Wall clock time and date at job start Fri Apr 10 2020 17:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00245 * 2 1 4 4 C 1.46905 * 110.99935 * 123.95154 * 2 1 3 5 5 C 1.53003 * 109.47084 * 66.04991 * 4 2 1 6 6 N 1.46494 * 109.46949 * 179.97438 * 5 4 2 7 7 C 1.35814 * 126.05082 * 124.99914 * 6 5 4 8 8 C 1.35755 * 107.56144 * 180.02562 * 7 6 5 9 9 N 1.40765 * 126.08137 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99854 * 179.97438 * 9 8 7 11 11 O 1.21303 * 120.00450 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72930 * 10 9 8 13 13 S 1.80997 * 109.47151 * 180.27780 * 12 10 9 14 14 C 1.76202 * 100.00066 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00172 * 0.02562 * 14 13 12 16 16 C 1.38802 * 119.99989 * 179.97438 * 14 13 12 17 17 N 1.31628 * 119.99948 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99883 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.46782 * 90.00226 * 18 16 14 20 20 H 1.48503 * 109.46800 * 209.99910 * 18 16 14 21 21 H 1.48496 * 109.47259 * 329.99920 * 18 16 14 22 22 C 1.40256 * 107.84136 * 0.24533 * 8 7 6 23 23 N 1.30835 * 108.33208 * 359.58580 * 22 8 7 24 24 H 1.08998 * 109.47332 * 296.04964 * 1 2 3 25 25 H 1.09000 * 109.47259 * 56.04898 * 1 2 3 26 26 H 1.09001 * 109.47632 * 176.04898 * 1 2 3 27 27 H 1.08998 * 109.47709 * 183.95510 * 3 2 1 28 28 H 1.09005 * 109.46702 * 303.95709 * 3 2 1 29 29 H 1.09006 * 109.47115 * 63.94723 * 3 2 1 30 30 H 1.08996 * 109.47202 * 306.04631 * 4 2 1 31 31 H 1.08998 * 109.46702 * 186.04482 * 4 2 1 32 32 H 1.09000 * 109.47117 * 59.99330 * 5 4 2 33 33 H 1.09000 * 109.46677 * 299.99812 * 5 4 2 34 34 H 1.07992 * 126.22132 * 0.06522 * 7 6 5 35 35 H 0.97001 * 119.99661 * 0.02562 * 9 8 7 36 36 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 37 37 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 38 38 H 0.97003 * 119.99714 * 180.02562 * 17 16 14 39 39 H 1.07995 * 125.83761 * 179.76181 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9704 6 7 2.1570 -3.0065 2.1046 7 6 1.4377 -3.8136 2.9266 8 6 2.2939 -4.3315 3.8441 9 7 1.9576 -5.2191 4.8836 10 6 2.9107 -5.6590 5.7288 11 8 4.0583 -5.2897 5.5941 12 6 2.5496 -6.6045 6.8454 13 16 4.0331 -7.0017 7.8032 14 6 3.3398 -8.0883 9.0046 15 1 2.2842 -8.3149 8.9824 16 6 4.1507 -8.6538 9.9789 17 7 3.6329 -9.4660 10.8760 18 14 5.9769 -8.2623 10.0168 19 1 6.2095 -7.0686 10.8688 20 1 6.7200 -9.4209 10.5745 21 1 6.4528 -7.9866 8.6375 22 6 3.5720 -3.8200 3.5759 23 7 3.4901 -3.0334 2.5336 24 1 -0.3634 0.4513 0.9232 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0708 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.5610 -0.3872 2.0628 31 1 3.0796 -0.6611 1.1756 32 1 2.0657 -2.6213 0.0452 33 1 0.5472 -2.3475 0.9324 34 1 0.3775 -4.0086 2.8618 35 1 1.0400 -5.5147 4.9910 36 1 1.8123 -6.1338 7.4959 37 1 2.1322 -7.5198 6.4258 38 1 4.1996 -9.8609 11.5571 39 1 4.4708 -4.0402 4.1327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061646831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:49 Heat of formation + Delta-G solvation = 56.786701 kcal Electronic energy + Delta-G solvation = -20620.532350 eV Core-core repulsion = 17305.857932 eV Total energy + Delta-G solvation = -3314.674418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37731 -39.19475 -38.08066 -34.72987 -33.28239 -32.45216 -30.31240 -29.66830 -28.14355 -27.64389 -25.63131 -24.76205 -22.25296 -21.57921 -21.17440 -19.82385 -17.87633 -17.56401 -16.43318 -16.38196 -16.14278 -15.54607 -15.24434 -15.10616 -14.97113 -14.65070 -14.09524 -13.77922 -13.67261 -13.49365 -12.94965 -12.86880 -12.77989 -12.61632 -12.29740 -12.22190 -12.03817 -11.60063 -11.28073 -11.01798 -10.76441 -10.65150 -10.64837 -9.87494 -9.54507 -9.46320 -9.01503 -8.95511 -8.53047 -7.73087 -6.93708 -6.30192 -4.02396 1.67712 2.17744 2.55056 2.75410 3.24988 3.29888 3.33862 3.47985 3.50138 3.62424 4.18698 4.32073 4.49445 4.58594 4.64877 4.71887 4.81389 4.84061 4.95837 5.04763 5.08876 5.08953 5.23312 5.30816 5.35182 5.41331 5.43582 5.61699 5.64983 5.70594 5.95330 6.22895 6.37980 6.42292 6.82173 6.94103 7.45819 7.68260 7.92710 8.38839 8.40349 9.15826 10.78914 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.048962 B = 0.002305 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.738189 B =12142.265642 C =12477.406537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.042 3.958 5 C 0.147 3.853 6 N -0.376 5.376 7 C 0.007 3.993 8 C 0.015 3.985 9 N -0.650 5.650 10 C 0.533 3.467 11 O -0.507 6.507 12 C -0.122 4.122 13 S -0.137 6.137 14 C -0.523 4.523 15 H 0.089 0.911 16 C 0.096 3.904 17 N -0.880 5.880 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 C 0.053 3.947 23 N -0.285 5.285 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.174 0.826 35 H 0.409 0.591 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.271 0.729 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.608 17.321 -21.495 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.025 3.975 6 N -0.162 5.162 7 C -0.140 4.140 8 C -0.090 4.090 9 N -0.297 5.297 10 C 0.320 3.680 11 O -0.380 6.380 12 C -0.273 4.273 13 S 0.089 5.911 14 C -0.670 4.670 15 H 0.107 0.893 16 C -0.113 4.113 17 N -0.516 5.516 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 C -0.134 4.134 23 N -0.106 5.106 24 H 0.047 0.953 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.191 0.809 35 H 0.244 0.756 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.936 18.384 -22.848 30.135 hybrid contribution -2.018 -0.775 1.830 2.832 sum -8.954 17.609 -21.019 28.845 Atomic orbital electron populations 1.22514 0.87284 1.02456 1.00952 1.61906 1.08093 1.14467 1.42523 1.22388 1.01153 0.88016 1.00714 1.22387 1.02164 0.92304 0.91774 1.21535 0.98835 0.90466 0.86660 1.48241 1.05827 1.37014 1.25146 1.21812 0.98007 0.99391 0.94744 1.17808 0.94170 1.01776 0.95208 1.42922 1.12275 1.45789 1.28704 1.20369 0.84829 0.80850 0.81944 1.90580 1.19629 1.56328 1.71499 1.23248 1.05358 1.00700 0.97993 1.84811 1.09893 1.61364 1.35029 1.22311 0.98875 1.31201 1.14636 0.89325 1.24715 0.99123 0.93517 0.93964 1.69937 1.36527 1.29470 1.15668 0.86736 0.84812 0.78871 0.81446 1.19193 1.19936 1.15860 1.24617 0.98813 0.95145 0.94832 1.77362 0.95797 1.22660 1.14823 0.95322 0.90977 0.91132 0.90956 0.91008 0.95409 0.94085 0.89000 0.88966 0.88893 0.80864 0.75576 0.88186 0.88133 0.91920 0.77558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.32 60.06 0.56 0.64 16 2 N -0.55 -3.71 5.02 -251.26 -1.26 -4.97 16 3 C 0.03 0.15 9.57 60.07 0.57 0.72 16 4 C 0.04 0.34 5.14 -3.82 -0.02 0.32 16 5 C 0.15 1.12 6.44 -4.04 -0.03 1.09 16 6 N -0.38 -4.14 3.70 -61.03 -0.23 -4.37 16 7 C 0.01 0.08 11.52 -16.68 -0.19 -0.12 16 8 C 0.02 0.20 6.90 -83.88 -0.58 -0.37 16 9 N -0.65 -8.40 5.47 -10.03 -0.05 -8.46 16 10 C 0.53 9.14 7.82 -10.98 -0.09 9.05 16 11 O -0.51 -10.33 13.02 5.54 0.07 -10.26 16 12 C -0.12 -2.25 6.16 36.01 0.22 -2.03 16 13 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 14 C -0.52 -14.80 10.04 30.94 0.31 -14.49 16 15 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 16 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 17 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 18 Si 0.86 21.57 27.74 -169.99 -4.72 16.85 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.23 -5.88 6.74 56.52 0.38 -5.50 16 22 C 0.05 0.82 10.84 -17.22 -0.19 0.63 16 23 N -0.28 -4.07 12.41 30.70 0.38 -3.69 16 24 H 0.03 0.15 8.14 -51.93 -0.42 -0.28 16 25 H 0.07 0.30 8.12 -51.93 -0.42 -0.12 16 26 H 0.07 0.28 6.47 -51.93 -0.34 -0.05 16 27 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.47 6.49 -51.93 -0.34 0.14 16 34 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.41 3.75 8.83 -40.82 -0.36 3.39 16 36 H 0.10 1.69 8.14 -51.91 -0.42 1.27 16 37 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.21 3.50 5.92 -52.49 -0.31 3.19 16 LS Contribution 343.43 15.07 5.18 5.18 Total: -1.00 -34.41 343.43 -6.93 -41.34 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.56 Total: 1.16 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 0.48 Total: -1.88 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.39 Total: -47.00 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.07 Total: -10.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.85 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.41 -6.93 -41.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061646831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.126 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds