Wall clock time and date at job start Fri Apr 10 2020 17:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00066 * 2 1 4 4 H 1.48498 * 109.46988 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47167 * 119.99813 * 3 2 1 6 6 H 1.48501 * 109.47403 * 240.00086 * 3 2 1 7 7 C 1.37884 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99762 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.88366 * 353.89235 * 9 7 2 11 11 C 1.54319 * 109.88994 * 232.69363 * 9 7 2 12 12 C 1.55138 * 103.02189 * 218.31394 * 11 9 7 13 13 C 1.54901 * 101.65464 * 35.65089 * 12 11 9 14 14 N 1.47449 * 109.88896 * 114.92706 * 9 7 2 15 15 C 1.46898 * 110.99672 * 356.14317 * 14 9 7 16 16 C 1.50698 * 109.46707 * 189.14206 * 15 14 9 17 17 N 1.30364 * 125.48570 * 89.69839 * 16 15 14 18 18 C 1.34133 * 108.90155 * 179.83141 * 17 16 15 19 19 C 1.35772 * 107.51869 * 0.42520 * 18 17 16 20 20 C 1.47830 * 126.58277 * 179.72615 * 19 18 17 21 21 C 1.39574 * 120.14102 * 179.74819 * 20 19 18 22 22 C 1.37963 * 119.84509 * 179.71964 * 21 20 19 23 23 C 1.38353 * 120.14803 * 0.53142 * 22 21 20 24 24 C 1.38356 * 120.29629 * 359.76732 * 23 22 21 25 25 C 1.37959 * 120.14214 * 359.95335 * 24 23 22 26 26 O 1.34002 * 125.48019 * 269.99919 * 16 15 14 27 27 H 0.97003 * 119.99935 * 0.02562 * 1 2 3 28 28 H 1.09004 * 110.70676 * 336.69540 * 11 9 7 29 29 H 1.08993 * 110.71162 * 99.92713 * 11 9 7 30 30 H 1.09005 * 110.99009 * 277.55869 * 12 11 9 31 31 H 1.08999 * 111.02647 * 153.75915 * 12 11 9 32 32 H 1.09005 * 110.37608 * 204.10554 * 13 12 11 33 33 H 1.09000 * 110.46825 * 81.80714 * 13 12 11 34 34 H 1.09002 * 109.47386 * 309.14158 * 15 14 9 35 35 H 1.08996 * 109.47107 * 69.14262 * 15 14 9 36 36 H 1.08007 * 126.23870 * 180.16417 * 18 17 16 37 37 H 1.07990 * 120.07578 * 359.97342 * 21 20 19 38 38 H 1.08004 * 119.92052 * 180.27644 * 22 21 20 39 39 H 1.08004 * 119.85319 * 179.74312 * 23 22 21 40 40 H 1.07996 * 119.93217 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.07759 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.1830 -2.3105 0.1091 11 6 1.7498 -3.3933 1.1552 12 6 1.7392 -4.8122 0.5281 13 6 2.1598 -4.5121 -0.9322 14 7 1.5068 -3.2260 -1.2566 15 6 2.3391 -2.4275 -2.1663 16 6 2.3934 -3.0971 -3.5153 17 7 1.5598 -2.8915 -4.4963 18 6 1.9187 -3.6553 -5.5388 19 6 3.0162 -4.3634 -5.1680 20 6 3.7553 -5.3405 -5.9953 21 6 4.8760 -5.9916 -5.4775 22 6 5.5577 -6.9067 -6.2529 23 6 5.1393 -7.1712 -7.5448 24 6 4.0329 -6.5246 -8.0664 25 6 3.3388 -5.6116 -7.2997 26 8 3.3030 -4.0038 -3.8975 27 1 -0.4850 0.8401 -0.0004 28 1 2.7597 -3.1110 1.4527 29 1 1.0683 -3.3421 2.0043 30 1 0.7407 -5.2480 0.5651 31 1 2.4648 -5.4617 1.0178 32 1 1.8034 -5.2974 -1.5989 33 1 3.2432 -4.4165 -1.0048 34 1 1.9093 -1.4314 -2.2721 35 1 3.3473 -2.3469 -1.7599 36 1 1.4224 -3.7020 -6.4970 37 1 5.2062 -5.7827 -4.4707 38 1 6.4224 -7.4145 -5.8518 39 1 5.6790 -7.8854 -8.1491 40 1 3.7117 -6.7353 -9.0757 41 1 2.4750 -5.1078 -7.7077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048346069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:45 Heat of formation + Delta-G solvation = 53.671718 kcal Electronic energy + Delta-G solvation = -23418.793993 eV Core-core repulsion = 20072.080892 eV Total energy + Delta-G solvation = -3346.713102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.89357 -39.13926 -38.06776 -34.39752 -32.89129 -32.73314 -31.44599 -31.14353 -28.56286 -28.15539 -25.30230 -24.37052 -23.44507 -22.55647 -21.37509 -20.70689 -20.06844 -19.33296 -17.76308 -16.76085 -16.38318 -15.99051 -15.57595 -15.09114 -15.00447 -14.62978 -14.22009 -14.01134 -13.62896 -13.37282 -13.01876 -12.95484 -12.77180 -12.44458 -11.92737 -11.76247 -11.59931 -11.25675 -11.01090 -10.96323 -10.81119 -10.66978 -10.45575 -10.35178 -10.15123 -10.07585 -9.79367 -9.44213 -9.26467 -9.17862 -8.67809 -7.88670 -7.25162 -6.13446 -4.24622 0.65801 1.18720 2.11090 2.90556 3.09377 3.24195 3.30672 3.32000 3.70482 4.30605 4.45662 4.61153 4.74142 4.80709 4.94166 4.96385 5.18125 5.22237 5.34932 5.40089 5.58599 5.64414 5.71960 5.77518 5.90556 5.96418 6.04493 6.20871 6.23191 6.27812 6.32242 6.43987 6.49038 6.54773 6.59112 6.72142 6.76415 6.82770 6.93777 7.02507 7.63613 7.73497 7.80101 8.18846 8.29372 8.40661 8.90395 9.40040 10.89515 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.003678 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.024751 B = 7611.003656 C = 8260.587816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.187 3.813 10 H 0.089 0.911 11 C -0.130 4.130 12 C -0.131 4.131 13 C 0.040 3.960 14 N -0.523 5.523 15 C 0.168 3.832 16 C 0.233 3.767 17 N -0.477 5.477 18 C -0.011 4.011 19 C -0.042 4.042 20 C 0.005 3.995 21 C -0.106 4.106 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.115 4.115 25 C -0.104 4.104 26 O -0.200 6.200 27 H 0.267 0.733 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.034 0.966 34 H 0.132 0.868 35 H 0.057 0.943 36 H 0.180 0.820 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.330 -12.084 -11.662 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.074 0.926 9 C 0.083 3.917 10 H 0.107 0.893 11 C -0.170 4.170 12 C -0.169 4.169 13 C -0.089 4.089 14 N -0.249 5.249 15 C 0.039 3.961 16 C 0.027 3.973 17 N -0.205 5.205 18 C -0.152 4.152 19 C -0.096 4.096 20 C 0.004 3.996 21 C -0.124 4.124 22 C -0.134 4.134 23 C -0.140 4.140 24 C -0.133 4.133 25 C -0.122 4.122 26 O -0.088 6.088 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.197 0.803 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.191 -11.621 -11.821 18.069 hybrid contribution 1.776 0.533 0.285 1.876 sum 8.966 -11.088 -11.536 18.342 Atomic orbital electron populations 1.69877 1.06028 1.27351 1.47654 1.25013 0.94807 0.99346 0.93649 0.86712 0.79819 0.83028 0.78900 1.20999 1.20057 1.19863 1.21289 0.92958 0.90838 1.53280 0.92589 1.20278 1.00027 0.89817 0.81577 0.89300 1.22947 1.00770 0.93483 0.99751 1.22674 1.00475 0.98212 0.95576 1.22989 0.96293 0.93724 0.95861 1.64066 1.41297 1.03220 1.16333 1.20668 0.98117 0.96694 0.80600 1.27522 0.83187 0.87842 0.98746 1.70476 1.25976 1.24225 0.99847 1.23348 0.95799 0.96399 0.99658 1.21240 1.00444 1.03434 0.84442 1.17664 0.94843 0.94703 0.92394 1.21313 0.94614 0.96170 1.00345 1.21092 0.99958 0.97938 0.94374 1.21241 0.97102 0.99969 0.95713 1.21028 0.95766 0.96639 0.99863 1.21055 1.00263 0.98503 0.92375 1.84466 1.49264 1.48347 1.26696 0.92299 0.92589 0.92504 0.91742 0.92620 0.92676 0.94784 0.84992 0.92512 0.80334 0.85465 0.85669 0.85895 0.85479 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.25 12.63 55.43 0.70 -23.55 16 2 C 0.08 2.05 5.38 -17.82 -0.10 1.95 16 3 Si 0.89 20.26 29.54 -169.99 -5.02 15.23 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.87 5.52 -34.44 -0.19 -14.06 16 8 H 0.06 1.41 7.27 -52.48 -0.38 1.03 16 9 C 0.19 4.51 3.71 -67.88 -0.25 4.26 16 10 H 0.09 2.45 6.97 -51.93 -0.36 2.09 16 11 C -0.13 -2.70 6.46 -24.91 -0.16 -2.86 16 12 C -0.13 -2.36 7.08 -24.60 -0.17 -2.54 16 13 C 0.04 0.77 6.15 -2.30 -0.01 0.76 16 14 N -0.52 -11.74 5.16 -226.16 -1.17 -12.90 16 15 C 0.17 3.65 4.33 -4.98 -0.02 3.63 16 16 C 0.23 4.75 7.28 -12.90 -0.09 4.66 16 17 N -0.48 -9.79 11.27 -10.82 -0.12 -9.91 16 18 C -0.01 -0.19 11.29 -17.43 -0.20 -0.39 16 19 C -0.04 -0.69 7.07 -36.54 -0.26 -0.95 16 20 C 0.00 0.06 5.87 -104.97 -0.62 -0.56 16 21 C -0.11 -1.30 9.73 -39.18 -0.38 -1.68 16 22 C -0.12 -1.13 10.03 -39.64 -0.40 -1.52 16 23 C -0.12 -1.06 10.04 -39.50 -0.40 -1.46 16 24 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 25 C -0.10 -1.11 9.58 -39.18 -0.38 -1.49 16 26 O -0.20 -3.72 10.59 4.23 0.04 -3.68 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.64 7.64 -51.93 -0.40 0.25 16 34 H 0.13 3.20 6.94 -51.93 -0.36 2.84 16 35 H 0.06 1.20 7.15 -51.93 -0.37 0.82 16 36 H 0.18 2.28 7.30 -52.48 -0.38 1.90 16 37 H 0.13 1.56 7.95 -52.49 -0.42 1.14 16 38 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 1.15 7.04 -52.49 -0.37 0.78 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -28.97 341.19 -9.99 -38.96 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.54 Total: 4.37 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -4.02 Total: -13.67 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.59 Total: -46.37 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.97 -9.99 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048346069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.634 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds