Wall clock time and date at job start Fri Apr 10 2020 17:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00066 * 2 1 4 4 H 1.48498 * 109.46988 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47167 * 119.99813 * 3 2 1 6 6 H 1.48501 * 109.47403 * 240.00086 * 3 2 1 7 7 C 1.37884 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99871 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99762 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.88366 * 353.89235 * 9 7 2 11 11 C 1.54319 * 109.88994 * 232.69363 * 9 7 2 12 12 C 1.55138 * 103.02189 * 218.31394 * 11 9 7 13 13 C 1.54901 * 101.65464 * 35.65089 * 12 11 9 14 14 N 1.47449 * 109.88896 * 114.92706 * 9 7 2 15 15 C 1.46898 * 110.99672 * 356.14317 * 14 9 7 16 16 C 1.50698 * 109.46707 * 189.14206 * 15 14 9 17 17 N 1.30364 * 125.48570 * 89.69839 * 16 15 14 18 18 C 1.34133 * 108.90155 * 179.83141 * 17 16 15 19 19 C 1.35772 * 107.51869 * 0.42520 * 18 17 16 20 20 C 1.47830 * 126.58277 * 179.72615 * 19 18 17 21 21 C 1.39574 * 120.14102 * 179.74819 * 20 19 18 22 22 C 1.37963 * 119.84509 * 179.71964 * 21 20 19 23 23 C 1.38353 * 120.14803 * 0.53142 * 22 21 20 24 24 C 1.38356 * 120.29629 * 359.76732 * 23 22 21 25 25 C 1.37959 * 120.14214 * 359.95335 * 24 23 22 26 26 O 1.34002 * 125.48019 * 269.99919 * 16 15 14 27 27 H 0.97003 * 119.99935 * 0.02562 * 1 2 3 28 28 H 1.09004 * 110.70676 * 336.69540 * 11 9 7 29 29 H 1.08993 * 110.71162 * 99.92713 * 11 9 7 30 30 H 1.09005 * 110.99009 * 277.55869 * 12 11 9 31 31 H 1.08999 * 111.02647 * 153.75915 * 12 11 9 32 32 H 1.09005 * 110.37608 * 204.10554 * 13 12 11 33 33 H 1.09000 * 110.46825 * 81.80714 * 13 12 11 34 34 H 1.09002 * 109.47386 * 309.14158 * 15 14 9 35 35 H 1.08996 * 109.47107 * 69.14262 * 15 14 9 36 36 H 1.08007 * 126.23870 * 180.16417 * 18 17 16 37 37 H 1.07990 * 120.07578 * 359.97342 * 21 20 19 38 38 H 1.08004 * 119.92052 * 180.27644 * 22 21 20 39 39 H 1.08004 * 119.85319 * 179.74312 * 23 22 21 40 40 H 1.07996 * 119.93217 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.07759 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.1830 -2.3105 0.1091 11 6 1.7498 -3.3933 1.1552 12 6 1.7392 -4.8122 0.5281 13 6 2.1598 -4.5121 -0.9322 14 7 1.5068 -3.2260 -1.2566 15 6 2.3391 -2.4275 -2.1663 16 6 2.3934 -3.0971 -3.5153 17 7 1.5598 -2.8915 -4.4963 18 6 1.9187 -3.6553 -5.5388 19 6 3.0162 -4.3634 -5.1680 20 6 3.7553 -5.3405 -5.9953 21 6 4.8760 -5.9916 -5.4775 22 6 5.5577 -6.9067 -6.2529 23 6 5.1393 -7.1712 -7.5448 24 6 4.0329 -6.5246 -8.0664 25 6 3.3388 -5.6116 -7.2997 26 8 3.3030 -4.0038 -3.8975 27 1 -0.4850 0.8401 -0.0004 28 1 2.7597 -3.1110 1.4527 29 1 1.0683 -3.3421 2.0043 30 1 0.7407 -5.2480 0.5651 31 1 2.4648 -5.4617 1.0178 32 1 1.8034 -5.2974 -1.5989 33 1 3.2432 -4.4165 -1.0048 34 1 1.9093 -1.4314 -2.2721 35 1 3.3473 -2.3469 -1.7599 36 1 1.4224 -3.7020 -6.4970 37 1 5.2062 -5.7827 -4.4707 38 1 6.4224 -7.4145 -5.8518 39 1 5.6790 -7.8854 -8.1491 40 1 3.7117 -6.7353 -9.0757 41 1 2.4750 -5.1078 -7.7077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048346069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:45 Heat of formation + Delta-G solvation = 35.012817 kcal Electronic energy + Delta-G solvation = -23419.603104 eV Core-core repulsion = 20072.080892 eV Total energy + Delta-G solvation = -3347.522212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.30562 -39.99542 -39.74667 -35.84290 -34.71163 -34.14771 -32.77737 -31.92003 -30.30389 -29.55307 -26.77430 -26.29297 -24.50537 -23.59259 -22.59235 -21.97435 -21.64431 -21.15054 -18.99161 -18.37388 -17.87155 -17.14705 -16.84699 -16.69440 -16.35270 -15.99416 -15.77029 -15.11930 -14.87382 -14.48500 -14.31592 -14.24104 -14.11759 -13.89481 -13.75917 -13.32734 -12.83166 -12.62178 -12.51620 -12.39903 -12.38297 -12.18280 -12.02990 -11.96563 -11.86278 -11.51125 -11.26987 -11.12199 -10.84179 -10.65073 -9.94712 -9.13161 -8.96210 -8.13234 -6.29845 -0.37170 0.42115 0.91398 1.41090 1.42355 1.49610 1.54492 1.72447 2.38838 2.86909 3.02399 3.06392 3.56160 3.65862 3.92838 3.94786 3.99979 4.02939 4.13247 4.25918 4.33119 4.41162 4.47374 4.56750 4.62086 4.65693 4.85011 4.87310 4.92813 4.96330 5.02048 5.09142 5.12623 5.24905 5.31196 5.33956 5.47504 5.52531 5.54060 5.58569 5.80618 5.93403 5.97797 6.49465 6.50999 6.76898 6.91790 7.36824 8.89167 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.003678 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.024751 B = 7611.003656 C = 8260.587816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.030 3.970 3 Si 0.947 3.053 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.184 3.816 10 H 0.046 0.954 11 C -0.126 4.126 12 C -0.118 4.118 13 C 0.043 3.957 14 N -0.540 5.540 15 C 0.183 3.817 16 C 0.206 3.794 17 N -0.502 5.502 18 C -0.031 4.031 19 C -0.024 4.024 20 C -0.033 4.033 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.103 4.103 26 O -0.206 6.206 27 H 0.265 0.735 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.214 0.786 37 H 0.116 0.884 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.160 0.840 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 -14.448 -13.698 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.210 1.210 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.075 0.925 9 C 0.079 3.921 10 H 0.064 0.936 11 C -0.165 4.165 12 C -0.155 4.155 13 C -0.084 4.084 14 N -0.266 5.266 15 C 0.054 3.946 16 C 0.000 4.000 17 N -0.232 5.232 18 C -0.171 4.171 19 C -0.077 4.077 20 C -0.033 4.033 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.121 4.121 26 O -0.093 6.093 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.230 0.770 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.238 -14.004 -13.856 21.759 hybrid contribution 1.239 1.059 0.709 1.777 sum 10.477 -12.945 -13.147 21.217 Atomic orbital electron populations 1.70018 1.07506 1.27819 1.49694 1.25718 0.95418 1.02482 0.93625 0.85777 0.78612 0.79270 0.79116 1.21047 1.19134 1.19505 1.21504 0.92968 0.91686 1.52127 0.92524 1.20109 0.97583 0.90676 0.83771 0.93553 1.22810 1.00544 0.94659 0.98517 1.22640 1.01822 0.96908 0.94176 1.22997 0.96390 0.92103 0.96959 1.63848 1.42720 1.04264 1.15760 1.20206 0.97414 0.95406 0.81561 1.26906 0.84728 0.89862 0.98493 1.70393 1.26545 1.25229 1.00996 1.23839 0.96628 0.96448 1.00201 1.21961 0.99902 1.02527 0.83342 1.17830 0.96178 0.95851 0.93474 1.21398 0.94919 0.97172 1.00459 1.21397 1.00350 0.97204 0.94795 1.21729 0.96490 0.99277 0.95248 1.21463 0.95260 0.95390 1.01027 1.21347 1.00783 0.98666 0.91300 1.84428 1.48832 1.47993 1.28039 0.92562 0.92426 0.92356 0.91249 0.89199 0.92287 0.94243 0.88388 0.92512 0.76964 0.86622 0.83387 0.82504 0.82198 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.09 12.63 21.45 0.27 -52.81 16 2 C 0.03 1.60 5.38 84.66 0.46 2.06 16 3 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 4 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -28.66 5.52 25.60 0.14 -28.52 16 8 H 0.06 2.91 7.27 -2.91 -0.02 2.89 16 9 C 0.18 9.20 3.71 44.51 0.16 9.37 16 10 H 0.05 2.71 6.97 -2.39 -0.02 2.69 16 11 C -0.13 -5.23 6.46 31.77 0.21 -5.03 16 12 C -0.12 -4.07 7.08 31.98 0.23 -3.84 16 13 C 0.04 1.67 6.15 86.77 0.53 2.21 16 14 N -0.54 -25.07 5.16 -869.44 -4.49 -29.56 16 15 C 0.18 8.36 4.33 85.56 0.37 8.73 16 16 C 0.21 8.73 7.28 88.33 0.64 9.37 16 17 N -0.50 -21.26 11.27 -302.86 -3.41 -24.67 16 18 C -0.03 -1.05 11.29 83.77 0.95 -0.10 16 19 C -0.02 -0.79 7.07 24.24 0.17 -0.62 16 20 C -0.03 -0.83 5.87 -20.09 -0.12 -0.95 16 21 C -0.12 -2.80 9.73 22.53 0.22 -2.58 16 22 C -0.12 -1.96 10.03 22.23 0.22 -1.74 16 23 C -0.11 -1.40 10.04 22.33 0.22 -1.18 16 24 C -0.11 -1.53 10.03 22.23 0.22 -1.31 16 25 C -0.10 -1.93 9.58 22.53 0.22 -1.71 16 26 O -0.21 -7.83 10.59 -7.78 -0.08 -7.91 16 27 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 28 H 0.06 2.35 7.84 -2.38 -0.02 2.33 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.04 1.47 7.64 -2.39 -0.02 1.45 16 34 H 0.10 5.09 6.94 -2.39 -0.02 5.07 16 35 H 0.06 2.50 7.15 -2.39 -0.02 2.49 16 36 H 0.21 5.16 7.30 -2.91 -0.02 5.14 16 37 H 0.12 2.83 7.95 -2.92 -0.02 2.81 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.14 2.14 7.04 -2.91 -0.02 2.12 16 Total: -1.00 -66.32 341.19 0.19 -66.13 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.03 Total: 19.93 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: 4.84 Total: -15.84 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -7.63 Total: -107.04 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.08 Total: -7.91 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -66.32 0.19 -66.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048346069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.145 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds