Wall clock time and date at job start Fri Apr 10 2020 17:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99902 * 2 1 4 4 H 1.48498 * 109.46810 * 269.99488 * 3 2 1 5 5 H 1.48496 * 109.46910 * 29.99873 * 3 2 1 6 6 H 1.48498 * 109.47082 * 149.99895 * 3 2 1 7 7 C 1.37880 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99858 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.89207 * 62.42270 * 9 7 2 11 11 C 1.55163 * 111.03626 * 186.33044 * 9 7 2 12 12 C 1.54329 * 103.02084 * 153.39432 * 11 9 7 13 13 N 1.47019 * 107.26632 * 338.13831 * 12 11 9 14 14 C 1.34784 * 125.64840 * 178.85089 * 13 12 11 15 15 O 1.21346 * 119.99779 * 179.69126 * 14 13 12 16 16 C 1.49449 * 119.99546 * 359.69464 * 14 13 12 17 17 O 1.21341 * 120.00649 * 0.26924 * 16 14 13 18 18 N 1.34784 * 119.99546 * 179.97438 * 16 14 13 19 19 C 1.47060 * 120.80696 * 179.97438 * 18 16 14 20 20 C 1.53339 * 108.40604 * 129.63628 * 19 18 16 21 21 C 1.53138 * 109.01053 * 52.73305 * 20 19 18 22 22 C 1.53078 * 109.42855 * 300.25098 * 21 20 19 23 23 O 1.42128 * 120.81349 * 359.71856 * 18 16 14 24 24 C 1.47418 * 108.70260 * 358.58794 * 13 12 11 25 25 H 0.97000 * 119.99844 * 359.97438 * 1 2 3 26 26 H 0.96696 * 113.99851 * 297.57785 * 10 9 7 27 27 H 1.09003 * 110.71425 * 271.94886 * 11 9 7 28 28 H 1.08998 * 110.72039 * 35.21962 * 11 9 7 29 29 H 1.09003 * 109.99010 * 218.66318 * 12 11 9 30 30 H 1.09007 * 109.78200 * 97.49554 * 12 11 9 31 31 H 1.09008 * 109.67092 * 249.35757 * 19 18 16 32 32 H 1.08994 * 109.68493 * 9.89871 * 19 18 16 33 33 H 1.08998 * 109.54475 * 172.59457 * 20 19 18 34 34 H 1.09000 * 109.54165 * 292.87309 * 20 19 18 35 35 H 1.09004 * 109.47572 * 60.23430 * 21 20 19 36 36 H 1.08996 * 109.48308 * 180.26016 * 21 20 19 37 37 H 1.08999 * 109.48971 * 179.97438 * 22 21 20 38 38 H 1.08992 * 109.49271 * 299.99861 * 22 21 20 39 39 H 1.09004 * 110.36847 * 143.20116 * 24 13 12 40 40 H 1.09001 * 110.36622 * 265.40530 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4615 -2.6316 -1.1831 11 6 2.2191 -3.7011 0.1609 12 6 1.3286 -4.7801 0.8126 13 7 0.2055 -4.0864 1.4598 14 6 -0.8079 -4.6796 2.1215 15 8 -1.6823 -4.0044 2.6235 16 6 -0.8543 -6.1689 2.2370 17 8 0.0227 -6.8438 1.7393 18 7 -1.8674 -6.7621 2.8992 19 6 -1.9312 -8.2261 3.0232 20 6 -2.1508 -8.5778 4.4995 21 6 -3.3644 -7.8033 5.0215 22 6 -3.1109 -6.3008 4.8753 23 8 -2.8973 -5.9879 3.4991 24 6 0.3746 -2.6342 1.2706 25 1 -0.4850 0.8401 0.0004 26 1 -0.2244 -1.9564 -1.2760 27 1 2.5842 -4.0344 -0.8106 28 1 3.0493 -3.4427 0.8181 29 1 1.8999 -5.3351 1.5568 30 1 0.9532 -5.4600 0.0477 31 1 -2.7598 -8.6091 2.4274 32 1 -0.9957 -8.6650 2.6765 33 1 -2.3321 -9.6483 4.5962 34 1 -1.2672 -8.3026 5.0752 35 1 -4.2476 -8.0806 4.4460 36 1 -3.5248 -8.0443 6.0724 37 1 -3.9744 -5.7485 5.2462 38 1 -2.2277 -6.0233 5.4505 39 1 -0.5930 -2.1565 1.1165 40 1 0.8804 -2.1959 2.1310 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326529082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:46 Heat of formation + Delta-G solvation = -98.898922 kcal Electronic energy + Delta-G solvation = -25353.042408 eV Core-core repulsion = 21556.571333 eV Total energy + Delta-G solvation = -3796.471075 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 298.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42327 -38.99911 -37.88358 -37.08135 -34.26964 -34.07660 -32.96571 -32.22146 -30.15528 -28.05688 -27.73144 -25.84245 -24.83796 -23.51403 -22.06414 -20.52615 -19.69656 -19.41636 -17.44140 -17.19605 -17.06024 -16.19515 -15.72599 -15.30033 -15.17234 -14.94202 -14.67301 -14.55676 -14.31036 -14.11412 -13.38685 -13.21705 -13.01971 -12.86642 -12.67964 -12.28285 -11.64927 -11.64282 -11.52610 -11.45453 -11.05350 -11.03988 -11.02814 -10.73935 -10.56025 -10.48006 -10.44742 -10.17800 -9.34066 -9.10412 -8.95905 -8.67599 -8.36002 -7.82006 -6.27068 -4.36736 1.67427 1.81202 3.18041 3.23928 3.29728 3.32179 3.64337 4.22515 4.30354 4.41374 4.46279 4.50789 4.77373 4.98684 5.01000 5.08580 5.29523 5.39092 5.45144 5.53057 5.57169 5.62287 5.82959 5.83427 5.86753 6.11244 6.26332 6.38469 6.55913 6.76330 6.86167 6.88945 7.08742 7.23142 7.34593 7.73993 7.74791 8.03573 8.10722 8.55829 8.67560 9.31099 9.39709 10.80075 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.003854 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.309418 B = 7264.060627 C = 7820.506222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.581 6.581 11 C -0.121 4.121 12 C 0.111 3.889 13 N -0.580 5.580 14 C 0.509 3.491 15 O -0.511 6.511 16 C 0.531 3.469 17 O -0.507 6.507 18 N -0.463 5.463 19 C 0.101 3.899 20 C -0.139 4.139 21 C -0.154 4.154 22 C 0.025 3.975 23 O -0.109 6.109 24 C 0.095 3.905 25 H 0.270 0.730 26 H 0.381 0.619 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 -14.945 9.102 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.389 6.389 11 C -0.159 4.159 12 C -0.012 4.012 13 N -0.314 5.314 14 C 0.290 3.710 15 O -0.387 6.387 16 C 0.316 3.684 17 O -0.382 6.382 18 N -0.244 5.244 19 C -0.019 4.019 20 C -0.177 4.177 21 C -0.192 4.192 22 C -0.053 4.053 23 O -0.112 6.112 24 C -0.026 4.026 25 H 0.080 0.920 26 H 0.230 0.770 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.349 -15.210 8.931 18.166 hybrid contribution -0.114 1.272 0.526 1.381 sum -4.463 -13.938 9.457 17.425 Atomic orbital electron populations 1.69718 1.05990 1.27929 1.49521 1.25090 0.95043 0.99768 0.93336 0.86395 0.79759 0.82393 0.78310 1.20386 1.21033 1.19691 1.21465 0.93702 0.89945 1.52399 0.91407 1.19639 0.86610 0.91820 0.81165 1.86128 1.51524 1.57088 1.44190 1.22700 0.97614 0.95193 1.00357 1.22125 0.87378 0.95211 0.96468 1.48657 1.22179 1.10359 1.50176 1.19288 0.82941 0.87209 0.81580 1.90758 1.36904 1.64410 1.46636 1.20607 0.79448 0.90074 0.78309 1.90763 1.34909 1.65898 1.46599 1.49975 1.20497 1.03358 1.50546 1.22103 1.04711 0.77814 0.97251 1.21980 0.99023 1.01229 0.95514 1.22121 0.98902 0.95543 1.02614 1.23129 1.02513 0.95842 0.83788 1.90949 1.43325 1.53161 1.23754 1.23440 1.03124 0.75642 1.00374 0.91978 0.76954 0.90546 0.90414 0.91945 0.91298 0.90181 0.87370 0.89645 0.90991 0.90505 0.90189 0.86668 0.92136 0.89166 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.75 10.69 55.43 0.59 -23.16 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -13.97 8.27 -34.44 -0.28 -14.25 16 8 H 0.07 1.73 7.79 -52.48 -0.41 1.32 16 9 C 0.25 6.08 0.87 -89.62 -0.08 6.00 16 10 O -0.58 -14.98 13.16 -35.23 -0.46 -15.45 16 11 C -0.12 -2.49 6.13 -24.89 -0.15 -2.65 16 12 C 0.11 2.19 5.49 -3.06 -0.02 2.17 16 13 N -0.58 -12.73 3.33 -171.03 -0.57 -13.30 16 14 C 0.51 10.91 7.90 -11.58 -0.09 10.82 16 15 O -0.51 -12.02 15.31 -16.65 -0.25 -12.27 16 16 C 0.53 9.69 7.84 -11.58 -0.09 9.60 16 17 O -0.51 -9.32 13.57 5.50 0.07 -9.25 16 18 N -0.46 -7.06 3.61 -60.16 -0.22 -7.28 16 19 C 0.10 1.08 6.62 -3.56 -0.02 1.06 16 20 C -0.14 -1.10 6.14 -26.48 -0.16 -1.26 16 21 C -0.15 -1.18 6.06 -26.62 -0.16 -1.34 16 22 C 0.03 0.27 7.08 37.20 0.26 0.53 16 23 O -0.11 -1.70 9.55 -33.88 -0.32 -2.02 16 24 C 0.09 2.30 5.38 -2.53 -0.01 2.29 16 25 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 26 H 0.38 10.00 7.56 45.56 0.34 10.34 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 29 H 0.06 1.12 7.70 -51.93 -0.40 0.72 16 30 H 0.07 1.37 7.57 -51.93 -0.39 0.97 16 31 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.11 1.15 7.06 -51.93 -0.37 0.79 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 2.43 7.33 -51.93 -0.38 2.05 16 40 H 0.07 1.62 8.03 -51.93 -0.42 1.21 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -30.45 327.67 -7.11 -37.55 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.96 Total: 10.25 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: -0.91 Total: 14.72 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.19 Total: -43.74 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.97 Total: -38.99 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.45 -7.11 -37.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326529082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.347 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds