Wall clock time and date at job start Fri Apr 10 2020 17:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37364 * 125.83455 * 2 1 4 4 N 1.29398 * 108.83273 * 179.87027 * 3 2 1 5 5 N 1.40170 * 108.13850 * 0.38626 * 4 3 2 6 6 C 1.46501 * 126.35006 * 179.75494 * 5 4 3 7 7 C 1.50700 * 109.47068 * 269.99780 * 6 5 4 8 8 O 1.20824 * 119.99894 * 359.97438 * 7 6 5 9 9 O 1.34232 * 119.99687 * 179.97438 * 7 6 5 10 10 C 1.45196 * 116.99795 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47305 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00122 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00347 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00104 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47234 * 180.02562 * 14 13 11 16 16 H 1.08004 * 119.99676 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00005 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99565 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00177 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47095 * 90.00066 * 19 17 15 21 21 H 1.48496 * 109.47142 * 209.99830 * 19 17 15 22 22 H 1.48499 * 109.47158 * 330.00175 * 19 17 15 23 23 C 1.34818 * 125.83407 * 180.30146 * 2 1 3 24 24 O 1.21813 * 126.29915 * 359.93868 * 23 2 1 25 25 H 1.09002 * 109.47391 * 269.69141 * 1 2 3 26 26 H 1.09001 * 109.46813 * 149.69197 * 1 2 3 27 27 H 1.09004 * 109.47041 * 29.69324 * 1 2 3 28 28 H 1.08004 * 125.58419 * 0.03361 * 3 2 1 29 29 H 1.08994 * 109.47168 * 30.00064 * 6 5 4 30 30 H 1.09008 * 109.47151 * 149.99601 * 6 5 4 31 31 H 1.08999 * 109.47786 * 300.00290 * 10 9 7 32 32 H 1.09002 * 109.46976 * 59.99942 * 10 9 7 33 33 H 0.97001 * 119.99703 * 0.02562 * 13 11 10 34 34 H 1.08997 * 109.47484 * 300.00430 * 14 13 11 35 35 H 1.09010 * 109.46985 * 60.00660 * 14 13 11 36 36 H 0.97003 * 119.99738 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0028 5 7 3.5344 -0.6661 -0.0043 6 6 4.7314 -1.5109 -0.0091 7 6 5.1411 -1.7934 -1.4316 8 8 4.4989 -1.3365 -2.3473 9 8 6.2195 -2.5527 -1.6811 10 6 6.5548 -2.7836 -3.0748 11 6 7.7851 -3.6498 -3.1587 12 8 8.3258 -4.0351 -2.1437 13 7 8.2840 -3.9973 -4.3615 14 6 9.4803 -4.8390 -4.4430 15 6 9.8283 -5.0788 -5.8896 16 1 9.2194 -4.6470 -6.6702 17 6 10.9239 -5.8493 -6.2164 18 7 11.2278 -6.0581 -7.4788 19 14 11.9766 -6.5966 -4.8663 20 1 11.4491 -7.9392 -4.5134 21 1 13.3767 -6.7248 -5.3441 22 1 11.9406 -5.7201 -3.6682 23 6 2.2543 -1.0930 -0.0058 24 8 1.8805 -2.2523 -0.0108 25 1 -0.3634 -0.0055 1.0276 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5091 28 1 1.9250 2.1374 0.0005 29 1 5.5416 -0.9959 0.5069 30 1 4.5153 -2.4501 0.5002 31 1 5.7231 -3.2842 -3.5706 32 1 6.7487 -1.8294 -3.5648 33 1 7.8513 -3.6895 -5.1733 34 1 10.3118 -4.3374 -3.9479 35 1 9.2874 -5.7931 -3.9524 36 1 11.9989 -6.5999 -7.7088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320212052.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:28 Heat of formation + Delta-G solvation = -90.090417 kcal Electronic energy + Delta-G solvation = -22991.755099 eV Core-core repulsion = 19092.125646 eV Total energy + Delta-G solvation = -3899.629453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.50430 -41.80947 -40.46605 -38.50967 -37.81839 -36.33111 -36.22377 -34.48146 -33.11792 -31.28339 -29.86597 -28.72557 -27.66569 -24.41805 -23.85120 -22.81365 -21.96338 -21.76671 -19.54108 -19.21843 -18.75489 -18.11267 -18.07389 -17.75986 -17.07994 -17.03792 -16.83720 -16.63157 -16.27846 -15.88556 -15.54886 -14.89819 -14.83011 -14.47046 -14.33889 -13.96090 -13.88620 -13.59373 -13.49176 -13.39359 -13.09817 -12.96697 -12.71655 -12.11767 -12.02492 -11.93661 -11.68475 -11.49995 -11.16237 -10.98527 -10.93361 -10.06877 -9.77357 -8.40959 -6.48819 0.40999 0.88358 0.96475 1.27182 1.33652 1.36405 1.46453 1.48935 1.56560 2.18728 2.27694 2.43483 2.94337 3.37587 3.45492 3.63250 3.96727 3.98319 4.03626 4.07551 4.09820 4.33715 4.53140 4.72367 4.77008 4.80642 4.93031 4.99139 5.06182 5.22170 5.37081 5.61752 6.03908 6.38272 6.50741 6.53358 6.68327 6.83865 7.09048 7.24231 8.73595 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.045405 B = 0.002322 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.526983 B =12058.136558 C =12189.852544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.558 5.558 3 C 0.287 3.713 4 N -0.312 5.312 5 N -0.453 5.453 6 C 0.174 3.826 7 C 0.448 3.552 8 O -0.526 6.526 9 O -0.337 6.337 10 C 0.059 3.941 11 C 0.507 3.493 12 O -0.574 6.574 13 N -0.697 5.697 14 C 0.232 3.768 15 C -0.549 4.549 16 H 0.060 0.940 17 C 0.025 3.975 18 N -0.930 5.930 19 Si 0.939 3.061 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.258 1.258 23 C 0.633 3.367 24 O -0.595 6.595 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.132 0.868 28 H 0.292 0.708 29 H 0.174 0.826 30 H 0.153 0.847 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.412 0.588 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.363 18.768 17.874 34.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.011 4.011 4 N -0.133 5.133 5 N -0.272 5.272 6 C 0.050 3.950 7 C 0.290 3.710 8 O -0.414 6.414 9 O -0.252 6.252 10 C -0.018 4.018 11 C 0.292 3.708 12 O -0.454 6.454 13 N -0.348 5.348 14 C 0.109 3.891 15 C -0.587 4.587 16 H 0.079 0.921 17 C -0.175 4.175 18 N -0.569 5.569 19 Si 0.762 3.238 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.182 1.182 23 C 0.332 3.668 24 O -0.472 6.472 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.150 0.850 28 H 0.307 0.693 29 H 0.191 0.809 30 H 0.171 0.829 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.249 0.751 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.278 17.963 18.156 33.242 hybrid contribution -0.202 -0.847 -0.703 1.119 sum -21.480 17.116 17.453 32.541 Atomic orbital electron populations 1.22204 0.71568 1.06028 1.05086 1.46140 1.10288 1.05857 1.66272 1.27204 0.84276 0.96204 0.93410 1.77068 1.20518 0.89634 1.26032 1.48424 1.05223 1.04553 1.69012 1.20981 0.87057 0.97684 0.89233 1.24732 0.77421 0.74590 0.94217 1.90677 1.53417 1.49681 1.47641 1.86521 1.44776 1.64379 1.29501 1.22735 0.96331 1.01895 0.80847 1.20471 0.85507 0.81120 0.83677 1.90681 1.62211 1.56546 1.36009 1.45866 1.29818 1.51438 1.07719 1.19192 0.83730 0.90044 0.96144 1.21270 1.13206 1.33228 0.90987 0.92140 1.25618 0.98264 0.95903 0.97724 1.69982 1.28679 1.39739 1.18497 0.85838 0.78482 0.79754 0.79723 1.19013 1.19848 1.18165 1.17078 0.82742 0.85603 0.81350 1.91060 1.78453 1.17346 1.60318 0.89048 0.91339 0.85010 0.69273 0.80897 0.82947 0.86425 0.85822 0.75131 0.96269 0.96541 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 11.05 127.77 1.41 1.84 16 2 N -0.56 -7.36 3.14 -683.67 -2.15 -9.51 16 3 C 0.29 2.29 12.66 179.82 2.28 4.56 16 4 N -0.31 -5.20 12.53 -59.41 -0.74 -5.94 16 5 N -0.45 -9.77 3.11 -481.77 -1.50 -11.27 16 6 C 0.17 3.34 6.98 85.63 0.60 3.94 16 7 C 0.45 11.85 8.03 71.24 0.57 12.42 16 8 O -0.53 -16.62 16.18 21.97 0.36 -16.27 16 9 O -0.34 -9.83 9.76 -45.08 -0.44 -10.27 16 10 C 0.06 1.67 5.94 71.23 0.42 2.10 16 11 C 0.51 18.99 7.91 87.66 0.69 19.68 16 12 O -0.57 -26.17 16.50 15.77 0.26 -25.91 16 13 N -0.70 -27.43 5.55 -466.78 -2.59 -30.02 16 14 C 0.23 11.23 4.50 85.64 0.38 11.61 16 15 C -0.55 -30.05 9.83 25.60 0.25 -29.80 16 16 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 17 C 0.03 1.43 5.47 84.65 0.46 1.89 16 18 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 19 Si 0.94 43.71 27.47 68.60 1.88 45.60 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.26 -11.80 6.54 99.48 0.65 -11.15 16 23 C 0.63 15.16 8.60 178.99 1.54 16.70 16 24 O -0.60 -19.03 17.71 -4.71 -0.08 -19.12 16 25 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 27 H 0.13 -0.47 8.14 -2.38 -0.02 -0.49 16 28 H 0.29 -1.72 8.06 -2.91 -0.02 -1.74 16 29 H 0.17 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.15 2.55 8.11 -2.38 -0.02 2.53 16 31 H 0.12 2.96 8.13 -2.39 -0.02 2.94 16 32 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 33 H 0.41 13.98 8.32 -92.71 -0.77 13.21 16 34 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 35 H 0.02 0.83 7.57 -2.38 -0.02 0.81 16 36 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -89.16 331.80 4.21 -84.95 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.31 Total: 7.94 kcal Atomic # 6 Polarization: 36.34 SS G_CDS: 8.61 Total: 44.95 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -6.68 Total: -111.87 kcal Atomic # 8 Polarization: -71.66 SS G_CDS: 0.09 Total: -71.56 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.88 Total: 45.60 kcal Total: -89.16 4.21 -84.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320212052.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.145 kcal (2) G-P(sol) polarization free energy of solvation -89.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds