Wall clock time and date at job start Fri Apr 10 2020 17:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99464 * 2 1 4 4 C 1.53002 * 109.46751 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47303 * 65.00147 * 4 3 2 6 6 C 1.36955 * 120.00003 * 273.62254 * 5 4 3 7 7 H 1.08000 * 119.99687 * 132.48079 * 6 5 4 8 8 C 1.38982 * 120.00047 * 312.48291 * 6 5 4 9 9 N 1.31408 * 120.00380 * 2.79838 * 8 6 5 10 10 Si 1.86805 * 120.00228 * 182.79834 * 8 6 5 11 11 H 1.48500 * 109.46638 * 60.00024 * 10 8 6 12 12 H 1.48495 * 109.47285 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47068 * 300.00404 * 10 8 6 14 14 C 1.34779 * 119.99767 * 93.62045 * 5 4 3 15 15 O 1.21619 * 120.00452 * 3.97439 * 14 5 4 16 16 C 1.47445 * 119.99753 * 183.96906 * 14 5 4 17 17 C 1.36668 * 125.77890 * 174.32419 * 16 14 5 18 18 N 1.34828 * 106.82633 * 179.71954 * 17 16 14 19 19 C 1.46500 * 126.59403 * 180.26200 * 18 17 16 20 20 C 1.50700 * 109.47370 * 125.00209 * 19 18 17 21 21 O 1.20823 * 119.99563 * 0.02562 * 20 19 18 22 22 O 1.34230 * 120.00354 * 179.97438 * 20 19 18 23 23 N 1.40210 * 106.81795 * 0.26606 * 18 17 16 24 24 N 1.28752 * 108.38333 * 359.97438 * 23 18 17 25 25 H 1.08999 * 109.47062 * 60.00417 * 1 2 3 26 26 H 1.09008 * 109.46604 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47089 * 299.99568 * 1 2 3 28 28 H 1.09000 * 109.47236 * 60.00258 * 3 2 1 29 29 H 1.09000 * 109.47341 * 299.99902 * 3 2 1 30 30 H 1.09003 * 109.47129 * 304.99966 * 4 3 2 31 31 H 1.09006 * 109.46926 * 185.00294 * 4 3 2 32 32 H 0.96995 * 120.00300 * 179.97438 * 9 8 6 33 33 H 1.08000 * 126.58153 * 359.97438 * 17 16 14 34 34 H 1.09001 * 109.47679 * 245.00438 * 19 18 17 35 35 H 1.09000 * 109.46861 * 5.00037 * 19 18 17 36 36 H 0.96694 * 116.99898 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2527 6 6 4.0257 -0.7998 -1.3605 7 1 3.5996 -1.2892 -2.2239 8 6 4.6247 -1.5545 -0.3589 9 7 5.0940 -0.9641 0.7171 10 14 4.7627 -3.4084 -0.5423 11 1 5.5568 -3.7279 -1.7558 12 1 5.4369 -3.9753 0.6532 13 1 3.4049 -3.9956 -0.6705 14 6 4.3314 1.3368 -2.2985 15 8 4.3564 2.5469 -2.1803 16 6 4.6904 0.7143 -3.5860 17 6 4.9613 1.3810 -4.7479 18 7 5.2478 0.4464 -5.6765 19 6 5.6065 0.6873 -7.0763 20 6 6.9213 0.0166 -7.3806 21 8 7.4990 -0.5998 -6.5168 22 8 7.4500 0.1031 -8.6113 23 7 5.1362 -0.8004 -5.0450 24 7 4.8039 -0.6051 -3.8165 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8514 0.5683 0.8410 31 1 3.9784 2.1767 0.0890 32 1 5.5117 -1.4908 1.4163 33 1 4.9521 2.4512 -4.8930 34 1 4.8317 0.2793 -7.7254 35 1 5.6973 1.7598 -7.2487 36 1 8.2951 -0.3432 -8.7584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604583881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:44:06 Heat of formation + Delta-G solvation = -71.678994 kcal Electronic energy + Delta-G solvation = -24513.764766 eV Core-core repulsion = 20614.933692 eV Total energy + Delta-G solvation = -3898.831074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.116 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.02850 -41.22373 -40.20493 -38.44418 -37.24550 -36.56003 -35.52108 -33.39028 -31.99325 -30.91161 -29.58043 -27.22484 -26.55596 -24.74908 -24.27606 -22.79910 -22.27743 -20.99858 -19.54314 -19.24745 -18.05755 -17.80254 -17.26984 -17.12139 -17.04843 -16.76579 -16.28497 -16.10526 -16.04406 -15.64943 -15.30328 -15.00420 -14.53196 -14.16287 -13.97963 -13.45765 -13.36530 -13.04804 -12.89302 -12.69086 -12.64678 -12.58978 -12.41693 -12.06449 -11.99637 -11.79009 -11.60492 -11.19145 -10.93445 -10.52305 -10.39958 -10.10524 -9.26938 -8.08430 -5.93133 0.24471 1.00870 1.06499 1.08545 1.45052 1.51184 1.57778 1.99772 2.39529 2.62141 2.88580 3.13330 3.27278 3.59523 3.66052 4.08115 4.10987 4.18005 4.23034 4.32619 4.49211 4.53629 4.58991 4.65507 4.70281 4.80597 4.88274 5.07927 5.48265 5.52413 5.57951 5.82870 6.14484 6.52408 6.62516 6.86816 7.14517 7.33613 7.63141 8.01477 8.89974 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.016625 B = 0.004941 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.818680 B = 5665.577977 C = 6564.273516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.068 3.932 4 C 0.095 3.905 5 N -0.426 5.426 6 C -0.288 4.288 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.906 5.906 10 Si 0.970 3.030 11 H -0.280 1.280 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.536 3.464 15 O -0.624 6.624 16 C -0.097 4.097 17 C 0.102 3.898 18 N -0.361 5.361 19 C 0.129 3.871 20 C 0.471 3.529 21 O -0.544 6.544 22 O -0.497 6.497 23 N -0.098 5.098 24 N -0.201 5.201 25 H 0.039 0.961 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.266 0.734 33 H 0.245 0.755 34 H 0.173 0.827 35 H 0.198 0.802 36 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 5.534 -16.050 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.028 4.028 5 N -0.141 5.141 6 C -0.417 4.417 7 H 0.109 0.891 8 C -0.193 4.193 9 N -0.547 5.547 10 Si 0.795 3.205 11 H -0.206 1.206 12 H -0.206 1.206 13 H -0.192 1.192 14 C 0.324 3.676 15 O -0.512 6.512 16 C -0.236 4.236 17 C -0.054 4.054 18 N -0.148 5.148 19 C 0.009 3.991 20 C 0.312 3.688 21 O -0.433 6.433 22 O -0.311 6.311 23 N -0.078 5.078 24 N -0.074 5.074 25 H 0.058 0.942 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.261 0.739 34 H 0.190 0.810 35 H 0.215 0.785 36 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -2.401 4.371 -15.716 16.488 hybrid contribution 0.657 -0.130 0.295 0.732 sum -1.744 4.240 -15.420 16.088 Atomic orbital electron populations 1.22858 0.81015 1.03034 1.00179 1.88146 1.20104 1.27869 1.95246 1.22797 0.94270 0.84561 0.99366 1.21817 0.91783 0.98343 0.90852 1.43377 1.54026 1.06404 1.10329 1.19489 1.34870 0.80392 1.06961 0.89111 1.26007 0.94818 1.03237 0.95241 1.69670 1.39629 1.37020 1.08359 0.85345 0.78606 0.79434 0.77076 1.20600 1.20641 1.19174 1.17531 0.80239 0.85651 0.84180 1.90570 1.61485 1.14117 1.85010 1.21588 1.15368 0.89629 0.96979 1.23703 0.96749 0.98308 0.86661 1.50159 1.47636 1.05982 1.11007 1.21771 0.93349 1.07066 0.76956 1.23502 0.87428 0.77627 0.80210 1.90903 1.62459 1.40745 1.49174 1.84405 1.43317 1.72483 1.30902 1.81986 1.21795 1.02758 1.01243 1.75172 1.08727 1.16834 1.06687 0.94224 0.89359 0.92937 0.91345 0.95004 0.87103 0.91640 0.92460 0.73927 0.81001 0.78495 0.70400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.39 -17.47 10.00 -148.98 -1.49 -18.96 16 3 C 0.07 2.86 6.28 71.98 0.45 3.31 16 4 C 0.10 4.79 5.57 86.38 0.48 5.27 16 5 N -0.43 -23.08 2.50 -639.22 -1.60 -24.68 16 6 C -0.29 -16.22 6.99 84.07 0.59 -15.63 16 7 H 0.09 5.25 6.19 -2.91 -0.02 5.23 16 8 C 0.01 0.40 5.39 84.93 0.46 0.86 16 9 N -0.91 -52.26 10.87 21.67 0.24 -52.02 16 10 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 11 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.54 27.57 7.63 86.67 0.66 28.24 16 15 O -0.62 -32.24 16.37 -4.09 -0.07 -32.31 16 16 C -0.10 -4.38 6.74 40.81 0.28 -4.10 16 17 C 0.10 3.17 11.28 83.87 0.95 4.12 16 18 N -0.36 -10.24 3.41 -350.76 -1.20 -11.44 16 19 C 0.13 1.71 7.13 85.63 0.61 2.33 16 20 C 0.47 8.87 8.36 71.24 0.60 9.47 16 21 O -0.54 -17.51 16.49 21.97 0.36 -17.14 16 22 O -0.50 -5.17 13.42 -51.41 -0.69 -5.86 16 23 N -0.10 -4.03 12.89 37.02 0.48 -3.55 16 24 N -0.20 -9.72 9.18 -50.00 -0.46 -10.18 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 6.11 5.31 -2.39 -0.01 6.10 16 31 H 0.07 3.26 7.27 -2.38 -0.02 3.24 16 32 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.24 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.17 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.20 0.47 8.08 -2.39 -0.02 0.45 16 36 H 0.43 1.77 9.10 -74.06 -0.67 1.10 16 Total: -1.00 -88.05 323.57 4.39 -83.67 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.47 Total: 7.72 kcal Atomic # 6 Polarization: 29.60 SS G_CDS: 6.31 Total: 35.91 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -2.54 Total: -101.88 kcal Atomic # 8 Polarization: -72.39 SS G_CDS: -1.89 Total: -74.27 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -88.05 4.39 -83.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604583881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.989 kcal (2) G-P(sol) polarization free energy of solvation -88.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds