Wall clock time and date at job start Fri Apr 10 2020 17:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42897 * 110.63957 * 61.40714 * 9 7 2 11 11 C 1.55160 * 110.71656 * 298.26718 * 9 7 2 12 12 C 1.54913 * 101.57624 * 206.13323 * 11 9 7 13 13 N 1.47423 * 104.83089 * 37.01185 * 12 11 9 14 14 C 1.34785 * 125.64558 * 155.90580 * 13 12 11 15 15 O 1.21282 * 119.99607 * 179.97438 * 14 13 12 16 16 C 1.50695 * 119.99918 * 359.97011 * 14 13 12 17 17 N 1.46505 * 109.46782 * 180.02562 * 16 14 13 18 18 C 1.46085 * 118.72965 * 90.00342 * 17 16 14 19 19 C 1.53023 * 109.92817 * 161.61657 * 18 17 16 20 20 O 1.43252 * 108.66746 * 49.16051 * 19 18 17 21 21 C 1.42971 * 112.98686 * 291.64206 * 20 19 18 22 22 C 1.33869 * 118.72873 * 269.73138 * 17 16 14 23 23 O 1.21282 * 118.83392 * 1.90661 * 22 17 16 24 24 C 1.47020 * 108.70489 * 335.86786 * 13 12 11 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 0.96698 * 114.00670 * 300.69875 * 10 9 7 27 27 H 1.08989 * 111.00516 * 324.20630 * 11 9 7 28 28 H 1.08995 * 111.00355 * 88.06613 * 11 9 7 29 29 H 1.09003 * 110.36279 * 155.84748 * 12 11 9 30 30 H 1.08990 * 110.36815 * 278.16971 * 12 11 9 31 31 H 1.09000 * 109.47787 * 300.00142 * 16 14 13 32 32 H 1.08997 * 109.47230 * 60.00325 * 16 14 13 33 33 H 1.08995 * 109.39869 * 281.75685 * 18 17 16 34 34 H 1.09002 * 109.39813 * 41.47692 * 18 17 16 35 35 H 1.08995 * 109.60698 * 168.91636 * 19 18 17 36 36 H 1.09004 * 109.60065 * 289.24634 * 19 18 17 37 37 H 1.09000 * 109.41318 * 169.70084 * 21 20 19 38 38 H 1.09002 * 109.41354 * 289.55976 * 21 20 19 39 39 H 1.09002 * 109.88085 * 241.63975 * 24 13 12 40 40 H 1.09002 * 109.87937 * 120.47931 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4499 -2.6130 -1.1832 11 6 0.3758 -2.6334 1.2688 12 6 0.2712 -4.1723 1.4134 13 7 1.5924 -4.6806 1.0020 14 6 2.1323 -5.8577 1.3758 15 8 3.2317 -6.1753 0.9739 16 6 1.3701 -6.7788 2.2930 17 7 2.1657 -7.9824 2.5476 18 6 3.0820 -7.9908 3.6853 19 6 3.4547 -9.4309 4.0443 20 8 3.8516 -10.1133 2.8489 21 6 2.7686 -10.3216 1.9391 22 6 2.0208 -9.0340 1.7320 23 8 1.2626 -8.9433 0.7897 24 6 2.2231 -3.6915 0.1158 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2040 -1.9078 -1.2839 27 1 0.8733 -2.1928 2.1327 28 1 -0.6071 -2.1877 1.1164 29 1 0.0663 -4.4428 2.4493 30 1 -0.5067 -4.5629 0.7575 31 1 1.1705 -6.2695 3.2358 32 1 0.4266 -7.0589 1.8246 33 1 3.9846 -7.4369 3.4273 34 1 2.6009 -7.5174 4.5412 35 1 4.2807 -9.4285 4.7554 36 1 2.5934 -9.9323 4.4857 37 1 3.1598 -10.6739 0.9847 38 1 2.0889 -11.0682 2.3499 39 1 2.3953 -4.1308 -0.8668 40 1 3.1675 -3.3577 0.5456 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326422130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:43 Heat of formation + Delta-G solvation = -145.424743 kcal Electronic energy + Delta-G solvation = -25020.718014 eV Core-core repulsion = 21222.229427 eV Total energy + Delta-G solvation = -3798.488586 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91861 -39.31558 -37.85884 -37.26226 -35.35436 -34.34150 -32.23520 -30.76814 -30.03952 -29.08879 -28.24045 -26.32656 -24.77452 -24.02663 -22.35809 -20.09751 -19.37767 -18.64185 -17.92021 -17.41829 -17.12060 -16.86440 -16.00008 -15.66566 -15.39396 -14.98087 -14.90372 -14.70563 -14.20918 -14.03599 -13.71516 -13.54841 -13.10832 -13.01193 -12.54063 -12.08991 -12.02660 -11.85517 -11.66574 -11.44702 -11.40367 -11.37232 -10.90729 -10.80103 -10.65564 -10.53755 -10.14512 -9.78903 -9.61655 -9.39676 -8.79473 -8.67300 -8.25231 -8.04043 -6.31457 -4.39418 2.33026 2.57913 3.00000 3.20005 3.24864 3.28396 3.44565 3.58866 4.09939 4.24576 4.48345 4.64515 4.78493 4.86606 4.93128 4.98534 5.03874 5.13910 5.27708 5.38905 5.50288 5.56535 5.70415 5.86136 5.97176 5.99358 6.20017 6.44677 6.47679 6.66641 6.87711 6.93889 7.16667 7.26932 7.32407 7.70241 7.89602 7.98794 8.07299 8.57455 8.63573 9.28050 9.37552 10.75834 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.003375 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.740823 B = 8294.089852 C = 8546.502006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.585 6.585 11 C -0.133 4.133 12 C 0.092 3.908 13 N -0.607 5.607 14 C 0.507 3.493 15 O -0.546 6.546 16 C 0.096 3.904 17 N -0.586 5.586 18 C 0.078 3.922 19 C 0.046 3.954 20 O -0.368 6.368 21 C 0.055 3.945 22 C 0.491 3.509 23 O -0.536 6.536 24 C 0.124 3.876 25 H 0.269 0.731 26 H 0.383 0.617 27 H 0.067 0.933 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -14.780 11.619 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.172 4.172 12 C -0.030 4.030 13 N -0.341 5.341 14 C 0.294 3.706 15 O -0.424 6.424 16 C -0.030 4.030 17 N -0.319 5.319 18 C -0.045 4.045 19 C -0.031 4.031 20 O -0.286 6.286 21 C -0.025 4.025 22 C 0.278 3.722 23 O -0.413 6.413 24 C 0.002 3.998 25 H 0.079 0.921 26 H 0.233 0.767 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.149 0.851 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.307 -15.471 10.812 18.920 hybrid contribution -0.227 1.737 0.234 1.767 sum 1.081 -13.734 11.046 17.658 Atomic orbital electron populations 1.69685 1.05932 1.27779 1.50128 1.24988 0.95044 0.99516 0.93442 0.86465 0.79543 0.82007 0.78908 1.19976 1.21091 1.20068 1.21490 0.93679 0.90214 1.52087 0.91822 1.19446 0.86944 0.90658 0.82281 1.86136 1.53800 1.54311 1.45155 1.23288 1.02949 0.89996 1.00960 1.22560 0.84403 0.97858 0.98201 1.48651 1.19416 1.17871 1.48114 1.20526 0.86708 0.81089 0.82305 1.90669 1.20804 1.74013 1.56885 1.21372 0.95649 0.85568 1.00433 1.47026 1.42168 1.13368 1.29342 1.22238 0.94664 0.98944 0.88626 1.23003 1.01886 0.90438 0.87779 1.88213 1.32949 1.77827 1.29639 1.22805 0.89694 0.93522 0.96449 1.20981 0.83030 0.86140 0.82030 1.90766 1.38456 1.83059 1.29057 1.22060 0.96624 0.88292 0.92786 0.92124 0.76689 0.91437 0.89284 0.92229 0.91700 0.87584 0.86798 0.89953 0.89488 0.86570 0.91832 0.85093 0.89276 0.92180 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.68 10.66 55.43 0.59 -22.09 16 2 C 0.07 1.85 5.27 -17.82 -0.09 1.75 16 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.96 8.21 -34.44 -0.28 -14.25 16 8 H 0.06 1.67 7.57 -52.49 -0.40 1.27 16 9 C 0.25 5.95 0.85 -89.94 -0.08 5.87 16 10 O -0.59 -14.80 13.09 -35.23 -0.46 -15.26 16 11 C -0.13 -2.81 5.48 -24.58 -0.13 -2.94 16 12 C 0.09 1.63 6.68 -2.53 -0.02 1.62 16 13 N -0.61 -12.14 3.33 -170.53 -0.57 -12.71 16 14 C 0.51 9.74 7.91 -10.98 -0.09 9.65 16 15 O -0.55 -12.38 16.76 5.56 0.09 -12.28 16 16 C 0.10 1.36 4.78 -5.19 -0.02 1.33 16 17 N -0.59 -7.78 2.32 -175.80 -0.41 -8.19 16 18 C 0.08 0.74 6.67 -4.25 -0.03 0.71 16 19 C 0.05 0.33 6.89 37.17 0.26 0.59 16 20 O -0.37 -3.86 10.86 -35.23 -0.38 -4.24 16 21 C 0.05 0.57 6.99 35.83 0.25 0.82 16 22 C 0.49 7.11 7.58 -11.57 -0.09 7.02 16 23 O -0.54 -9.88 16.38 5.56 0.09 -9.79 16 24 C 0.12 2.86 6.22 -3.07 -0.02 2.84 16 25 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 26 H 0.38 9.61 7.41 45.56 0.34 9.95 16 27 H 0.07 1.44 8.04 -51.94 -0.42 1.03 16 28 H 0.09 1.95 7.55 -51.93 -0.39 1.55 16 29 H 0.06 0.83 7.48 -51.93 -0.39 0.44 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.11 1.11 7.63 -51.93 -0.40 0.71 16 32 H 0.11 1.64 7.28 -51.93 -0.38 1.26 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.56 7.99 -51.93 -0.41 0.15 16 35 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 37 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 40 H 0.07 1.66 7.66 -51.93 -0.40 1.27 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -33.15 331.58 -6.35 -39.50 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.93 Total: 9.99 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: -0.35 Total: 15.02 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.38 Total: -42.99 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -0.66 Total: -41.57 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.15 -6.35 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326422130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.927 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds