Wall clock time and date at job start Fri Apr 10 2020 17:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00468 * 2 1 4 4 H 1.48506 * 109.47201 * 270.00133 * 3 2 1 5 5 H 1.48507 * 109.47113 * 29.99542 * 3 2 1 6 6 H 1.48504 * 109.47471 * 149.99828 * 3 2 1 7 7 C 1.37883 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00198 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99623 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.77627 * 298.21211 * 9 7 2 11 11 C 1.55156 * 110.72094 * 61.44880 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84557 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 C 1.34776 * 125.62717 * 204.04395 * 13 12 11 15 15 O 1.21276 * 119.99876 * 180.02562 * 14 13 12 16 16 C 1.50704 * 120.00169 * 0.02852 * 14 13 12 17 17 N 1.46504 * 109.46877 * 179.97438 * 16 14 13 18 18 C 1.46091 * 118.72629 * 269.72889 * 17 16 14 19 19 C 1.53218 * 109.81826 * 161.46831 * 18 17 16 20 20 O 1.43244 * 108.50957 * 49.54504 * 19 18 17 21 21 C 1.42967 * 112.98864 * 291.45287 * 20 19 18 22 22 C 1.33866 * 118.72951 * 90.00314 * 17 16 14 23 23 O 1.21286 * 118.83154 * 1.87776 * 22 17 16 24 24 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 25 25 H 0.97005 * 119.99288 * 0.02562 * 1 2 3 26 26 H 0.96700 * 113.99657 * 61.78848 * 10 9 7 27 27 H 1.09002 * 111.00677 * 271.94141 * 11 9 7 28 28 H 1.09002 * 111.00564 * 35.75399 * 11 9 7 29 29 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 30 30 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 31 31 H 1.09002 * 109.47089 * 299.99627 * 16 14 13 32 32 H 1.09000 * 109.46830 * 59.99916 * 16 14 13 33 33 H 1.08998 * 109.40134 * 281.78103 * 18 17 16 34 34 H 1.09000 * 109.39328 * 41.51147 * 18 17 16 35 35 H 1.08998 * 109.82871 * 289.75042 * 19 18 17 36 36 H 1.09002 * 109.66514 * 169.24232 * 19 18 17 37 37 H 1.08998 * 109.41222 * 289.50148 * 21 20 19 38 38 H 1.08996 * 109.41600 * 169.70380 * 21 20 19 39 39 H 1.08998 * 109.88206 * 239.55467 * 24 13 12 40 40 H 1.09007 * 109.88177 * 118.39340 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4500 -2.6221 1.1777 11 6 0.3763 -2.6281 -1.2745 12 6 0.2717 -4.1661 -1.4268 13 7 1.5929 -4.6763 -1.0159 14 6 2.1328 -5.8519 -1.3941 15 8 3.2316 -6.1716 -0.9927 16 6 1.3710 -6.7691 -2.3158 17 7 2.1665 -7.9719 -2.5747 18 6 3.0795 -7.9778 -3.7152 19 6 4.1167 -9.0926 -3.5445 20 8 3.4295 -10.3078 -3.2236 21 6 2.8292 -10.2839 -1.9263 22 6 2.0246 -9.0248 -1.7604 23 8 1.2180 -8.9609 -0.8569 24 6 2.2232 -3.6910 -0.1253 25 1 -0.4849 0.8401 -0.0004 26 1 -0.2297 -1.9398 1.2638 27 1 -0.6067 -2.1829 -1.1207 28 1 0.8738 -2.1831 -2.1362 29 1 -0.5068 -4.5599 -0.7732 30 1 0.0675 -4.4316 -2.4640 31 1 0.4270 -7.0509 -1.8494 32 1 1.1725 -6.2557 -3.2566 33 1 2.5130 -8.1430 -4.6317 34 1 3.5901 -7.0167 -3.7751 35 1 4.8044 -8.8375 -2.7383 36 1 4.6731 -9.2213 -4.4730 37 1 3.6091 -10.3184 -1.1656 38 1 2.1758 -11.1490 -1.8134 39 1 3.1677 -3.3553 -0.5532 40 1 2.3950 -4.1344 0.8556 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326422129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:42 Heat of formation + Delta-G solvation = -146.426544 kcal Electronic energy + Delta-G solvation = -25043.875757 eV Core-core repulsion = 21245.343730 eV Total energy + Delta-G solvation = -3798.532028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91798 -39.34254 -37.84947 -37.29447 -35.34919 -34.35784 -32.25940 -30.74471 -30.04117 -29.09982 -28.25737 -26.32741 -24.78397 -24.02738 -22.37290 -20.05721 -19.34714 -18.80298 -17.89314 -17.37427 -17.08234 -16.92034 -16.00174 -15.68472 -15.37155 -15.05001 -14.97406 -14.49287 -14.23103 -14.14988 -13.62904 -13.59353 -13.26927 -13.01929 -12.47743 -12.10430 -11.98675 -11.94846 -11.57837 -11.49464 -11.42578 -11.39410 -10.92447 -10.76788 -10.67848 -10.52157 -10.16296 -9.84402 -9.60102 -9.41593 -8.81681 -8.69225 -8.27054 -8.07834 -6.32711 -4.40442 2.32045 2.61103 2.95356 3.16710 3.24741 3.28946 3.41864 3.58310 4.11260 4.23479 4.49413 4.71167 4.82345 4.88599 4.95633 4.98655 5.13406 5.18701 5.30909 5.37687 5.46821 5.48621 5.68338 5.84111 5.96206 5.97764 6.17798 6.41859 6.47813 6.63228 6.84893 6.90918 7.16450 7.24099 7.30248 7.68953 7.89414 7.97709 8.03558 8.52408 8.62367 9.26430 9.35612 10.74800 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.003398 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.694380 B = 8238.853732 C = 8532.794817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.584 6.584 11 C -0.134 4.134 12 C 0.092 3.908 13 N -0.606 5.606 14 C 0.508 3.492 15 O -0.550 6.550 16 C 0.095 3.905 17 N -0.586 5.586 18 C 0.083 3.917 19 C 0.044 3.956 20 O -0.373 6.373 21 C 0.053 3.947 22 C 0.492 3.508 23 O -0.538 6.538 24 C 0.124 3.876 25 H 0.268 0.732 26 H 0.382 0.618 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.492 -13.801 -10.192 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.393 6.393 11 C -0.173 4.173 12 C -0.031 4.031 13 N -0.339 5.339 14 C 0.295 3.705 15 O -0.429 6.429 16 C -0.031 4.031 17 N -0.319 5.319 18 C -0.040 4.040 19 C -0.033 4.033 20 O -0.291 6.291 21 C -0.026 4.026 22 C 0.280 3.720 23 O -0.415 6.415 24 C 0.002 3.998 25 H 0.078 0.922 26 H 0.232 0.768 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.110 0.890 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.918 -14.590 -9.557 17.684 hybrid contribution 0.039 1.872 -0.015 1.873 sum 2.957 -12.718 -9.572 16.190 Atomic orbital electron populations 1.69699 1.05946 1.27673 1.50130 1.24986 0.95038 0.99524 0.93440 0.86411 0.79927 0.82384 0.78229 1.20480 1.20982 1.19687 1.21505 0.93669 0.90181 1.52018 0.91788 1.19459 0.86968 0.90629 0.82276 1.86152 1.51656 1.56537 1.44984 1.23300 1.02975 0.90002 1.00972 1.22585 0.84355 0.97829 0.98315 1.48661 1.19474 1.18000 1.47762 1.20536 0.86642 0.81075 0.82283 1.90641 1.20946 1.74001 1.57314 1.21358 0.95851 0.85576 1.00360 1.47036 1.42430 1.13301 1.29179 1.22216 0.92094 1.01198 0.88516 1.23051 0.93594 0.83572 1.03064 1.88157 1.71076 1.36676 1.33179 1.22811 0.97036 0.96114 0.86647 1.20967 0.83827 0.85619 0.81600 1.90761 1.36136 1.82737 1.31857 1.22070 0.96653 0.88389 0.92667 0.92186 0.76775 0.89253 0.91409 0.91642 0.92125 0.86671 0.87537 0.90420 0.89334 0.91282 0.86607 0.88993 0.85187 0.91017 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 10.69 55.43 0.59 -21.96 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.82 8.22 -34.44 -0.28 -14.11 16 8 H 0.06 1.66 7.57 -52.49 -0.40 1.27 16 9 C 0.25 5.88 0.84 -89.94 -0.08 5.81 16 10 O -0.58 -14.64 13.08 -35.23 -0.46 -15.10 16 11 C -0.13 -2.79 5.46 -24.58 -0.13 -2.92 16 12 C 0.09 1.61 6.68 -2.50 -0.02 1.59 16 13 N -0.61 -11.89 3.33 -170.49 -0.57 -12.45 16 14 C 0.51 9.49 7.91 -10.98 -0.09 9.40 16 15 O -0.55 -11.93 16.76 5.56 0.09 -11.83 16 16 C 0.09 1.34 4.80 -5.19 -0.02 1.31 16 17 N -0.59 -7.79 2.32 -175.66 -0.41 -8.20 16 18 C 0.08 0.78 6.63 -4.15 -0.03 0.75 16 19 C 0.04 0.37 6.91 37.27 0.26 0.62 16 20 O -0.37 -3.71 10.85 -35.23 -0.38 -4.09 16 21 C 0.05 0.56 6.98 35.83 0.25 0.81 16 22 C 0.49 7.15 7.58 -11.56 -0.09 7.06 16 23 O -0.54 -9.87 16.36 5.55 0.09 -9.78 16 24 C 0.12 2.80 6.22 -3.07 -0.02 2.78 16 25 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 26 H 0.38 9.49 7.49 45.56 0.34 9.83 16 27 H 0.09 1.94 7.54 -51.93 -0.39 1.55 16 28 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 29 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.06 0.84 7.48 -51.93 -0.39 0.45 16 31 H 0.12 1.68 7.24 -51.93 -0.38 1.31 16 32 H 0.11 1.14 7.74 -51.93 -0.40 0.74 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.84 8.13 -51.93 -0.42 0.41 16 35 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.63 7.66 -51.93 -0.40 1.24 16 40 H 0.06 1.45 8.07 -51.93 -0.42 1.03 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -32.10 331.82 -6.34 -38.44 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -4.94 Total: 10.19 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -0.34 Total: 14.86 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.38 Total: -42.62 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.66 Total: -40.80 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.10 -6.34 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326422129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.988 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds