Wall clock time and date at job start Fri Apr 10 2020 17:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.21605 * 2 1 4 4 C 1.53009 * 109.47160 * 300.70032 * 3 2 1 5 5 C 1.50696 * 109.47179 * 179.97438 * 4 3 2 6 6 O 1.20831 * 119.99892 * 0.02562 * 5 4 3 7 7 O 1.34221 * 120.00221 * 180.02562 * 5 4 3 8 8 C 1.45201 * 117.00608 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47499 * 180.02562 * 8 7 5 10 10 O 1.21296 * 119.99843 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00252 * 180.02562 * 9 8 7 12 12 C 1.37091 * 120.00545 * 179.97438 * 11 9 8 13 13 H 1.08006 * 119.99872 * 359.97438 * 12 11 9 14 14 C 1.38948 * 120.00509 * 179.97438 * 12 11 9 15 15 N 1.31412 * 120.00333 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00106 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47548 * 89.99659 * 16 14 12 18 18 H 1.48504 * 109.47391 * 210.00229 * 16 14 12 19 19 H 1.48507 * 109.46866 * 329.99965 * 16 14 12 20 20 C 1.54482 * 110.24937 * 121.92867 * 2 1 3 21 21 C 1.54633 * 101.76156 * 93.58366 * 20 2 1 22 22 C 1.51280 * 104.19839 * 24.80215 * 21 20 2 23 23 O 1.21280 * 124.94580 * 163.77874 * 22 21 20 24 24 N 1.34423 * 110.11287 * 343.74712 * 22 21 20 25 25 H 1.09002 * 109.47153 * 298.06917 * 1 2 3 26 26 H 1.09001 * 109.46832 * 178.07108 * 1 2 3 27 27 H 1.09004 * 109.47261 * 58.07089 * 1 2 3 28 28 H 1.08995 * 109.47432 * 60.70083 * 3 2 1 29 29 H 1.09000 * 109.46999 * 180.70583 * 3 2 1 30 30 H 1.08995 * 109.46990 * 300.00321 * 4 3 2 31 31 H 1.09001 * 109.46625 * 59.99597 * 4 3 2 32 32 H 1.09006 * 109.46486 * 300.00063 * 8 7 5 33 33 H 1.09002 * 109.46775 * 59.99491 * 8 7 5 34 34 H 0.97003 * 119.99944 * 359.97438 * 11 9 8 35 35 H 0.97001 * 120.00590 * 179.97438 * 15 14 12 36 36 H 1.08999 * 110.97153 * 211.70356 * 20 2 1 37 37 H 1.08993 * 110.96474 * 335.43263 * 20 2 1 38 38 H 1.09004 * 110.48006 * 143.48107 * 21 20 2 39 39 H 1.08995 * 110.48488 * 265.98865 * 21 20 2 40 40 H 0.97000 * 124.35011 * 179.59421 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4358 0.0000 4 6 1.5438 2.1689 -1.2404 5 6 2.0640 3.5832 -1.2401 6 8 2.7742 3.9655 -0.3403 7 8 1.7386 4.4183 -2.2392 8 6 2.2760 5.7656 -2.1740 9 6 1.8067 6.5522 -3.3706 10 8 1.0902 6.0286 -4.1975 11 7 2.1840 7.8370 -3.5227 12 6 1.7576 8.5525 -4.6115 13 1 1.1196 8.0863 -5.3479 14 6 2.1462 9.8773 -4.7680 15 7 1.7378 10.5630 -5.8121 16 14 3.2502 10.6835 -3.4950 17 1 4.6718 10.4814 -3.8735 18 1 2.9560 12.1378 -3.4343 19 1 3.0004 10.0720 -2.1649 20 6 2.0646 -0.7665 1.2301 21 6 2.2625 -2.1879 0.6542 22 6 2.4509 -1.9640 -0.8300 23 8 2.9074 -2.7793 -1.6032 24 7 2.0379 -0.7301 -1.1675 25 1 -0.3633 0.4836 0.9068 26 1 -0.3633 -1.0271 -0.0346 27 1 -0.3634 0.5435 -0.8722 28 1 1.7124 1.9505 0.8961 29 1 3.1485 1.4216 -0.0127 30 1 1.8901 1.6541 -2.1365 31 1 0.4540 2.1829 -1.2278 32 1 1.9293 6.2512 -1.2617 33 1 3.3651 5.7225 -2.1712 34 1 2.7574 8.2556 -2.8616 35 1 2.0087 11.4880 -5.9211 36 1 3.0121 -0.3476 1.5692 37 1 1.3312 -0.7703 2.0363 38 1 3.1486 -2.6541 1.0852 39 1 1.3810 -2.8011 0.8407 40 1 2.0713 -0.3687 -2.0670 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320056903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:27 Heat of formation + Delta-G solvation = -162.900809 kcal Electronic energy + Delta-G solvation = -23466.482926 eV Core-core repulsion = 19667.236520 eV Total energy + Delta-G solvation = -3799.246405 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16634 -40.38426 -38.42279 -37.64713 -36.30321 -34.09553 -33.58686 -31.83251 -31.79387 -30.08127 -28.61221 -26.56952 -24.68995 -23.76880 -21.26082 -21.09610 -20.10068 -19.67632 -18.62183 -17.97597 -17.06923 -16.83673 -16.47498 -16.32795 -15.66844 -15.34516 -14.91027 -14.88531 -14.47722 -14.09326 -13.92701 -13.69917 -13.29996 -13.19092 -13.00154 -12.80589 -12.67882 -12.42471 -12.28978 -12.23822 -11.97764 -11.53201 -11.36555 -11.29223 -11.13221 -10.67838 -10.58136 -10.56059 -10.19972 -10.07751 -9.70731 -9.53901 -8.70421 -8.32354 -6.41905 -3.95021 2.14863 2.26887 2.53797 2.94763 2.96061 3.00981 3.09839 3.51904 3.79638 3.95017 4.01151 4.15189 4.31202 4.45233 4.53321 4.64286 4.74190 4.85139 5.02004 5.04767 5.08137 5.15980 5.24254 5.33191 5.34393 5.37726 5.46708 5.49991 5.54450 5.64153 5.65474 5.80990 6.45198 6.46769 6.67526 7.41593 7.72082 7.91312 7.97906 8.44737 8.80819 9.26881 9.62307 10.70304 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.036335 B = 0.002382 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.429365 B =11754.301374 C =12000.204270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.156 3.844 3 C -0.110 4.110 4 C -0.118 4.118 5 C 0.459 3.541 6 O -0.515 6.515 7 O -0.325 6.325 8 C 0.058 3.942 9 C 0.446 3.554 10 O -0.558 6.558 11 N -0.579 5.579 12 C -0.309 4.309 13 H 0.122 0.878 14 C 0.045 3.955 15 N -0.874 5.874 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.268 1.268 20 C -0.123 4.123 21 C -0.157 4.157 22 C 0.520 3.480 23 O -0.537 6.537 24 N -0.723 5.723 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.373 0.627 35 H 0.276 0.724 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 -19.735 18.066 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.069 3.931 3 C -0.148 4.148 4 C -0.155 4.155 5 C 0.302 3.698 6 O -0.404 6.404 7 O -0.239 6.239 8 C -0.020 4.020 9 C 0.231 3.769 10 O -0.439 6.439 11 N -0.219 5.219 12 C -0.437 4.437 13 H 0.140 0.860 14 C -0.159 4.159 15 N -0.513 5.513 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.194 1.194 20 C -0.161 4.161 21 C -0.197 4.197 22 C 0.306 3.694 23 O -0.413 6.413 24 N -0.379 5.379 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.206 0.794 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.106 -20.215 17.321 26.621 hybrid contribution 0.941 1.266 0.563 1.675 sum 1.047 -18.950 17.884 26.078 Atomic orbital electron populations 1.22303 0.93390 1.03015 1.03493 1.21078 0.94474 0.91747 0.85759 1.21781 1.02369 0.92670 0.97988 1.21457 1.03853 0.88961 1.01261 1.23677 0.77988 0.88693 0.79455 1.90658 1.35588 1.77663 1.36521 1.86559 1.68016 1.23046 1.46315 1.22750 0.99364 0.80004 0.99843 1.19197 0.86586 0.83014 0.88066 1.90607 1.39536 1.69267 1.44537 1.42038 1.46049 1.10100 1.23714 1.19423 1.29940 0.93891 1.00449 0.86007 1.25044 0.97744 0.96095 0.97022 1.69612 1.43907 1.10314 1.27498 0.86673 0.81410 0.80220 0.81157 1.19398 1.19921 1.19367 1.22710 1.03069 0.93719 0.96580 1.22360 1.05179 0.98724 0.93410 1.20880 0.76031 0.81463 0.91012 1.90775 1.45365 1.47580 1.57617 1.46482 1.64200 1.15812 1.11427 0.90665 0.91818 0.91259 0.88998 0.89895 0.87861 0.86920 0.89421 0.89437 0.79387 0.91355 0.89451 0.88774 0.88009 0.87774 0.75037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 8.47 37.16 0.31 -0.40 16 2 C 0.16 0.81 0.87 -130.90 -0.11 0.70 16 3 C -0.11 -0.72 3.71 -26.73 -0.10 -0.82 16 4 C -0.12 -0.97 5.32 -27.88 -0.15 -1.12 16 5 C 0.46 6.04 7.96 36.00 0.29 6.33 16 6 O -0.52 -7.65 15.73 -18.75 -0.30 -7.95 16 7 O -0.33 -5.44 9.75 -45.88 -0.45 -5.88 16 8 C 0.06 1.00 5.94 36.00 0.21 1.22 16 9 C 0.45 10.15 7.86 -10.99 -0.09 10.07 16 10 O -0.56 -15.11 16.08 -14.12 -0.23 -15.34 16 11 N -0.58 -13.56 5.09 -10.97 -0.06 -13.62 16 12 C -0.31 -8.56 10.16 -14.94 -0.15 -8.71 16 13 H 0.12 3.85 7.39 -52.48 -0.39 3.47 16 14 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 15 N -0.87 -24.94 13.96 55.50 0.77 -24.16 16 16 Si 0.88 18.82 27.74 -169.99 -4.71 14.11 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 19 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 20 C -0.12 -0.49 6.21 -25.09 -0.16 -0.64 16 21 C -0.16 -0.84 6.86 -26.74 -0.18 -1.02 16 22 C 0.52 4.83 8.43 -10.86 -0.09 4.74 16 23 O -0.54 -7.55 18.03 5.56 0.10 -7.45 16 24 N -0.72 -5.19 5.39 -46.61 -0.25 -5.44 16 25 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.32 6.39 -51.93 -0.33 -0.01 16 28 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.10 0.75 6.90 -51.93 -0.36 0.39 16 31 H 0.11 0.76 6.43 -51.93 -0.33 0.43 16 32 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 33 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 34 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 35 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.09 0.34 7.91 -51.93 -0.41 -0.07 16 37 H 0.09 0.21 7.89 -51.93 -0.41 -0.20 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.41 2.87 7.69 -40.82 -0.31 2.55 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -36.34 339.50 -5.64 -41.98 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.33 Total: 7.17 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -0.31 Total: 11.46 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.47 Total: -43.21 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.87 Total: -36.61 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.34 -5.64 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320056903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.925 kcal (2) G-P(sol) polarization free energy of solvation -36.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds