Wall clock time and date at job start Fri Apr 10 2020 17:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29399 * 125.58262 * 2 1 4 4 N 1.40167 * 108.14354 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.35278 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47360 * 270.00206 * 5 4 3 7 7 O 1.20824 * 119.99839 * 0.02562 * 6 5 4 8 8 O 1.34221 * 119.99857 * 180.02562 * 6 5 4 9 9 C 1.45207 * 116.99792 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46942 * 179.97438 * 9 8 6 11 11 O 1.21292 * 120.00365 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99993 * 180.02562 * 10 9 8 13 13 C 1.37098 * 120.00263 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99964 * 359.97438 * 13 12 10 15 15 C 1.38949 * 120.00214 * 180.02562 * 13 12 10 16 16 N 1.31412 * 119.99854 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00154 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47206 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47385 * 120.00046 * 17 15 13 20 20 H 1.48504 * 109.46877 * 239.99914 * 17 15 13 21 21 C 1.34944 * 107.29845 * 0.02562 * 4 3 2 22 22 O 1.21813 * 126.30587 * 179.97438 * 21 4 3 23 23 N 1.34820 * 107.38961 * 0.26122 * 21 4 3 24 24 C 1.46510 * 125.82785 * 179.70520 * 23 21 4 25 25 H 1.09001 * 109.47199 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46341 * 120.02204 * 1 2 3 27 27 H 1.08992 * 109.46964 * 240.02483 * 1 2 3 28 28 H 1.08995 * 109.47110 * 30.00597 * 5 4 3 29 29 H 1.09003 * 109.46734 * 150.00055 * 5 4 3 30 30 H 1.08991 * 109.46887 * 299.99628 * 9 8 6 31 31 H 1.08997 * 109.46981 * 60.00027 * 9 8 6 32 32 H 0.97006 * 120.00147 * 359.97438 * 12 10 9 33 33 H 0.97006 * 120.00238 * 179.97438 * 16 15 13 34 34 H 1.08993 * 109.46966 * 0.02715 * 24 23 21 35 35 H 1.09003 * 109.46486 * 120.02741 * 24 23 21 36 36 H 1.08996 * 109.47262 * 240.02264 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2600 1.0524 0.0000 4 7 3.5973 0.6323 0.0006 5 6 4.7793 1.4977 0.0003 6 6 5.1850 1.7935 -1.4206 7 8 4.5514 1.3295 -2.3388 8 8 6.2501 2.5725 -1.6661 9 6 6.5823 2.8153 -3.0587 10 6 7.7966 3.7042 -3.1378 11 8 8.3295 4.0950 -2.1207 12 7 8.2900 4.0657 -4.3387 13 6 9.3945 4.8748 -4.4108 14 1 9.8689 5.2228 -3.5051 15 6 9.9028 5.2479 -5.6489 16 7 9.3253 4.8249 -6.7509 17 14 11.4081 6.3497 -5.7470 18 1 11.8665 6.6848 -4.3750 19 1 12.4931 5.6420 -6.4729 20 1 11.0608 7.5988 -6.4713 21 6 3.5940 -0.7171 0.0004 22 8 4.5738 -1.4408 0.0003 23 7 2.3064 -1.1169 -0.0062 24 6 1.8396 -2.5056 -0.0149 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3632 -0.5142 -0.8899 27 1 -0.3633 -0.5134 0.8901 28 1 4.5467 2.4307 0.5135 29 1 5.5981 0.9945 0.5147 30 1 6.7931 1.8669 -3.5525 31 1 5.7423 3.3035 -3.5527 32 1 7.8637 3.7534 -5.1522 33 1 9.6799 5.0857 -7.6153 34 1 2.6980 -3.1774 -0.0148 35 1 1.2333 -2.6906 0.8718 36 1 1.2403 -2.6819 -0.9081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332985058.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:45:51 Heat of formation + Delta-G solvation = -95.241230 kcal Electronic energy + Delta-G solvation = -23309.913123 eV Core-core repulsion = 19410.060314 eV Total energy + Delta-G solvation = -3899.852809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.59330 -41.74409 -40.09607 -38.64649 -37.78638 -36.47698 -36.06860 -33.48651 -33.39789 -31.71854 -30.08628 -28.38111 -27.62908 -26.46016 -23.41028 -22.29112 -21.95785 -21.49575 -20.11982 -19.30002 -18.72590 -18.01132 -17.95970 -17.77571 -17.17408 -16.91216 -16.74612 -16.39973 -15.89469 -15.76163 -15.02185 -14.87293 -14.64278 -14.31421 -14.17367 -13.70443 -13.61248 -13.58727 -13.51411 -13.21526 -12.95942 -12.95742 -12.91781 -12.49092 -12.11855 -12.03052 -11.99204 -11.61277 -11.54050 -11.10751 -10.56252 -10.15018 -9.72778 -8.54933 -6.05895 0.40300 0.86594 0.89303 1.27073 1.32960 1.42016 1.54091 1.60705 1.82632 2.02459 2.28271 2.94321 3.10277 3.27405 3.49587 3.72779 3.95598 3.97236 4.06022 4.07397 4.15768 4.16072 4.47086 4.71235 4.74360 4.77076 4.82325 4.89367 5.07001 5.12313 5.34993 5.59068 5.85747 6.36571 6.47597 6.51015 6.79617 6.99728 7.35710 7.88707 8.62464 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.040615 B = 0.002495 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.238467 B =11219.274514 C =11275.821957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.293 3.707 3 N -0.309 5.309 4 N -0.451 5.451 5 C 0.175 3.825 6 C 0.444 3.556 7 O -0.530 6.530 8 O -0.334 6.334 9 C 0.072 3.928 10 C 0.438 3.562 11 O -0.615 6.615 12 N -0.557 5.557 13 C -0.337 4.337 14 H 0.086 0.914 15 C -0.010 4.010 16 N -0.916 5.916 17 Si 1.000 3.000 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.268 1.268 21 C 0.636 3.364 22 O -0.592 6.592 23 N -0.555 5.555 24 C 0.086 3.914 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.124 0.876 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.400 0.600 33 H 0.281 0.719 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.400 -12.387 12.709 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.016 3.984 3 N -0.132 5.132 4 N -0.270 5.270 5 C 0.052 3.948 6 C 0.286 3.714 7 O -0.419 6.419 8 O -0.249 6.249 9 C -0.005 4.005 10 C 0.224 3.776 11 O -0.501 6.501 12 N -0.195 5.195 13 C -0.466 4.466 14 H 0.104 0.896 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.823 3.177 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.193 1.193 21 C 0.335 3.665 22 O -0.469 6.469 23 N -0.282 5.282 24 C -0.053 4.053 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.142 0.858 28 H 0.191 0.809 29 H 0.172 0.828 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.134 0.866 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.406 -11.711 12.873 27.588 hybrid contribution 0.896 -0.466 -1.090 1.486 sum -20.511 -12.177 11.783 26.605 Atomic orbital electron populations 1.20792 0.78455 1.07202 1.06735 1.25339 0.98388 0.80582 0.94106 1.77069 0.86424 1.22466 1.27275 1.48426 1.04850 1.04766 1.68972 1.20979 0.85842 0.98772 0.89176 1.24808 0.77403 0.74846 0.94300 1.90652 1.53570 1.50099 1.47562 1.86525 1.45409 1.63050 1.29871 1.22534 0.97115 1.00687 0.80155 1.19993 0.87437 0.85960 0.84186 1.90527 1.63607 1.60399 1.35609 1.41751 1.27111 1.44178 1.06430 1.19780 1.05926 1.26584 0.94336 0.89629 1.26173 1.02038 0.99059 0.93803 1.69684 1.42123 1.45359 0.98468 0.84766 0.76816 0.77602 0.78512 1.19460 1.19462 1.19328 1.17026 0.84778 0.83362 0.81315 1.91051 1.36500 1.58879 1.60473 1.46072 1.05193 1.10330 1.66636 1.22236 1.01828 0.75132 1.06150 0.87540 0.86812 0.85817 0.80915 0.82790 0.88096 0.87498 0.76612 0.90920 0.90379 0.86609 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.10 71.24 0.72 0.50 16 2 C 0.29 4.63 7.98 137.70 1.10 5.73 16 3 N -0.31 -7.19 12.53 -49.60 -0.62 -7.81 16 4 N -0.45 -12.41 3.11 -481.77 -1.50 -13.91 16 5 C 0.18 4.45 6.98 85.63 0.60 5.04 16 6 C 0.44 15.08 8.03 71.24 0.57 15.65 16 7 O -0.53 -20.70 16.18 21.97 0.36 -20.34 16 8 O -0.33 -12.86 9.75 -44.97 -0.44 -13.30 16 9 C 0.07 2.89 5.94 71.24 0.42 3.31 16 10 C 0.44 22.01 7.86 87.66 0.69 22.70 16 11 O -0.61 -35.57 16.08 15.73 0.25 -35.32 16 12 N -0.56 -29.31 5.29 -306.99 -1.62 -30.94 16 13 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 14 H 0.09 5.16 7.16 -2.91 -0.02 5.14 16 15 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 16 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 17 Si 1.00 42.55 29.55 68.60 2.03 44.58 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 21 C 0.64 18.56 8.61 178.99 1.54 20.10 16 22 O -0.59 -21.50 17.48 -4.71 -0.08 -21.58 16 23 N -0.55 -10.49 3.14 -668.80 -2.10 -12.59 16 24 C 0.09 0.77 10.86 127.77 1.39 2.16 16 25 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 27 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.17 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.15 3.44 8.11 -2.39 -0.02 3.42 16 30 H 0.10 3.74 8.13 -2.39 -0.02 3.72 16 31 H 0.11 3.84 8.13 -2.39 -0.02 3.82 16 32 H 0.40 19.87 7.90 -92.70 -0.73 19.14 16 33 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 34 H 0.08 1.02 7.73 -2.39 -0.02 1.00 16 35 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -87.07 333.35 5.27 -81.81 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.40 Total: 21.82 kcal Atomic # 6 Polarization: 48.40 SS G_CDS: 8.31 Total: 56.71 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -5.56 Total: -114.38 kcal Atomic # 8 Polarization: -90.62 SS G_CDS: 0.09 Total: -90.53 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -87.07 5.27 -81.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332985058.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.433 kcal (2) G-P(sol) polarization free energy of solvation -87.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds