Wall clock time and date at job start Fri Apr 10 2020 17:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48499 * 109.47071 * 269.99493 * 3 2 1 5 5 H 1.48498 * 109.47199 * 29.99829 * 3 2 1 6 6 H 1.48498 * 109.46770 * 149.99366 * 3 2 1 7 7 C 1.37879 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99635 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.64697 * 300.70314 * 9 7 2 11 11 C 1.55160 * 110.71783 * 177.56300 * 9 7 2 12 12 C 1.54913 * 101.58091 * 205.96351 * 11 9 7 13 13 N 1.47425 * 104.83513 * 37.00536 * 12 11 9 14 14 C 1.34774 * 125.64739 * 155.91010 * 13 12 11 15 15 O 1.21345 * 119.99986 * 179.97438 * 14 13 12 16 16 C 1.49456 * 119.99912 * 359.97438 * 14 13 12 17 17 O 1.21347 * 120.00063 * 6.74938 * 16 14 13 18 18 N 1.34780 * 119.99605 * 186.75293 * 16 14 13 19 19 C 1.47153 * 120.98251 * 7.70046 * 18 16 14 20 20 C 1.53717 * 108.16009 * 129.43018 * 19 18 16 21 21 O 1.42963 * 109.14714 * 52.53799 * 20 19 18 22 22 C 1.42962 * 114.16386 * 297.28916 * 21 20 19 23 23 C 1.47151 * 120.97931 * 187.97736 * 18 16 14 24 24 C 1.47020 * 108.70026 * 335.87586 * 13 12 11 25 25 H 0.96997 * 119.99963 * 0.02562 * 1 2 3 26 26 H 0.96694 * 113.99980 * 56.85397 * 10 9 7 27 27 H 1.08999 * 111.00238 * 324.03001 * 11 9 7 28 28 H 1.08999 * 111.00603 * 87.84543 * 11 9 7 29 29 H 1.09001 * 110.36532 * 155.85246 * 12 11 9 30 30 H 1.09006 * 110.36002 * 278.16562 * 12 11 9 31 31 H 1.08992 * 109.67915 * 249.20918 * 19 18 16 32 32 H 1.09002 * 109.68447 * 9.76553 * 19 18 16 33 33 H 1.08999 * 109.65826 * 292.57129 * 20 19 18 34 34 H 1.09001 * 109.43836 * 172.37174 * 20 19 18 35 35 H 1.09003 * 109.51211 * 302.64917 * 22 21 20 36 36 H 1.09008 * 109.55144 * 182.53188 * 22 21 20 37 37 H 1.08992 * 109.68366 * 350.24488 * 23 18 16 38 38 H 1.09007 * 109.67847 * 110.75279 * 23 18 16 39 39 H 1.09006 * 109.87809 * 241.63833 * 24 13 12 40 40 H 1.08993 * 109.88146 * 120.48078 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4082 -2.5933 1.1519 11 6 2.2322 -3.6995 -0.0596 12 6 1.3484 -4.7905 -0.7142 13 7 0.5272 -4.0681 -1.7027 14 6 -0.0387 -4.6094 -2.7995 15 8 -0.6977 -3.9168 -3.5469 16 6 0.1453 -6.0628 -3.0954 17 8 0.6988 -6.7808 -2.2888 18 7 -0.3034 -6.5758 -4.2581 19 6 -0.8245 -5.7015 -5.3209 20 6 -0.1209 -6.0740 -6.6358 21 8 -0.2476 -7.4813 -6.8531 22 6 0.3805 -8.2868 -5.8528 23 6 -0.2921 -8.0273 -4.5000 24 6 0.4274 -2.6595 -1.2934 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2238 -1.8665 1.2369 27 1 3.0943 -3.4679 -0.6851 28 1 2.5467 -3.9985 0.9403 29 1 1.9705 -5.5358 -1.2097 30 1 0.7125 -5.2630 0.0345 31 1 -1.8998 -5.8480 -5.4223 32 1 -0.6170 -4.6602 -5.0743 33 1 0.9346 -5.8086 -6.5749 34 1 -0.5856 -5.5349 -7.4613 35 1 1.4378 -8.0295 -5.7891 36 1 0.2773 -9.3399 -6.1146 37 1 0.2679 -8.5268 -3.7096 38 1 -1.3148 -8.4041 -4.5196 39 1 -0.6147 -2.4015 -1.1043 40 1 0.8347 -2.0170 -2.0739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326247914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:39 Heat of formation + Delta-G solvation = -155.628669 kcal Electronic energy + Delta-G solvation = -25318.754929 eV Core-core repulsion = 21519.823867 eV Total energy + Delta-G solvation = -3798.931062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.17296 -40.53147 -39.31632 -39.04068 -36.50561 -35.60327 -34.21968 -32.47754 -31.94175 -29.81057 -29.35884 -27.56901 -25.70937 -25.06918 -23.76887 -22.24471 -21.44609 -20.43153 -19.18327 -18.43616 -18.33486 -17.59227 -17.28196 -17.15338 -16.92411 -16.42523 -16.19474 -16.07866 -15.68970 -15.53279 -14.87198 -14.84271 -14.74844 -14.35947 -14.05634 -13.59886 -13.51521 -13.45237 -13.10346 -12.87696 -12.62577 -12.42268 -12.35811 -12.33334 -12.25941 -12.08825 -11.74251 -11.30566 -11.17927 -10.68390 -10.46455 -10.25196 -9.87955 -9.70052 -8.28511 -6.44784 0.21730 1.09227 1.42630 1.45280 1.54687 1.97162 2.20638 2.38352 2.84394 2.96985 3.01872 3.69209 3.75515 3.91091 4.01942 4.05386 4.10308 4.19743 4.20852 4.30884 4.46992 4.58185 4.64033 4.68814 4.75613 4.79393 4.89142 4.94711 5.03710 5.07302 5.22165 5.30031 5.43004 5.71683 5.80873 5.99678 6.05326 6.23821 6.48343 6.63528 6.80197 7.26594 7.34675 8.77849 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.003863 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.168535 B = 7246.165854 C = 7774.104947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.029 3.971 3 Si 0.965 3.035 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.558 4.558 8 H 0.069 0.931 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.115 4.115 12 C 0.111 3.889 13 N -0.581 5.581 14 C 0.502 3.498 15 O -0.545 6.545 16 C 0.517 3.483 17 O -0.529 6.529 18 N -0.586 5.586 19 C 0.040 3.960 20 C 0.053 3.947 21 O -0.391 6.391 22 C 0.052 3.948 23 C 0.070 3.930 24 C 0.118 3.882 25 H 0.272 0.728 26 H 0.378 0.622 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.055 0.945 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.138 0.862 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -13.501 -10.719 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.172 4.172 3 Si 0.790 3.210 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.397 6.397 11 C -0.152 4.152 12 C -0.010 4.010 13 N -0.313 5.313 14 C 0.287 3.713 15 O -0.426 6.426 16 C 0.300 3.700 17 O -0.406 6.406 18 N -0.320 5.320 19 C -0.082 4.082 20 C -0.025 4.025 21 O -0.310 6.310 22 C -0.026 4.026 23 C -0.051 4.051 24 C -0.005 4.005 25 H 0.082 0.918 26 H 0.229 0.771 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.074 0.926 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.771 -14.077 -10.785 17.751 hybrid contribution -0.259 1.857 0.314 1.901 sum 0.512 -12.221 -10.470 16.101 Atomic orbital electron populations 1.69731 1.07068 1.28695 1.49999 1.25794 0.95798 1.02724 0.92892 0.85447 0.78744 0.78611 0.78207 1.20209 1.20745 1.19136 1.21813 0.94048 0.91053 1.52726 0.91280 1.19711 0.86634 0.93551 0.80814 1.86100 1.53660 1.52407 1.47561 1.22837 0.97179 0.93575 1.01651 1.22592 0.93199 0.94803 0.90453 1.48768 1.47939 1.12094 1.22461 1.20170 0.80956 0.88834 0.81382 1.90487 1.41476 1.63472 1.47149 1.19815 0.79669 0.87718 0.82825 1.90689 1.41546 1.60985 1.47368 1.48067 1.60391 1.09088 1.14489 1.23543 0.99744 0.98192 0.86715 1.23183 1.00311 0.81990 0.96982 1.87942 1.77584 1.17173 1.48266 1.23113 0.95864 0.97733 0.85844 1.22675 1.03827 0.78560 1.00027 1.22784 1.00272 0.78319 0.99090 0.91838 0.77143 0.89461 0.89088 0.88158 0.91385 0.89789 0.85618 0.92627 0.85294 0.92561 0.84446 0.87810 0.88853 0.93833 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.22 10.97 21.45 0.24 -47.98 16 2 C 0.03 1.48 5.27 84.65 0.45 1.92 16 3 Si 0.96 40.83 29.54 68.60 2.03 42.85 16 4 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.56 -28.63 8.12 25.60 0.21 -28.42 16 8 H 0.07 3.45 7.77 -2.91 -0.02 3.42 16 9 C 0.23 11.22 0.86 -10.35 -0.01 11.21 16 10 O -0.59 -29.79 13.09 -148.98 -1.95 -31.74 16 11 C -0.11 -4.53 6.22 31.99 0.20 -4.33 16 12 C 0.11 4.16 5.95 86.86 0.52 4.67 16 13 N -0.58 -24.25 3.33 -813.36 -2.71 -26.96 16 14 C 0.50 19.61 7.77 87.27 0.68 20.29 16 15 O -0.54 -22.56 13.54 -3.23 -0.04 -22.61 16 16 C 0.52 17.04 7.70 87.27 0.67 17.72 16 17 O -0.53 -18.22 13.37 -3.24 -0.04 -18.26 16 18 N -0.59 -15.42 3.01 -818.12 -2.47 -17.88 16 19 C 0.04 0.95 6.16 86.50 0.53 1.48 16 20 C 0.05 0.99 7.00 72.22 0.51 1.49 16 21 O -0.39 -7.56 10.74 -148.98 -1.60 -9.16 16 22 C 0.05 0.80 6.98 72.08 0.50 1.30 16 23 C 0.07 1.35 6.65 86.35 0.57 1.92 16 24 C 0.12 5.66 5.39 86.73 0.47 6.13 16 25 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 26 H 0.38 19.83 7.17 -74.06 -0.53 19.30 16 27 H 0.09 3.25 8.04 -2.39 -0.02 3.23 16 28 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 29 H 0.10 3.41 6.36 -2.39 -0.02 3.40 16 30 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.13 3.70 4.49 -35.06 -0.16 3.54 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.10 2.03 7.06 -2.39 -0.02 2.01 16 38 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.04 2.30 8.01 -2.38 -0.02 2.28 16 40 H 0.05 2.64 7.82 -2.39 -0.02 2.62 16 Total: -1.00 -60.60 323.15 -0.86 -61.45 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.39 Total: 34.90 kcal Atomic # 6 Polarization: 30.10 SS G_CDS: 5.29 Total: 35.40 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -4.94 Total: -92.83 kcal Atomic # 8 Polarization: -78.14 SS G_CDS: -3.64 Total: -81.77 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -60.60 -0.86 -61.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326247914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.175 kcal (2) G-P(sol) polarization free energy of solvation -60.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds