Wall clock time and date at job start Fri Apr 10 2020 17:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46901 * 111.00245 * 2 1 4 4 C 1.46905 * 110.99935 * 123.95154 * 2 1 3 5 5 C 1.53003 * 109.47084 * 66.04991 * 4 2 1 6 6 N 1.46494 * 109.46949 * 179.97438 * 5 4 2 7 7 C 1.35814 * 126.05082 * 124.99914 * 6 5 4 8 8 C 1.35755 * 107.56144 * 180.02562 * 7 6 5 9 9 N 1.40765 * 126.08137 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99854 * 179.97438 * 9 8 7 11 11 O 1.21303 * 120.00450 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72930 * 10 9 8 13 13 S 1.80997 * 109.47151 * 180.27780 * 12 10 9 14 14 C 1.76202 * 100.00066 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00172 * 0.02562 * 14 13 12 16 16 C 1.38802 * 119.99989 * 179.97438 * 14 13 12 17 17 N 1.31628 * 119.99948 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99883 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.46782 * 90.00226 * 18 16 14 20 20 H 1.48503 * 109.46800 * 209.99910 * 18 16 14 21 21 H 1.48496 * 109.47259 * 329.99920 * 18 16 14 22 22 C 1.40256 * 107.84136 * 0.24533 * 8 7 6 23 23 N 1.30835 * 108.33208 * 359.58580 * 22 8 7 24 24 H 1.08998 * 109.47332 * 296.04964 * 1 2 3 25 25 H 1.09000 * 109.47259 * 56.04898 * 1 2 3 26 26 H 1.09001 * 109.47632 * 176.04898 * 1 2 3 27 27 H 1.08998 * 109.47709 * 183.95510 * 3 2 1 28 28 H 1.09005 * 109.46702 * 303.95709 * 3 2 1 29 29 H 1.09006 * 109.47115 * 63.94723 * 3 2 1 30 30 H 1.08996 * 109.47202 * 306.04631 * 4 2 1 31 31 H 1.08998 * 109.46702 * 186.04482 * 4 2 1 32 32 H 1.09000 * 109.47117 * 59.99330 * 5 4 2 33 33 H 1.09000 * 109.46677 * 299.99812 * 5 4 2 34 34 H 1.07992 * 126.22132 * 0.06522 * 7 6 5 35 35 H 0.97001 * 119.99661 * 0.02562 * 9 8 7 36 36 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 37 37 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 38 38 H 0.97003 * 119.99714 * 180.02562 * 17 16 14 39 39 H 1.07995 * 125.83761 * 179.76181 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.6314 -2.2426 0.9704 6 7 2.1570 -3.0065 2.1046 7 6 1.4377 -3.8136 2.9266 8 6 2.2939 -4.3315 3.8441 9 7 1.9576 -5.2191 4.8836 10 6 2.9107 -5.6590 5.7288 11 8 4.0583 -5.2897 5.5941 12 6 2.5496 -6.6045 6.8454 13 16 4.0331 -7.0017 7.8032 14 6 3.3398 -8.0883 9.0046 15 1 2.2842 -8.3149 8.9824 16 6 4.1507 -8.6538 9.9789 17 7 3.6329 -9.4660 10.8760 18 14 5.9769 -8.2623 10.0168 19 1 6.2095 -7.0686 10.8688 20 1 6.7200 -9.4209 10.5745 21 1 6.4528 -7.9866 8.6375 22 6 3.5720 -3.8200 3.5759 23 7 3.4901 -3.0334 2.5336 24 1 -0.3634 0.4513 0.9232 25 1 -0.3634 0.5739 -0.8525 26 1 -0.3634 -1.0252 -0.0708 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8525 29 1 1.7043 1.8724 0.9233 30 1 1.5610 -0.3872 2.0628 31 1 3.0796 -0.6611 1.1756 32 1 2.0657 -2.6213 0.0452 33 1 0.5472 -2.3475 0.9324 34 1 0.3775 -4.0086 2.8618 35 1 1.0400 -5.5147 4.9910 36 1 1.8123 -6.1338 7.4959 37 1 2.1322 -7.5198 6.4258 38 1 4.1996 -9.8609 11.5571 39 1 4.4708 -4.0402 4.1327 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061646831.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:46:49 Heat of formation + Delta-G solvation = 30.444346 kcal Electronic energy + Delta-G solvation = -20621.674641 eV Core-core repulsion = 17305.857932 eV Total energy + Delta-G solvation = -3315.816708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.36345 -40.44151 -38.63918 -35.86360 -34.65140 -34.13843 -31.55173 -30.61967 -28.73508 -28.46722 -27.80796 -25.45194 -23.23657 -22.43895 -22.01548 -20.95651 -19.79242 -18.54592 -17.73792 -17.26976 -17.05605 -16.88101 -16.53984 -16.14059 -15.82916 -15.75964 -15.38569 -15.01592 -14.80091 -14.67517 -14.40562 -13.83580 -13.80531 -13.37701 -13.32321 -13.05694 -12.99116 -12.70220 -12.63664 -12.58574 -12.24941 -11.85929 -11.78087 -11.62996 -11.15341 -10.93617 -10.50817 -10.40485 -9.45866 -8.99006 -8.72059 -8.49815 -6.19921 0.75348 0.97544 1.32227 1.33001 1.36986 1.50298 1.61591 2.10077 2.23340 2.27709 2.73547 2.88641 2.94639 3.56740 3.77135 3.91444 3.98999 4.09550 4.19102 4.26672 4.30697 4.39467 4.48632 4.49603 4.60347 4.64520 4.67350 4.81800 4.85979 4.97851 5.04444 5.14372 5.72727 5.74156 5.87806 5.96511 6.09186 6.13956 6.43074 6.66494 6.95721 7.19555 8.62312 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.048962 B = 0.002305 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.738189 B =12142.265642 C =12477.406537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.553 5.553 3 C 0.024 3.976 4 C 0.050 3.950 5 C 0.143 3.857 6 N -0.368 5.368 7 C 0.046 3.954 8 C -0.020 4.020 9 N -0.624 5.624 10 C 0.534 3.466 11 O -0.547 6.547 12 C -0.106 4.106 13 S -0.174 6.174 14 C -0.527 4.527 15 H 0.065 0.935 16 C 0.045 3.955 17 N -0.916 5.916 18 Si 0.913 3.087 19 H -0.263 1.263 20 H -0.261 1.261 21 H -0.236 1.236 22 C 0.029 3.971 23 N -0.312 5.312 24 H 0.027 0.973 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.227 0.773 35 H 0.430 0.570 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.276 0.724 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.735 18.277 -23.509 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.277 5.277 3 C -0.124 4.124 4 C -0.079 4.079 5 C 0.022 3.978 6 N -0.154 5.154 7 C -0.103 4.103 8 C -0.124 4.124 9 N -0.272 5.272 10 C 0.320 3.680 11 O -0.424 6.424 12 C -0.257 4.257 13 S 0.052 5.948 14 C -0.675 4.675 15 H 0.083 0.917 16 C -0.160 4.160 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.185 1.185 21 H -0.160 1.160 22 C -0.157 4.157 23 N -0.135 5.135 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.244 0.756 35 H 0.269 0.731 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -9.106 19.358 -24.898 32.827 hybrid contribution -1.546 -0.940 2.253 2.890 sum -10.653 18.418 -22.645 31.073 Atomic orbital electron populations 1.22609 0.85855 1.03600 1.01336 1.61941 1.09410 1.14713 1.41678 1.22427 1.00934 0.87867 1.01216 1.22214 1.00769 0.92887 0.92007 1.21857 1.00842 0.89611 0.85444 1.48626 1.04900 1.36473 1.25353 1.22547 0.99556 0.96202 0.91966 1.17932 0.94143 1.03556 0.96761 1.42478 1.12401 1.44788 1.27500 1.20054 0.84923 0.80758 0.82224 1.90595 1.21371 1.57853 1.72590 1.23198 1.02221 1.02263 0.98021 1.84769 1.14251 1.60537 1.35213 1.22470 0.97987 1.31508 1.15525 0.91660 1.25545 1.03139 0.93526 0.93809 1.70014 1.38185 1.30676 1.16577 0.85887 0.80170 0.79107 0.81344 1.18805 1.18514 1.16023 1.24348 0.99264 0.96520 0.95611 1.77320 0.98021 1.23173 1.15030 0.95398 0.90083 0.89683 0.91585 0.89647 0.95602 0.94843 0.91357 0.88731 0.85116 0.75650 0.73112 0.86284 0.86248 0.91430 0.80231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.32 127.69 1.19 1.28 16 2 N -0.55 -6.38 5.02 -948.84 -4.76 -11.14 16 3 C 0.02 0.25 9.57 127.69 1.22 1.47 16 4 C 0.05 0.71 5.14 86.30 0.44 1.16 16 5 C 0.14 1.71 6.44 86.38 0.56 2.27 16 6 N -0.37 -7.12 3.70 -347.00 -1.29 -8.40 16 7 C 0.05 0.75 11.52 83.50 0.96 1.71 16 8 C -0.02 -0.48 6.90 37.62 0.26 -0.22 16 9 N -0.62 -14.65 5.47 -304.04 -1.66 -16.32 16 10 C 0.53 17.79 7.82 87.66 0.69 18.48 16 11 O -0.55 -22.66 13.02 -3.10 -0.04 -22.70 16 12 C -0.11 -3.78 6.16 71.24 0.44 -3.34 16 13 S -0.17 -8.61 18.55 -56.49 -1.05 -9.66 16 14 C -0.53 -30.18 10.04 67.95 0.68 -29.50 16 15 H 0.07 3.91 8.03 -2.91 -0.02 3.89 16 16 C 0.05 2.63 5.50 84.86 0.47 3.10 16 17 N -0.92 -55.42 13.97 21.65 0.30 -55.12 16 18 Si 0.91 44.86 27.74 68.60 1.90 46.77 16 19 H -0.26 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 22 C 0.03 0.89 10.84 85.33 0.92 1.82 16 23 N -0.31 -8.83 12.41 -56.77 -0.70 -9.54 16 24 H 0.03 0.20 8.14 -2.39 -0.02 0.19 16 25 H 0.08 0.43 8.12 -2.39 -0.02 0.41 16 26 H 0.08 0.32 6.47 -2.39 -0.02 0.31 16 27 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 28 H 0.08 0.65 8.12 -2.38 -0.02 0.63 16 29 H 0.03 0.27 8.14 -2.38 -0.02 0.26 16 30 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 31 H 0.07 1.29 8.06 -2.39 -0.02 1.27 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.13 0.63 6.49 -2.39 -0.02 0.61 16 34 H 0.23 1.22 8.06 -2.91 -0.02 1.19 16 35 H 0.43 6.26 8.83 -92.71 -0.82 5.45 16 36 H 0.12 3.80 8.14 -2.39 -0.02 3.79 16 37 H 0.12 3.82 8.14 -2.40 -0.02 3.80 16 38 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.18 6.52 5.92 -2.91 -0.02 6.51 16 Total: -1.00 -77.49 343.43 0.74 -76.75 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.21 Total: 11.15 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 7.83 Total: -1.78 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -8.11 Total: -100.52 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.04 Total: -22.70 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.05 Total: -9.66 kcal Total: -77.49 0.74 -76.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061646831.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.196 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds