Wall clock time and date at job start Fri Apr 10 2020 17:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47736 * 353.67739 * 3 2 1 5 5 N 1.46494 * 109.47276 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00017 * 264.85528 * 5 4 3 7 7 C 1.50700 * 109.46966 * 273.89112 * 6 5 4 8 8 H 1.07992 * 120.00206 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99592 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00165 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99865 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46894 * 89.99765 * 11 9 7 13 13 H 1.48497 * 109.47242 * 209.99899 * 11 9 7 14 14 H 1.48501 * 109.46848 * 330.00359 * 11 9 7 15 15 C 1.34776 * 120.00160 * 84.85767 * 5 4 3 16 16 O 1.21555 * 120.00216 * 3.43736 * 15 5 4 17 17 C 1.47849 * 120.00224 * 183.44165 * 15 5 4 18 18 C 1.39589 * 120.18348 * 309.58555 * 17 15 5 19 19 C 1.37805 * 119.78498 * 179.97438 * 18 17 15 20 20 C 1.38669 * 120.40949 * 359.97438 * 19 18 17 21 21 C 1.38372 * 120.08165 * 0.02562 * 20 19 18 22 22 C 1.38237 * 119.99451 * 359.96957 * 21 20 19 23 23 C 1.51399 * 109.74445 * 179.97438 * 21 20 19 24 24 C 1.54330 * 105.17073 * 342.78463 * 23 21 20 25 25 C 1.51732 * 130.13578 * 179.80538 * 20 19 18 26 26 H 1.09003 * 109.46956 * 233.67068 * 3 2 1 27 27 H 1.08997 * 109.46716 * 113.68035 * 3 2 1 28 28 H 1.08995 * 109.47192 * 59.99613 * 4 3 2 29 29 H 1.09001 * 109.46556 * 300.00098 * 4 3 2 30 30 H 1.08998 * 109.46994 * 33.89366 * 6 5 4 31 31 H 1.09003 * 109.47277 * 153.89157 * 6 5 4 32 32 H 0.96999 * 120.00012 * 180.02562 * 10 9 7 33 33 H 1.07996 * 120.10963 * 359.97438 * 18 17 15 34 34 H 1.07996 * 119.79583 * 180.02562 * 19 18 17 35 35 H 1.08000 * 119.94867 * 180.02562 * 22 21 20 36 36 H 1.08995 * 110.30404 * 223.85195 * 23 21 20 37 37 H 1.09005 * 110.37987 * 101.74843 * 23 21 20 38 38 H 1.09003 * 110.82027 * 144.64497 * 24 23 21 39 39 H 1.09004 * 110.81260 * 267.98036 * 24 23 21 40 40 H 1.09000 * 110.24936 * 78.32424 * 25 20 19 41 41 H 1.09001 * 110.49049 * 316.08200 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4328 0.1588 5 7 4.5837 -1.4321 0.1582 6 6 5.3158 -1.6841 -1.0855 7 6 5.4841 -3.1694 -1.2771 8 1 5.0852 -3.8568 -0.5459 9 6 6.1464 -3.6506 -2.3865 10 7 6.6316 -2.8135 -3.2772 11 14 6.3556 -5.4917 -2.6237 12 1 5.2007 -6.0266 -3.3886 13 1 7.6103 -5.7548 -3.3732 14 1 6.4221 -6.1572 -1.2978 15 6 5.2580 -1.1996 1.3018 16 8 4.6523 -1.0525 2.3454 17 6 6.7344 -1.1233 1.2870 18 6 7.4833 -2.1326 0.6795 19 6 8.8590 -2.0529 0.6700 20 6 9.5038 -0.9762 1.2598 21 6 8.7671 0.0275 1.8636 22 6 7.3866 -0.0422 1.8788 23 6 9.7000 1.0781 2.4275 24 6 11.0837 0.3975 2.4909 25 6 10.9849 -0.6696 1.3804 26 1 2.9710 0.6097 0.8279 27 1 2.9710 0.4136 -0.9411 28 1 2.7557 -2.0417 -0.6690 29 1 2.7556 -1.8456 1.1000 30 1 4.7581 -1.2702 -1.9256 31 1 6.2965 -1.2112 -1.0321 32 1 7.0972 -3.1521 -4.0579 33 1 6.9861 -2.9731 0.2183 34 1 9.4385 -2.8335 0.1997 35 1 6.8123 0.7418 2.3500 36 1 9.3777 1.3735 3.4259 37 1 9.7355 1.9466 1.7698 38 1 11.8773 1.1119 2.2722 39 1 11.2417 -0.0689 3.4634 40 1 11.3659 -0.2729 0.4393 41 1 11.5378 -1.5645 1.6659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067677044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:06 Heat of formation + Delta-G solvation = -5.572545 kcal Electronic energy + Delta-G solvation = -23614.691260 eV Core-core repulsion = 20265.409134 eV Total energy + Delta-G solvation = -3349.282126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44487 -40.17269 -37.94654 -36.86849 -36.28926 -34.69526 -32.68801 -32.26151 -29.90865 -29.13247 -28.11432 -25.71560 -24.96283 -23.41129 -22.40033 -21.57659 -19.96232 -18.77996 -18.36312 -17.98482 -17.26762 -16.73824 -16.52275 -16.27579 -15.89018 -15.84825 -15.39389 -15.09531 -14.62003 -14.32314 -14.24227 -13.92424 -13.64624 -13.63962 -13.55635 -13.43393 -13.22609 -12.96515 -12.76040 -12.67926 -12.58952 -12.29474 -12.04652 -11.95128 -11.81915 -11.69369 -11.66952 -11.49274 -10.82089 -10.53255 -9.69583 -9.53360 -9.25283 -8.16353 -6.27112 0.17981 0.58348 1.42806 1.47800 1.54210 1.58200 1.76032 1.84896 2.22491 2.44816 2.91604 3.12359 3.14808 3.55871 3.73663 3.82437 4.10682 4.12940 4.19108 4.27745 4.33175 4.47440 4.51939 4.65741 4.77183 4.81664 4.89754 4.93223 4.99186 5.01452 5.03643 5.16373 5.24561 5.31699 5.36710 5.43157 5.59422 5.64317 5.70111 5.75352 5.84140 6.09803 6.15326 6.50639 6.52890 6.83618 7.25057 7.42517 8.88880 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.006035 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.831393 B = 4638.312504 C = 6992.965799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.246 3.754 3 C -0.030 4.030 4 C 0.123 3.877 5 N -0.587 5.587 6 C 0.246 3.754 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.035 3.965 10 N -0.908 5.908 11 Si 0.940 3.060 12 H -0.279 1.279 13 H -0.282 1.282 14 H -0.271 1.271 15 C 0.562 3.438 16 O -0.584 6.584 17 C -0.145 4.145 18 C -0.082 4.082 19 C -0.130 4.130 20 C -0.087 4.087 21 C -0.122 4.122 22 C -0.071 4.071 23 C -0.076 4.076 24 C -0.112 4.112 25 C -0.083 4.083 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.143 0.857 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 6.839 6.852 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.071 4.071 3 C -0.071 4.071 4 C -0.002 4.002 5 N -0.316 5.316 6 C 0.126 3.874 7 C -0.579 4.579 8 H 0.073 0.927 9 C -0.167 4.167 10 N -0.547 5.547 11 Si 0.767 3.233 12 H -0.204 1.204 13 H -0.208 1.208 14 H -0.196 1.196 15 C 0.352 3.648 16 O -0.467 6.467 17 C -0.148 4.148 18 C -0.100 4.100 19 C -0.148 4.148 20 C -0.087 4.087 21 C -0.122 4.122 22 C -0.090 4.090 23 C -0.113 4.113 24 C -0.149 4.149 25 C -0.120 4.120 26 H 0.137 0.863 27 H 0.149 0.851 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.160 0.840 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.691 6.923 7.178 12.594 hybrid contribution 0.101 -1.372 -0.703 1.545 sum 7.792 5.551 6.475 11.552 Atomic orbital electron populations 1.81200 1.14183 1.10006 1.11124 1.29149 0.95000 0.91754 0.91242 1.19682 0.80261 0.99817 1.07384 1.21218 0.79836 0.95293 1.03827 1.48059 1.06231 1.67433 1.09842 1.19322 0.92393 0.95502 0.80176 1.21542 1.36628 0.92706 1.07037 0.92748 1.25434 0.94950 1.00918 0.95364 1.69985 1.37253 1.35707 1.11714 0.85823 0.77630 0.81583 0.78310 1.20447 1.20776 1.19575 1.18562 0.87699 0.75470 0.83052 1.90673 1.70651 1.53562 1.31821 1.19702 0.92535 0.98517 1.04057 1.22007 0.94477 0.99374 0.94170 1.20730 0.93847 0.99077 1.01119 1.21260 0.97853 0.93664 0.95960 1.20805 0.92729 0.98204 1.00491 1.20620 0.93905 0.96819 0.97672 1.21101 0.92867 0.95921 1.01434 1.22309 0.96550 0.97474 0.98592 1.21248 0.89808 1.00358 1.00567 0.86300 0.85075 0.88927 0.90651 0.95051 0.94507 0.92382 0.84005 0.85704 0.85406 0.89778 0.89246 0.88210 0.90417 0.89308 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.01 18.54 20.01 0.37 -15.64 16 2 C 0.25 6.86 15.43 89.44 1.38 8.24 16 3 C -0.03 -0.76 5.99 28.79 0.17 -0.58 16 4 C 0.12 3.88 5.36 86.38 0.46 4.35 16 5 N -0.59 -22.19 2.47 -829.58 -2.05 -24.24 16 6 C 0.25 10.62 4.65 85.63 0.40 11.02 16 7 C -0.54 -25.58 6.64 25.60 0.17 -25.41 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.62 16 9 C 0.04 1.71 5.46 84.66 0.46 2.17 16 10 N -0.91 -46.46 13.29 21.45 0.28 -46.18 16 11 Si 0.94 39.42 29.54 68.60 2.03 41.44 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 14 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 15 C 0.56 22.40 7.19 86.79 0.62 23.02 16 16 O -0.58 -24.98 16.69 -3.89 -0.06 -25.04 16 17 C -0.15 -5.55 4.82 -20.12 -0.10 -5.65 16 18 C -0.08 -3.23 7.64 22.49 0.17 -3.06 16 19 C -0.13 -4.44 10.02 22.27 0.22 -4.21 16 20 C -0.09 -2.51 6.15 -19.40 -0.12 -2.63 16 21 C -0.12 -3.44 6.13 -19.61 -0.12 -3.56 16 22 C -0.07 -2.34 9.73 22.56 0.22 -2.12 16 23 C -0.08 -1.45 6.77 30.52 0.21 -1.25 16 24 C -0.11 -1.71 7.06 31.50 0.22 -1.49 16 25 C -0.08 -1.64 6.80 30.63 0.21 -1.44 16 26 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.09 2.91 8.03 -2.39 -0.02 2.89 16 29 H 0.08 2.47 7.54 -2.39 -0.02 2.45 16 30 H 0.03 1.39 8.10 -2.39 -0.02 1.37 16 31 H 0.04 1.71 5.74 -2.39 -0.01 1.70 16 32 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 33 H 0.14 6.26 4.84 -2.91 -0.01 6.25 16 34 H 0.12 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -59.85 349.29 6.20 -53.65 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 1.04 Total: 18.59 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 4.59 Total: -2.59 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -1.39 Total: -86.06 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.44 kcal Total: -59.85 6.20 -53.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067677044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.081 kcal (2) G-P(sol) polarization free energy of solvation -59.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds