97349 1.21396 1.03700 0.89137 1.01069 1.23682 0.77473 0.88748 0.80033 1.90653 1.37421 1.76570 1.35844 1.86550 1.69975 1.24052 1.43525 1.22742 0.99495 0.79718 0.99728 1.19331 0.86684 0.83525 0.88241 1.90562 1.42731 1.68499 1.44283 1.41709 1.47396 1.09207 1.20658 1.19726 1.31865 0.93992 0.97595 0.87614 1.25321 0.96480 0.96860 0.99105 1.69616 1.36252 1.13958 1.33946 0.85793 0.79252 0.78219 0.80660 1.20236 1.20790 1.19267 1.22698 0.96758 0.99832 0.96704 1.22378 1.00080 1.04010 0.93382 1.20882 0.79007 0.78426 0.91038 1.90774 1.51877 1.41031 1.57620 1.46451 1.36309 1.43741 1.11402 0.90470 0.91589 0.91337 0.90215 0.89215 0.87240 0.87778 0.89595 0.89548 0.77158 0.91604 0.89539 0.88714 0.88040 0.87617 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 8.54 37.16 0.32 -0.37 16 2 C 0.16 0.86 0.87 -130.90 -0.11 0.75 16 3 C -0.11 -0.83 3.67 -26.73 -0.10 -0.93 16 4 C -0.12 -1.07 5.38 -27.89 -0.15 -1.22 16 5 C 0.46 6.58 7.96 36.00 0.29 6.87 16 6 O -0.52 -8.31 15.73 -18.75 -0.29 -8.60 16 7 O -0.33 -5.88 9.76 -45.89 -0.45 -6.32 16 8 C 0.06 1.14 5.94 36.00 0.21 1.36 16 9 C 0.44 10.50 7.86 -10.99 -0.09 10.41 16 10 O -0.58 -15.98 16.08 -14.12 -0.23 -16.20 16 11 N -0.55 -13.93 5.29 -10.96 -0.06 -13.98 16 12 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 13 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 14 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 15 N -0.90 -23.99 13.05 55.50 0.72 -23.27 16 16 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 C -0.12 -0.52 6.20 -25.10 -0.16 -0.67 16 21 C -0.16 -0.97 6.86 -26.75 -0.18 -1.15 16 22 C 0.52 5.10 8.43 -10.86 -0.09 5.01 16 23 O -0.54 -7.81 18.03 5.56 0.10 -7.71 16 24 N -0.72 -5.33 4.87 -46.61 -0.23 -5.56 16 25 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.30 6.55 -51.93 -0.34 -0.04 16 28 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.11 0.81 6.55 -51.92 -0.34 0.47 16 31 H 0.10 0.91 7.39 -51.93 -0.38 0.53 16 32 H 0.09 1.49 8.13 -51.93 -0.42 1.06 16 33 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 34 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.09 0.28 7.91 -51.92 -0.41 -0.13 16 37 H 0.09 0.30 7.89 -51.93 -0.41 -0.11 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.41 2.83 8.65 -40.82 -0.35 2.47 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -35.46 343.91 -6.02 -41.48 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.45 Total: 7.23 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -0.30 Total: 12.14 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.44 Total: -42.81 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.87 Total: -38.83 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.46 -6.02 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320056902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.348 kcal (2) G-P(sol) polarization free energy of solvation -35.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds